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Jiamin Wu

Publications and source records attributed to Jiamin Wu.

At least 19 recordsLinked to original sources

EasyBCI Agent: Towards Universal Neural Data Preprocessing for Brain-Computer Interfaces

Brain-computer interfaces translate neural activity into device commands, yet their performance hinges on preprocessing that remains manual, expert-dependent and poorly reproducible. Large language model agents can automate scientific coding, but existing systems lack the modality coverage, raw-data isolation, experience accumulation and domain oversight that neural preprocessing requires. We introduce EasyBCI, a two-phase LLM agent that plans and executes preprocessing pipelines for six signal types. A Plan Agent profiles each recording into a text-only Data Fingerprint that never exposes raw data to the model and selects a literature-grounded operator sequence. An Execution Agent generates, runs and self-corrects code until quality criteria are met, while a quality-gated experience system retains validated strategies as reusable skills. A domain expert intervenes at two decision gates, retaining human judgement where undetected error can invalidate downstream analyses. Evaluation on EEG with a fixed linear classifier shows that all five EasyBCI backbones preserve more task-relevant separability than the manual pipeline. Under same-backbone comparison, EasyBCI outperforms general-purpose coding agents on both label schemes for four of five configurations. EasyBCI extends to five additional modalities spanning nearly three orders of magnitude in sampling rate, producing complete reproducible pipelines with recorded decision provenance. These results indicate that domain-specific orchestration can bring auditable preprocessing within reach of laboratories lacking dedicated expertise, illustrating design principles applicable to AI agents in other scientific domains.

q-bio.QM

SeekBrain: An Autonomous Multi-Agent System for Accelerating Neuroscience Discovery

Modern neuroscience relies on integrating multi-scale, multimodal datasets to uncover the neural principles underlying intelligence. However, analytical challenges posed by highly heterogeneous data and fragmented workflows increasingly constrain discoveries. Here we introduce SeekBrain, an autonomous multi-agent framework designed to accelerate neuroscience discovery through domain-grounded hierarchical planning and cross-modal data analysis. SeekBrain dynamically constructs a repertoire of analysis recipes extracted from code-paper pairs. By coupling this codified expertise with agentic planning and execution engines, the framework scalably generates hypotheses and analytical pipelines on demand. Systematic evaluation on the expert-annotated BrainArena benchmark demonstrates that SeekBrain substantially outperforms state-of-the-art agent baselines across various analysis tasks. Crucially, when deployed in real-world research, SeekBrain integrated behavioral, neural, and anatomical data to reveal structured, distributed neural representations of larval zebrafish behavior and a shared axis of regional decoding strength across the brain in a mouse decision-making task. These results establish SeekBrain as a scalable and practical tool for accelerating data-driven discoveries in neuroscience.

cs.MA

ResearchClawBench: A Benchmark for End-to-End Autonomous Scientific Research

AI coding agents are increasingly used for scientific work, but their end-to-end autonomous research capability remains difficult to verify. We present ResearchClawBench, a benchmark for evaluating autonomous scientific research across 40 tasks from 10 scientific domains. Each task is grounded in a real published paper, provides related literature and raw data, and hides the target paper during evaluation. Expert-curated multimodal rubrics decompose the target scientific artifacts into weighted criteria, enabling evaluation of target-paper-level re-discovery while leaving room for new discovery. We evaluate seven autonomous research (auto-research) agents under a unified protocol and seventeen native LLMs through the lightweight ResearchHarness. Current systems remain far from reliable re-discovery: the strongest autonomous agent, Claude Code, averages 21.5, and the strongest ResearchHarness LLM, Claude-Opus-4.7, averages 20.7, with an LLM frontier mean of only 26.5. Error analysis shows that failures concentrate in experimental protocol mismatch, evidence mismatch, and missing scientific core. ResearchClawBench provides a reproducible evaluation frontier for measuring progress toward autonomous scientific research.

