arXiv subjects

Jia Wu

Publications and source records attributed to Jia Wu.

At least 55 records · Page 3Linked to original sources

arXiv2025

MoCha-Stereo: Motif Channel Attention Network for Stereo Matching

Learning-based stereo matching techniques have made significant progress. However, existing methods inevitably lose geometrical structure information during the feature channel generation process, resulting in edge detail mismatches. In this paper, the Motif Cha}nnel Attention Stereo Matching Network (MoCha-Stereo) is designed to address this problem. We provide the Motif Channel Correlation Volume (MCCV) to determine more accurate edge matching costs. MCCV is achieved by projecting motif channels, which capture common geometric structures in feature channels, onto feature maps and cost volumes. In addition, edge variations in %potential feature channels of the reconstruction error map also affect details matching, we propose the Reconstruction Error Motif Penalty (REMP) module to further refine the full-resolution disparity estimation. REMP integrates the frequency information of typical channel features from the reconstruction error. MoCha-Stereo ranks 1st on the KITTI-2015 and KITTI-2012 Reflective leaderboards. Our structure also shows excellent performance in Multi-View Stereo. Code is avaliable at https://github.com/ZYangChen/MoCha-Stereo.

cs.CV↗

arXiv2025

Knowledge-aware contrastive heterogeneous molecular graph learning

Molecular representation learning is pivotal in predicting molecular properties and advancing drug design. Traditional methodologies, which predominantly rely on homogeneous graph encoding, are limited by their inability to integrate external knowledge and represent molecular structures across different levels of granularity. To address these limitations, we propose a paradigm shift by encoding molecular graphs into heterogeneous structures, introducing a novel framework: Knowledge-aware Contrastive Heterogeneous Molecular Graph Learning (KCHML). This approach leverages contrastive learning to enrich molecular representations with embedded external knowledge. KCHML conceptualizes molecules through three distinct graph views-molecular, elemental, and pharmacological-enhanced by heterogeneous molecular graphs and a dual message-passing mechanism. This design offers a comprehensive representation for property prediction, as well as for downstream tasks such as drug-drug interaction (DDI) prediction. Extensive benchmarking demonstrates KCHML's superiority over state-of-the-art molecular property prediction models, underscoring its ability to capture intricate molecular features.

cs.LG↗

arXiv2025

Can Molecular Evolution Mechanism Enhance Molecular Representation?

Molecular evolution is the process of simulating the natural evolution of molecules in chemical space to explore potential molecular structures and properties. The relationships between similar molecules are often described through transformations such as adding, deleting, and modifying atoms and chemical bonds, reflecting specific evolutionary paths. Existing molecular representation methods mainly focus on mining data, such as atomic-level structures and chemical bonds directly from the molecules, often overlooking their evolutionary history. Consequently, we aim to explore the possibility of enhancing molecular representations by simulating the evolutionary process. We extract and analyze the changes in the evolutionary pathway and explore combining it with existing molecular representations. Therefore, this paper proposes the molecular evolutionary network (MEvoN) for molecular representations. First, we construct the MEvoN using molecules with a small number of atoms and generate evolutionary paths utilizing similarity calculations. Then, by modeling the atomic-level changes, MEvoN reveals their impact on molecular properties. Experimental results show that the MEvoN-based molecular property prediction method significantly improves the performance of traditional end-to-end algorithms on several molecular datasets. The code is available at https://anonymous.4open.science/r/MEvoN-7416/.

q-bio.BM↗

arXiv2025

Hierarchical Superpixel Segmentation via Structural Information Theory

Superpixel segmentation is a foundation for many higher-level computer vision tasks, such as image segmentation, object recognition, and scene understanding. Existing graph-based superpixel segmentation methods typically concentrate on the relationships between a given pixel and its directly adjacent pixels while overlooking the influence of non-adjacent pixels. These approaches do not fully leverage the global information in the graph, leading to suboptimal segmentation quality. To address this limitation, we present SIT-HSS, a hierarchical superpixel segmentation method based on structural information theory. Specifically, we first design a novel graph construction strategy that incrementally explores the pixel neighborhood to add edges based on 1-dimensional structural entropy (1D SE). This strategy maximizes the retention of graph information while avoiding an overly complex graph structure. Then, we design a new 2D SE-guided hierarchical graph partitioning method, which iteratively merges pixel clusters layer by layer to reduce the graph's 2D SE until a predefined segmentation scale is achieved. Experimental results on three benchmark datasets demonstrate that the SIT-HSS performs better than state-of-the-art unsupervised superpixel segmentation algorithms. The source code is available at \url{https://github.com/SELGroup/SIT-HSS}.

