arXiv subjects

Ji Wu

Publications and source records attributed to Ji Wu.

At least 55 records · Page 3Linked to original sources

arXiv2025

Decoupling Knowledge and Reasoning in LLMs: An Exploration Using Cognitive Dual-System Theory

While large language models (LLMs) leverage both knowledge and reasoning during inference, the capacity to distinguish between them plays a pivotal role in model analysis, interpretability, and development. Inspired by dual-system cognitive theory, we propose a cognition attribution framework to decouple the contribution of knowledge and reasoning. In particular, the cognition of LLMs is decomposed into two distinct yet complementary phases: knowledge retrieval (Phase 1) and reasoning adjustment (Phase 2). To separate these phases, LLMs are prompted to generate answers under two different cognitive modes, fast thinking and slow thinking, respectively. The performance under different cognitive modes is analyzed to quantify the contribution of knowledge and reasoning. This architecture is employed to 15 LLMs across 3 datasets. Results reveal: (1) reasoning adjustment is domain-specific, benefiting reasoning-intensive domains (e.g., mathematics, physics, and chemistry) and potentially imparing knowledge-intensive domains. (2) Parameter scaling improves both knowledge and reasoning, with knowledge improvements being more pronounced. Additionally, parameter scaling make LLMs reasoning significantly more prudent, while moderately more intelligent. (3) Knowledge primarily resides in lower network layers, while reasoning operates in higher layers. Our framework not only helps understand LLMs from a "decoupling" perspective, but also provides new insights into existing research, including scaling laws, hierarchical knowledge editing, and limitations of small-model reasoning.

cs.AI↗

arXiv2025

Co-occurrence is not Factual Association in Language Models

Pretrained language models can encode a large amount of knowledge and utilize it for various reasoning tasks, yet they can still struggle to learn novel factual knowledge effectively from finetuning on limited textual demonstrations. In this work, we show that the reason for this deficiency is that language models are biased to learn word co-occurrence statistics instead of true factual associations. We identify the differences between two forms of knowledge representation in language models: knowledge in the form of co-occurrence statistics is encoded in the middle layers of the transformer model and does not generalize well to reasoning scenarios beyond simple question answering, while true factual associations are encoded in the lower layers and can be freely utilized in various reasoning tasks. Based on these observations, we propose two strategies to improve the learning of factual associations in language models. We show that training on text with implicit rather than explicit factual associations can force the model to learn factual associations instead of co-occurrence statistics, significantly improving the generalization of newly learned knowledge. We also propose a simple training method to actively forget the learned co-occurrence statistics, which unblocks and enhances the learning of factual associations when training on plain narrative text. On both synthetic and real-world corpora, the two proposed strategies improve the generalization of the knowledge learned during finetuning to reasoning scenarios such as indirect and multi-hop question answering.

cs.CL↗

arXiv2025

Evaluating LLMs Across Multi-Cognitive Levels: From Medical Knowledge Mastery to Scenario-Based Problem Solving

Large language models (LLMs) have demonstrated remarkable performance on various medical benchmarks, but their capabilities across different cognitive levels remain underexplored. Inspired by Bloom's Taxonomy, we propose a multi-cognitive-level evaluation framework for assessing LLMs in the medical domain in this study. The framework integrates existing medical datasets and introduces tasks targeting three cognitive levels: preliminary knowledge grasp, comprehensive knowledge application, and scenario-based problem solving. Using this framework, we systematically evaluate state-of-the-art general and medical LLMs from six prominent families: Llama, Qwen, Gemma, Phi, GPT, and DeepSeek. Our findings reveal a significant performance decline as cognitive complexity increases across evaluated models, with model size playing a more critical role in performance at higher cognitive levels. Our study highlights the need to enhance LLMs' medical capabilities at higher cognitive levels and provides insights for developing LLMs suited to real-world medical applications.

cs.CL↗

arXiv2025

The 1st SpeechWellness Challenge: Detecting Suicide Risk Among Adolescents

The 1st SpeechWellness Challenge (SW1) aims to advance methods for detecting current suicide risk in adolescents using speech analysis techniques. Suicide among adolescents is a critical public health issue globally. Early detection of suicidal tendencies can lead to timely intervention and potentially save lives. Traditional methods of assessment often rely on self-reporting or clinical interviews, which may not always be accessible. The SW1 challenge addresses this gap by exploring speech as a non-invasive and readily available indicator of mental health. We release the SW1 dataset which contains speech recordings from 600 adolescents aged 10-18 years. By focusing on speech generated from natural tasks, the challenge seeks to uncover patterns and markers that correlate with current suicide risk.