cs.LG

Token-Sparse Medical Multimodal Reasoning via Dual-Stream Reinforcement Learning

Vision-language models (VLMs) combining reinforcement learning (RL) ignite remarkable progress in multimodal reasoning, yet still struggle with medical images, which typically exhibit extremely sparse visual evidence to inform clinical decision-making. We recognize that pruning visual tokens outside the grounding region greatly enhances medical reasoning. However, a united RL framework for active visual token pruning (VTP) and medical multimodal reasoning remains unestablished. Here, we propose a dual-stream RL framework, ViToS, to fulfill token pruning and question answering. ViToS trains one policy model with two task branches, where one focuses on grounding while the other conducts token-sparse reasoning after VTP. Furthermore, we solve the coupled policy learning problem by introducing the cross-feedback sequential optimization, avoiding gradient conflict and facilitating convergence of the shared policy model. Evaluated on seven medical benchmarks, our method reduces visual tokens to 77% of the original sequence length while achieving a 108.27% relative performance on Lingshu-7B and 104.16% relative performance on HuatuoGPT-Vision-7B. Overall, ViToS delivers superior performance and inference speedup, establishing an efficient paradigm for medical multimodal reasoning.

cs.CV

BrainJanus: A Unified Model for Understanding and Generation across Brain, Vision, and Language

Modeling the bidirectional correspondence between external sensory stimuli and internal neural activity has emerged as a critical frontier in neuroscience. However, existing approaches predominantly treat brain encoding and decoding as isolated tasks, relying heavily on unimodal alignment and external priors while overlooking the brain's intrinsic nature as a multimodal integration system. To address these limitations, we propose BrainJanus, the first unified brain model that integrates brain, vision, and language within a single framework. Specifically, we introduce a Unified Brain Tokenizer to quantize continuous neural dynamics into discrete tokens aligned with visual and linguistic representations in a shared Omni space. Building on this, we utilize an All-in-One autoregressive architecture that leverages next-token prediction to enable seamless any-to-any generation, which encompasses image-to-brain and text-to-brain encoding, and brain-to-image and brain-to-text decoding. Extensive experiments demonstrate that BrainJanus achieves superior performance across diverse benchmarks. Furthermore, our framework exhibits zero-shot generalization and preserves interpretable biological topography, highlighting its potential as a general-purpose brain modeling paradigm. The code is available at \href{https://github.com/HaitaoWuTJU/BrainJanus}{GitHub}.

cs.CV

Timestep Rescheduling in Diffusion Inversion

Diffusion inversion, which maps images back to the Gaussian latent space of a diffusion model, is a critical task for image reconstruction and editing. While DDIM enables fast deterministic inversion, it inherently introduces deviations that accumulate into noticeable inversion errors. Existing methods often address this by solving a fixed-point problem but largely overlook how the selection of the diffusion timestep in the noise scheduler influences inversion fidelity. In this work, we reveal that the deviation scale in diffusion inversion is strongly dependent on the timestep size, and exhibits a parabolic trend, with larger errors concentrated at both small and large timesteps. Based on this finding, we propose a simple yet effective nonuniform timestep scheduler that integrates a global rescaling with a local dynamic programming based rescheduling, enabling a strategic allocation of computational effort that minimizes the overall inversion error and preserves higher inversion accuracy. Our method serves as an off-the-shelf enhancement for existing inversion techniques and requires no extra parameters or computational overhead. Through extensive experiments, we verify that integrating our scheduler consistently boosts the performance of existing inversion methods, achieving superior results in image reconstruction and editing.

cs.CV

Adversarial Attacks Already Tell the Answer: Directional Bias-Guided Test-time Defense for Vision-Language Models