cs.CV↗

arXiv2024

Differential Evolution Integrated Hybrid Deep Learning Model for Object Detection in Pre-made Dishes

With the continuous improvement of people's living standards and fast-paced working conditions, pre-made dishes are becoming increasingly popular among families and restaurants due to their advantages of time-saving, convenience, variety, cost-effectiveness, standard quality, etc. Object detection is a key technology for selecting ingredients and evaluating the quality of dishes in the pre-made dishes industry. To date, many object detection approaches have been proposed. However, accurate object detection of pre-made dishes is extremely difficult because of overlapping occlusion of ingredients, similarity of ingredients, and insufficient light in the processing environment. As a result, the recognition scene is relatively complex and thus leads to poor object detection by a single model. To address this issue, this paper proposes a Differential Evolution Integrated Hybrid Deep Learning (DEIHDL) model. The main idea of DEIHDL is three-fold: 1) three YOLO-based and transformer-based base models are developed respectively to increase diversity for detecting objects of pre-made dishes, 2) the three base models are integrated by differential evolution optimized self-adjusting weights, and 3) weighted boxes fusion strategy is employed to score the confidence of the three base models during the integration. As such, DEIHDL possesses the multi-performance originating from the three base models to achieve accurate object detection in complex pre-made dish scenes. Extensive experiments on real datasets demonstrate that the proposed DEIHDL model significantly outperforms the base models in detecting objects of pre-made dishes.

cs.CV↗

arXiv2024

Towards a Better Model with Dual Transformer for Drug Response Prediction

GNN-based methods have achieved excellent results as a mainstream task in drug response prediction tasks in recent years. Traditional GNN methods use only the atoms in a drug molecule as nodes to obtain the representation of the molecular graph through node information passing, whereas the method using the transformer can only extract information about the nodes. However, the covalent bonding and chirality of a drug molecule have a great influence on the pharmacological properties of the molecule, and these information are implied in the chemical bonds formed by the edges between the atoms. In addition, CNN methods for modelling cell lines genomics sequences can only perceive local rather than global information about the sequence. In order to solve the above problems, we propose the decoupled dual transformer structure with edge embedded for drug respond prediction (TransEDRP), which is used for the representation of cell line genomics and drug respectively. For the drug branch, we encoded the chemical bond information within the molecule as the embedding of the edge in the molecular graph, extracted the global structural and biochemical information of the drug molecule using graph transformer. For the branch of cell lines genomics, we use the multi-headed attention mechanism to globally represent the genomics sequence. Finally, the drug and genomics branches are fused to predict IC50 values through the transformer layer and the fully connected layer, which two branches are different modalities. Extensive experiments have shown that our method is better than the current mainstream approach in all evaluation indicators.

q-bio.BM↗

arXiv2024

Towards Robust Cross-Domain Recommendation with Joint Identifiability of User Preference

Recent cross-domain recommendation (CDR) studies assume that disentangled domain-shared and domain-specific user representations can mitigate domain gaps and facilitate effective knowledge transfer. However, achieving perfect disentanglement is challenging in practice, because user behaviors in CDR are highly complex, and the true underlying user preferences cannot be fully captured through observed user-item interactions alone. Given this impracticability, we instead propose to model {\it joint identifiability} that establishes unique correspondence of user representations across domains, ensuring consistent preference modeling even when user behaviors exhibit shifts in different domains. To achieve this, we introduce a hierarchical user preference modeling framework that organizes user representations by the neural network encoder's depth, allowing separate treatment of shallow and deeper subspaces. In the shallow subspace, our framework models the interest centroids for each user within each domain, probabilistically determining the users' interest belongings and selectively aligning these centroids across domains to ensure fine-grained consistency in domain-irrelevant features. For deeper subspace representations, we enforce joint identifiability by decomposing it into a shared cross-domain stable component and domain-variant components, linked by a bijective transformation for unique correspondence. Empirical studies on real-world CDR tasks with varying domain correlations demonstrate that our method consistently surpasses state-of-the-art, even with weakly correlated tasks, highlighting the importance of joint identifiability in achieving robust CDR.