eess.AS↗

arXiv2025

LLM Sensitivity Evaluation Framework for Clinical Diagnosis

Large language models (LLMs) have demonstrated impressive performance across various domains. However, for clinical diagnosis, higher expectations are required for LLM's reliability and sensitivity: thinking like physicians and remaining sensitive to key medical information that affects diagnostic reasoning, as subtle variations can lead to different diagnosis results. Yet, existing works focus mainly on investigating the sensitivity of LLMs to irrelevant context and overlook the importance of key information. In this paper, we investigate the sensitivity of LLMs, i.e. GPT-3.5, GPT-4, Gemini, Claude3 and LLaMA2-7b, to key medical information by introducing different perturbation strategies. The evaluation results highlight the limitations of current LLMs in remaining sensitive to key medical information for diagnostic decision-making. The evolution of LLMs must focus on improving their reliability, enhancing their ability to be sensitive to key information, and effectively utilizing this information. These improvements will enhance human trust in LLMs and facilitate their practical application in real-world scenarios. Our code and dataset are available at https://github.com/chenwei23333/DiagnosisQA.

cs.CL↗

arXiv2025

Enhancing Multi-task Learning Capability of Medical Generalist Foundation Model via Image-centric Multi-annotation Data

The emergence of medical generalist foundation models has revolutionized conventional task-specific model development paradigms, aiming to better handle multiple tasks through joint training on large-scale medical datasets. However, recent advances prioritize simple data scaling or architectural component enhancement, while neglecting to re-examine multi-task learning from a data-centric perspective. Critically, simply aggregating existing data resources leads to decentralized image-task alignment, which fails to cultivate comprehensive image understanding or align with clinical needs for multi-dimensional image interpretation. In this paper, we introduce the image-centric multi-annotation X-ray dataset (IMAX), the first attempt to enhance the multi-task learning capabilities of medical multi-modal large language models (MLLMs) from the data construction level. To be specific, IMAX is featured from the following attributes: 1) High-quality data curation. A comprehensive collection of more than 354K entries applicable to seven different medical tasks. 2) Image-centric dense annotation. Each X-ray image is associated with an average of 4.10 tasks and 7.46 training entries, ensuring multi-task representation richness per image. Compared to the general decentralized multi-annotation X-ray dataset (DMAX), IMAX consistently demonstrates significant multi-task average performance gains ranging from 3.20% to 21.05% across seven open-source state-of-the-art medical MLLMs. Moreover, we investigate differences in statistical patterns exhibited by IMAX and DMAX training processes, exploring potential correlations between optimization dynamics and multi-task performance. Finally, leveraging the core concept of IMAX data construction, we propose an optimized DMAX-based training strategy to alleviate the dilemma of obtaining high-quality IMAX data in practical scenarios.

cs.CV↗

arXiv2025

Hallmarks of terahertz magnon currents in an antiferromagnetic insulator

The efficient transport of spin angular momentum is expected to play a crucial role in future spintronic devices, which potentially operate at frequencies reaching the terahertz range. Antiferromagnetic insulators exhibit significant potential for facilitating ultrafast pure spin currents by terahertz magnons. Consequently, we here use femtosecond laser pulses to trigger ultrafast spin currents across antiferromagnetic NiO thin films in Py|NiO|Pt stacks, where permalloy (Py) and Pt serve as spin-current source and detector respectively. We find that the spin current pulses traversing NiO reach a velocity up to 40 nm/ps and experience increasing delay and broadening as the NiO thickness is increased. We can consistently explain our observations by ballistic transport of incoherent magnon. Our approach has high potential to characterize terahertz magnon transport in magnetic insulators with any kind of magnetic order.

cond-mat.mes-hall↗

arXiv2025

Enhancing elusive clues in knowledge learning by contrasting attention of language models