cs.IR↗

arXiv2024

Learning To Sample the Meta-Paths for Social Event Detection

Social media data is inherently rich, as it includes not only text content, but also users, geolocation, entities, temporal information, and their relationships. This data richness can be effectively modeled using heterogeneous information networks (HINs) as it can handle multiple types of nodes and relationships, allowing for a comprehensive representation of complex interactions within social data. Meta-path-based methods use the sequences of relationships between different types of nodes in an HIN to capture the diverse and rich relationships within the social networks. However, the performance of social event detection methods is highly sensitive to the selection of meta-paths and existing meta-path based detectors either rely on human efforts or struggle to determining the effective meta-path set for model training and evaluation. In order to automatically discover the most important meta-paths, we propose a simple, yet effective, end-to-end Learning To Sample (LTS) framework for meta-path searching. Specifically, we build graphs that contain not only user profiles, textual content, and details about entities, but also the intricate relationships among them. The prioritized meta-paths, based on their importance, are sampled from the maintained distribution and their features are constructed before feeding into the social event detector. After picking up the top-ranked meta-paths, we streamline the exponential increment of meta-path combinations into a finite set of highly influential ones. The chosen meta-paths, along with their respective weights, are then used to train our social event detection model. As an alternative to social event detector training, we further propose an extra non-parametric evaluation process in order to determine the importance of each meta-path, which can further guide the paths sampling during model training.

cs.SI↗

arXiv2024

DA-MoE: Addressing Depth-Sensitivity in Graph-Level Analysis through Mixture of Experts

Graph neural networks (GNNs) are gaining popularity for processing graph-structured data. In real-world scenarios, graph data within the same dataset can vary significantly in scale. This variability leads to depth-sensitivity, where the optimal depth of GNN layers depends on the scale of the graph data. Empirically, fewer layers are sufficient for message passing in smaller graphs, while larger graphs typically require deeper networks to capture long-range dependencies and global features. However, existing methods generally use a fixed number of GNN layers to generate representations for all graphs, overlooking the depth-sensitivity issue in graph structure data. To address this challenge, we propose the depth adaptive mixture of expert (DA-MoE) method, which incorporates two main improvements to GNN backbone: \textbf{1)} DA-MoE employs different GNN layers, each considered an expert with its own parameters. Such a design allows the model to flexibly aggregate information at different scales, effectively addressing the depth-sensitivity issue in graph data. \textbf{2)} DA-MoE utilizes GNN to capture the structural information instead of the linear projections in the gating network. Thus, the gating network enables the model to capture complex patterns and dependencies within the data. By leveraging these improvements, each expert in DA-MoE specifically learns distinct graph patterns at different scales. Furthermore, comprehensive experiments on the TU dataset and open graph benchmark (OGB) have shown that DA-MoE consistently surpasses existing baselines on various tasks, including graph, node, and link-level analyses. The code are available at \url{https://github.com/Celin-Yao/DA-MoE}.

cs.LG↗

arXiv2024

Dual-perspective Cross Contrastive Learning in Graph Transformers

Graph contrastive learning (GCL) is a popular method for leaning graph representations by maximizing the consistency of features across augmented views. Traditional GCL methods utilize single-perspective i.e. data or model-perspective) augmentation to generate positive samples, restraining the diversity of positive samples. In addition, these positive samples may be unreliable due to uncontrollable augmentation strategies that potentially alter the semantic information. To address these challenges, this paper proposed a innovative framework termed dual-perspective cross graph contrastive learning (DC-GCL), which incorporates three modifications designed to enhance positive sample diversity and reliability: 1) We propose dual-perspective augmentation strategy that provide the model with more diverse training data, enabling the model effective learning of feature consistency across different views. 2) From the data perspective, we slightly perturb the original graphs using controllable data augmentation, effectively preserving their semantic information. 3) From the model perspective, we enhance the encoder by utilizing more powerful graph transformers instead of graph neural networks. Based on the model's architecture, we propose three pruning-based strategies to slightly perturb the encoder, providing more reliable positive samples. These modifications collectively form the DC-GCL's foundation and provide more diverse and reliable training inputs, offering significant improvements over traditional GCL methods. Extensive experiments on various benchmarks demonstrate that DC-GCL consistently outperforms different baselines on various datasets and tasks.