Causal language models acquire vast amount of knowledge from general text corpus during pretraining, but the efficiency of knowledge learning is known to be unsatisfactory, especially when learning from knowledge-dense and small-sized corpora. The deficiency can come from long-distance dependencies which are hard to capture by language models, and overfitting to co-occurrence patterns and distracting clues in the training text. To address these issues, the paper proposes a method to enhance knowledge learning during language model pretraining, by enhancing elusive but important clues in text discovered by the language model themselves. We found that larger language models pay more attention to non-obvious but important clues, which are often overlooked by smaller language models. Therefore, we can identify these clues by contrasting the attention weights of large and small language models. We use the identified clues as a guide to perform token-dropout data augmentation on the training text, and observed a significant boost in both small and large models' performance in fact memorization. This shows that the behavior contrast between more and less-performant language models contains important clues for knowledge learning, and it can be ``amplified" for a straight-forward improvement in knowledge learning efficiency.

cs.AI↗

arXiv2025

TROI: Cross-Subject Pretraining with Sparse Voxel Selection for Enhanced fMRI Visual Decoding

fMRI (functional Magnetic Resonance Imaging) visual decoding involves decoding the original image from brain signals elicited by visual stimuli. This often relies on manually labeled ROIs (Regions of Interest) to select brain voxels. However, these ROIs can contain redundant information and noise, reducing decoding performance. Additionally, the lack of automated ROI labeling methods hinders the practical application of fMRI visual decoding technology, especially for new subjects. This work presents TROI (Trainable Region of Interest), a novel two-stage, data-driven ROI labeling method for cross-subject fMRI decoding tasks, particularly when subject samples are limited. TROI leverages labeled ROIs in the dataset to pretrain an image decoding backbone on a cross-subject dataset, enabling efficient optimization of the input layer for new subjects without retraining the entire model from scratch. In the first stage, we introduce a voxel selection method that combines sparse mask training and low-pass filtering to quickly generate the voxel mask and determine input layer dimensions. In the second stage, we apply a learning rate rewinding strategy to fine-tune the input layer for downstream tasks. Experimental results on the same small sample dataset as the baseline method for brain visual retrieval and reconstruction tasks show that our voxel selection method surpasses the state-of-the-art method MindEye2 with an annotated ROI mask.

cs.CV↗

arXiv2025

LiDAR-enhanced 3D Gaussian Splatting Mapping

This paper introduces LiGSM, a novel LiDAR-enhanced 3D Gaussian Splatting (3DGS) mapping framework that improves the accuracy and robustness of 3D scene mapping by integrating LiDAR data. LiGSM constructs joint loss from images and LiDAR point clouds to estimate the poses and optimize their extrinsic parameters, enabling dynamic adaptation to variations in sensor alignment. Furthermore, it leverages LiDAR point clouds to initialize 3DGS, providing a denser and more reliable starting points compared to sparse SfM points. In scene rendering, the framework augments standard image-based supervision with depth maps generated from LiDAR projections, ensuring an accurate scene representation in both geometry and photometry. Experiments on public and self-collected datasets demonstrate that LiGSM outperforms comparative methods in pose tracking and scene rendering.

cs.RO↗

arXiv2025

MIH-TCCT: Mitigating Inconsistent Hallucinations in LLMs via Event-Driven Text-Code Cyclic Training

Recent methodologies utilizing synthetic datasets have aimed to address inconsistent hallucinations in large language models (LLMs); however,these approaches are primarily tailored to specific tasks, limiting their generalizability. Inspired by the strong performance of code-trained models in logic-intensive domains, we propose a novel framework that leverages event-based text to generate corresponding code and employs cyclic training to transfer the logical consistency of code to natural language effectively. Our method significantly reduces inconsistent hallucinations across three leading LLMs and two categories of natural language tasks while maintaining overall performance. This framework effectively alleviates hallucinations without necessitating adaptation to downstream tasks, demonstrating generality and providing new perspectives to tackle the challenge of inconsistent hallucinations.

cs.AI↗

arXiv2025

Connector-S: A Survey of Connectors in Multi-modal Large Language Models

With the rapid advancements in multi-modal large language models (MLLMs), connectors play a pivotal role in bridging diverse modalities and enhancing model performance. However, the design and evolution of connectors have not been comprehensively analyzed, leaving gaps in understanding how these components function and hindering the development of more powerful connectors. In this survey, we systematically review the current progress of connectors in MLLMs and present a structured taxonomy that categorizes connectors into atomic operations (mapping, compression, mixture of experts) and holistic designs (multi-layer, multi-encoder, multi-modal scenarios), highlighting their technical contributions and advancements. Furthermore, we discuss several promising research frontiers and challenges, including high-resolution input, dynamic compression, guide information selection, combination strategy, and interpretability. This survey is intended to serve as a foundational reference and a clear roadmap for researchers, providing valuable insights into the design and optimization of next-generation connectors to enhance the performance and adaptability of MLLMs.

cs.LG↗

arXiv2025

Data Augmentation Techniques for Chinese Disease Name Normalization

Disease name normalization is an important task in the medical domain. It classifies disease names written in various formats into standardized names, serving as a fundamental component in smart healthcare systems for various disease-related functions. Nevertheless, the most significant obstacle to existing disease name normalization systems is the severe shortage of training data. Consequently, we present a novel data augmentation approach that includes a series of data augmentation techniques and some supporting modules to help mitigate the problem. Through extensive experimentation, we illustrate that our proposed approach exhibits significant performance improvements across various baseline models and training objectives, particularly in scenarios with limited training data

cs.CL↗

arXiv2024

QuadricsReg: Large-Scale Point Cloud Registration using Quadric Primitives

In the realm of large-scale point cloud registration, designing a compact symbolic representation is crucial for efficiently processing vast amounts of data, ensuring registration robustness against significant viewpoint variations and occlusions. This paper introduces a novel point cloud registration method, i.e., QuadricsReg, which leverages concise quadrics primitives to represent scenes and utilizes their geometric characteristics to establish correspondences for 6-DoF transformation estimation. As a symbolic feature, the quadric representation fully captures the primary geometric characteristics of scenes, which can efficiently handle the complexity of large-scale point clouds. The intrinsic characteristics of quadrics, such as types and scales, are employed to initialize correspondences. Then we build a multi-level compatibility graph set to find the correspondences using the maximum clique on the geometric consistency between quadrics. Finally, we estimate the 6-DoF transformation using the quadric correspondences, which is further optimized based on the quadric degeneracy-aware distance in a factor graph, ensuring high registration accuracy and robustness against degenerate structures. We test on 5 public datasets and the self-collected heterogeneous dataset across different LiDAR sensors and robot platforms. The exceptional registration success rates and minimal registration errors demonstrate the effectiveness of QuadricsReg in large-scale point cloud registration scenarios. Furthermore, the real-world registration testing on our self-collected heterogeneous dataset shows the robustness and generalization ability of QuadricsReg on different LiDAR sensors and robot platforms. The codes and demos will be released at \url{https://levenberg.github.io/QuadricsReg}.

cs.RO↗

arXiv2024

CMM-Math: A Chinese Multimodal Math Dataset To Evaluate and Enhance the Mathematics Reasoning of Large Multimodal Models

Large language models (LLMs) have obtained promising results in mathematical reasoning, which is a foundational skill for human intelligence. Most previous studies focus on improving and measuring the performance of LLMs based on textual math reasoning datasets (e.g., MATH, GSM8K). Recently, a few researchers have released English multimodal math datasets (e.g., MATHVISTA and MATH-V) to evaluate the effectiveness of large multimodal models (LMMs). In this paper, we release a Chinese multimodal math (CMM-Math) dataset, including benchmark and training parts, to evaluate and enhance the mathematical reasoning of LMMs. CMM-Math contains over 28,000 high-quality samples, featuring a variety of problem types (e.g., multiple-choice, fill-in-the-blank, and so on) with detailed solutions across 12 grade levels from elementary to high school in China. Specifically, the visual context may be present in the questions or opinions, which makes this dataset more challenging. Through comprehensive analysis, we discover that state-of-the-art LMMs on the CMM-Math dataset face challenges, emphasizing the necessity for further improvements in LMM development. We also propose a Multimodal Mathematical LMM (Math-LMM) to handle the problems with mixed input of multiple images and text segments. We train our model using three stages, including foundational pre-training, foundational fine-tuning, and mathematical fine-tuning. The extensive experiments indicate that our model effectively improves math reasoning performance by comparing it with the SOTA LMMs over three multimodal mathematical datasets.