cs.LG↗

arXiv2024

Graph Neural Networks for Brain Graph Learning: A Survey

Exploring the complex structure of the human brain is crucial for understanding its functionality and diagnosing brain disorders. Thanks to advancements in neuroimaging technology, a novel approach has emerged that involves modeling the human brain as a graph-structured pattern, with different brain regions represented as nodes and the functional relationships among these regions as edges. Moreover, graph neural networks (GNNs) have demonstrated a significant advantage in mining graph-structured data. Developing GNNs to learn brain graph representations for brain disorder analysis has recently gained increasing attention. However, there is a lack of systematic survey work summarizing current research methods in this domain. In this paper, we aim to bridge this gap by reviewing brain graph learning works that utilize GNNs. We first introduce the process of brain graph modeling based on common neuroimaging data. Subsequently, we systematically categorize current works based on the type of brain graph generated and the targeted research problems. To make this research accessible to a broader range of interested researchers, we provide an overview of representative methods and commonly used datasets, along with their implementation sources. Finally, we present our insights on future research directions. The repository of this survey is available at \url{https://github.com/XuexiongLuoMQ/Awesome-Brain-Graph-Learning-with-GNNs}.

cs.LG↗

arXiv2024

Regressor-free Molecule Generation to Support Drug Response Prediction

Drug response prediction (DRP) is a crucial phase in drug discovery, and the most important metric for its evaluation is the IC50 score. DRP results are heavily dependent on the quality of the generated molecules. Existing molecule generation methods typically employ classifier-based guidance, enabling sampling within the IC50 classification range. However, these methods fail to ensure the sampling space range's effectiveness, generating numerous ineffective molecules. Through experimental and theoretical study, we hypothesize that conditional generation based on the target IC50 score can obtain a more effective sampling space. As a result, we introduce regressor-free guidance molecule generation to ensure sampling within a more effective space and support DRP. Regressor-free guidance combines a diffusion model's score estimation with a regression controller model's gradient based on number labels. To effectively map regression labels between drugs and cell lines, we design a common-sense numerical knowledge graph that constrains the order of text representations. Experimental results on the real-world dataset for the DRP task demonstrate our method's effectiveness in drug discovery. The code is available at:https://anonymous.4open.science/r/RMCD-DBD1.

q-bio.MN↗

arXiv2024

A Cross-Field Fusion Strategy for Drug-Target Interaction Prediction

Drug-target interaction (DTI) prediction is a critical component of the drug discovery process. In the drug development engineering field, predicting novel drug-target interactions is extremely crucial.However, although existing methods have achieved high accuracy levels in predicting known drugs and drug targets, they fail to utilize global protein information during DTI prediction. This leads to an inability to effectively predict interaction the interactions between novel drugs and their targets. As a result, the cross-field information fusion strategy is employed to acquire local and global protein information. Thus, we propose the siamese drug-target interaction SiamDTI prediction method, which utilizes a double channel network structure for cross-field supervised learning.Experimental results on three benchmark datasets demonstrate that SiamDTI achieves higher accuracy levels than other state-of-the-art (SOTA) methods on novel drugs and targets.Additionally, SiamDTI's performance with known drugs and targets is comparable to that of SOTA approachs. The code is available at https://anonymous.4open.science/r/DDDTI-434D.

q-bio.BM↗

arXiv2024

Where to Mask: Structure-Guided Masking for Graph Masked Autoencoders

Graph masked autoencoders (GMAE) have emerged as a significant advancement in self-supervised pre-training for graph-structured data. Previous GMAE models primarily utilize a straightforward random masking strategy for nodes or edges during training. However, this strategy fails to consider the varying significance of different nodes within the graph structure. In this paper, we investigate the potential of leveraging the graph's structural composition as a fundamental and unique prior in the masked pre-training process. To this end, we introduce a novel structure-guided masking strategy (i.e., StructMAE), designed to refine the existing GMAE models. StructMAE involves two steps: 1) Structure-based Scoring: Each node is evaluated and assigned a score reflecting its structural significance. Two distinct types of scoring manners are proposed: predefined and learnable scoring. 2) Structure-guided Masking: With the obtained assessment scores, we develop an easy-to-hard masking strategy that gradually increases the structural awareness of the self-supervised reconstruction task. Specifically, the strategy begins with random masking and progresses to masking structure-informative nodes based on the assessment scores. This design gradually and effectively guides the model in learning graph structural information. Furthermore, extensive experiments consistently demonstrate that our StructMAE method outperforms existing state-of-the-art GMAE models in both unsupervised and transfer learning tasks. Codes are available at https://github.com/LiuChuang0059/StructMAE.