cs.CL↗

arXiv2024

Uni-Med: A Unified Medical Generalist Foundation Model For Multi-Task Learning Via Connector-MoE

Multi-modal large language models (MLLMs) have shown impressive capabilities as a general-purpose interface for various visual and linguistic tasks. However, building a unified MLLM for multi-task learning in the medical field remains a thorny challenge. To mitigate the tug-of-war problem of multi-modal multi-task optimization in MLLMs, recent advances primarily focus on improving the LLM components, while neglecting the connector that bridges the gap between modalities. In this paper, we introduce Uni-Med, a novel medical generalist foundation model which consists of a universal visual feature extraction module, a connector mixture-of-experts (CMoE) module, and an LLM. Benefiting from the proposed CMoE that leverages a well-designed router with a mixture of projection experts at the connector, Uni-Med achieves efficient solution to the tug-of-war problem and can perform six different medical tasks including question answering, visual question answering, report generation, referring expression comprehension, referring expression generation and image classification. To the best of our knowledge, Uni-Med is the first effort to tackle multi-task interference at the connector in MLLMs. Extensive ablation experiments validate the effectiveness of introducing CMoE under any configuration, with up to an average 8% performance gains. We further provide interpretation analysis of the tug-of-war problem from the perspective of gradient optimization and parameter statistics. Compared to previous state-of-the-art medical MLLMs, Uni-Med achieves competitive or superior evaluation metrics on diverse tasks. Code and resources are available at https://github.com/tsinghua-msiip/Uni-Med.

cs.CV↗

arXiv2024

Reliable and diverse evaluation of LLM medical knowledge mastery

Mastering medical knowledge is crucial for medical-specific LLMs. However, despite the existence of medical benchmarks like MedQA, a unified framework that fully leverages existing knowledge bases to evaluate LLMs' mastery of medical knowledge is still lacking. In the study, we propose a novel framework PretexEval that dynamically generates reliable and diverse test samples to evaluate LLMs for any given medical knowledge base. We notice that test samples produced directly from knowledge bases by templates or LLMs may introduce factual errors and also lack diversity. To address these issues, we introduce a novel schema into our proposed evaluation framework that employs predicate equivalence transformations to produce a series of variants for any given medical knowledge point. Finally, these produced predicate variants are converted into textual language, resulting in a series of reliable and diverse test samples to evaluate whether LLMs fully master the given medical factual knowledge point. Here, we use our proposed framework to systematically investigate the mastery of medical factual knowledge of 12 well-known LLMs, based on two knowledge bases that are crucial for clinical diagnosis and treatment. The evaluation results illustrate that current LLMs still exhibit significant deficiencies in fully mastering medical knowledge, despite achieving considerable success on some famous public benchmarks. These new findings provide valuable insights for developing medical-specific LLMs, highlighting that current LLMs urgently need to strengthen their comprehensive and in-depth mastery of medical knowledge before being applied to real-world medical scenarios.

cs.CL↗

arXiv2024

From Static to Dynamic Structures: Improving Binding Affinity Prediction with Graph-Based Deep Learning

Accurate prediction of protein-ligand binding affinities is an essential challenge in structure-based drug design. Despite recent advances in data-driven methods for affinity prediction, their accuracy is still limited, partially because they only take advantage of static crystal structures while the actual binding affinities are generally determined by the thermodynamic ensembles between proteins and ligands. One effective way to approximate such a thermodynamic ensemble is to use molecular dynamics (MD) simulation. Here, an MD dataset containing 3,218 different protein-ligand complexes is curated, and Dynaformer, a graph-based deep learning model is further developed to predict the binding affinities by learning the geometric characteristics of the protein-ligand interactions from the MD trajectories. In silico experiments demonstrated that the model exhibits state-of-the-art scoring and ranking power on the CASF-2016 benchmark dataset, outperforming the methods hitherto reported. Moreover, in a virtual screening on heat shock protein 90 (HSP90) using Dynaformer, 20 candidates are identified and their binding affinities are further experimentally validated. Dynaformer displayed promising results in virtual drug screening, revealing 12 hit compounds (two are in the submicromolar range), including several novel scaffolds. Overall, these results demonstrated that the approach offer a promising avenue for accelerating the early drug discovery process.

q-bio.BM↗