cs.LG↗

arXiv2024

Heterogeneous Subgraph Transformer for Fake News Detection

Fake news is pervasive on social media, inflicting substantial harm on public discourse and societal well-being. We investigate the explicit structural information and textual features of news pieces by constructing a heterogeneous graph concerning the relations among news topics, entities, and content. Through our study, we reveal that fake news can be effectively detected in terms of the atypical heterogeneous subgraphs centered on them, which encapsulate the essential semantics and intricate relations between news elements. However, suffering from the heterogeneity, exploring such heterogeneous subgraphs remains an open problem. To bridge the gap, this work proposes a heterogeneous subgraph transformer (HeteroSGT) to exploit subgraphs in our constructed heterogeneous graph. In HeteroSGT, we first employ a pre-trained language model to derive both word-level and sentence-level semantics. Then the random walk with restart (RWR) is applied to extract subgraphs centered on each news, which are further fed to our proposed subgraph Transformer to quantify the authenticity. Extensive experiments on five real-world datasets demonstrate the superior performance of HeteroSGT over five baselines. Further case and ablation studies validate our motivation and demonstrate that performance improvement stems from our specially designed components.

cs.CL↗

arXiv2024

Online Alternating Direction Method of Multipliers for Online Composite Optimization

In this paper, we investigate regrets of an online semi-proximal alternating direction method of multiplier (Online-spADMM) for solving online linearly constrained convex composite optimization problems. Under mild conditions, we establish ${\rm O}(\sqrt{N})$ objective regret and ${\rm O}(\sqrt{N})$ constraint violation regret at round $N$ when the dual step-length is taken in $(0,(1 +\sqrt{5})/2)$ and penalty parameter $σ$ is taken as $\sqrt{N}$. We explain that the optimal value of parameter $σ$ is of order ${\rm O}(\sqrt{N})$. Like the semi-proximal alternating direction method of multiplier (spADMM), Online-spADMM has the advantage to resolve the potentially non-solvability issue of the subproblems efficiently. We show the usefulness of the obtained results when applied to different types of online optimization problems and verify the theoretical result by numerical experiments}. The inequalities established for Online-spADMM are also used to develop iteration complexity of the average update of spADMM for solving linearly constrained convex composite optimization problems.

math.OC↗

arXiv2024

A Comprehensive Survey on Graph Summarization with Graph Neural Networks

As large-scale graphs become more widespread, more and more computational challenges with extracting, processing, and interpreting large graph data are being exposed. It is therefore natural to search for ways to summarize these expansive graphs while preserving their key characteristics. In the past, most graph summarization techniques sought to capture the most important part of a graph statistically. However, today, the high dimensionality and complexity of modern graph data are making deep learning techniques more popular. Hence, this paper presents a comprehensive survey of progress in deep learning summarization techniques that rely on graph neural networks (GNNs). Our investigation includes a review of the current state-of-the-art approaches, including recurrent GNNs, convolutional GNNs, graph autoencoders, and graph attention networks. A new burgeoning line of research is also discussed where graph reinforcement learning is being used to evaluate and improve the quality of graph summaries. Additionally, the survey provides details of benchmark datasets, evaluation metrics, and open-source tools that are often employed in experimentation settings, along with a detailed comparison, discussion, and takeaways for the research community focused on graph summarization. Finally, the survey concludes with a number of open research challenges to motivate further study in this area.

cs.LG↗

arXiv2023

Hy-DeFake: Hypergraph Neural Networks for Detecting Fake News in Online Social Networks

Nowadays social media is the primary platform for people to obtain news and share information. Combating online fake news has become an urgent task to reduce the damage it causes to society. Existing methods typically improve their fake news detection performances by utilizing textual auxiliary information (such as relevant retweets and comments) or simple structural information (i.e., graph construction). However, these methods face two challenges. First, an increasing number of users tend to directly forward the source news without adding comments, resulting in a lack of textual auxiliary information. Second, simple graphs are unable to extract complex relations beyond pairwise association in a social context. Given that real-world social networks are intricate and involve high-order relations, we argue that exploring beyond pairwise relations between news and users is crucial for fake news detection. Therefore, we propose constructing an attributed hypergraph to represent non-textual and high-order relations for user participation in news spreading. We also introduce a hypergraph neural network-based method called Hy-DeFake to tackle the challenges. Our proposed method captures semantic information from news content, credibility information from involved users, and high-order correlations between news and users to learn distinctive embeddings for fake news detection. The superiority of Hy-DeFake is demonstrated through experiments conducted on four widely-used datasets, and it is compared against eight baselines using four evaluation metrics.

cs.SI↗