Vision-Language Models (VLMs), such as CLIP, have shown strong zero-shot generalization but remain highly vulnerable to adversarial perturbations, posing serious risks in real-world applications. Test-time defenses for VLMs have recently emerged as a promising and efficient approach to defend against adversarial attacks without requiring costly large-scale retraining. In this work, we uncover a surprising phenomenon: under diverse input transformations, adversarial images in CLIP's feature space consistently shift along a dominant direction, in contrast to the dispersed patterns of clean images. We hypothesize that this dominant shift, termed the Defense Direction, opposes the adversarial shift, pointing features back toward their correct class centers. Building on this insight, we propose Directional Bias-guided Defense (DBD), a test-time framework that estimates the Defense Direction and employs a DB-score-based two-stream reconstruction strategy to recover robust representations. Experiments on 15 datasets demonstrate that DBD not only achieves SOTA adversarial robustness while preserving clean accuracy, but also reveals the counterintuitive result that adversarial accuracy can even surpass clean accuracy. This demonstrates that adversarial perturbations inherently encode directional priors about the true decision boundary.

cs.CV

UniMind: Unleashing the Power of LLMs for Unified Multi-Task Brain Decoding

Decoding human brain activity from electroencephalography (EEG) signals is a central challenge at the intersection of neuroscience and artificial intelligence, enabling diverse applications in mental state assessment, clinical monitoring, and human-machine interaction. Recent efforts have extensively explored EEG-based brain foundation models for generalized brain decoding, employing large-scale training on multiple datasets. However, most of these attempts struggle with generalizability and fail to achieve satisfactory performance without task-specific tuning due to pronounced inherent heterogeneity among decoding tasks. To address these challenges, we present UniMind, a general-purpose EEG foundation model for unified multi-task brain decoding by uniquely unleashing the power of large language models to comprehend complex neural patterns. UniMind offers several advantages. First, we design a Neuro-Language Connector to bridge the modality gap between neural signals and large language models, distilling and transforming the spatiotemporal neural patterns of EEG data into representations understandable by language models. Second, a Task-aware Query Selection module is proposed to inject task-awareness into the cross-modal alignment by dynamically generating task-adaptive query tokens, enabling learning of task-relevant neural patterns across diverse tasks. Extensive experiments across ten datasets demonstrate that UniMind substantially outperforms state-of-the-art multi-task decoding models, with an average gain of 12 percent, while also offering valuable neuroscientific insights into neural functional correlations across tasks. The code is available at https://github.com/kaleidoyao/UniMind.

cs.HC

Deeper detection limits in astronomical imaging using self-supervised spatiotemporal denoising

The detection limit of astronomical imaging observations is limited by several noise sources. Some of that noise is correlated between neighbouring image pixels and exposures, so in principle could be learned and corrected. We present an astronomical self-supervised transformer-based denoising algorithm (ASTERIS), that integrates spatiotemporal information across multiple exposures. Benchmarking on mock data indicates that ASTERIS improves detection limits by 1.0 magnitude at 90% completeness and purity, while preserving the point spread function and photometric accuracy. Observational validation using data from the James Webb Space Telescope (JWST) and Subaru telescope identifies previously undetectable features, including low-surface-brightness galaxy structures and gravitationally-lensed arcs. Applied to deep JWST images, ASTERIS identifies three times more redshift > 9 galaxy candidates, with rest-frame ultraviolet luminosity 1.0 magnitude fainter, than previous methods.

astro-ph.IM

High-speed optical microscopy for neural voltage imaging: Methods, trade-offs, and opportunities

High-speed optical imaging of dynamic neuronal activity is essential yet challenging in neuroscience. While calcium imaging has been firmly established as a workhorse technique for monitoring neuronal activity, its limited temporal resolution and indirect measurement restrict its ability to capture rapid inhibitory and excitatory events and subthreshold voltage oscillations. In contrast, voltage imaging directly measures membrane potential fluctuations, providing a comprehensive and precise representation of neuronal circuit dynamics. Recent advancements in voltage-sensitive dyes and, particularly, genetically encoded voltage indicators have significantly enhanced the feasibility of voltage imaging, prompting the development of advanced fluorescence microscopy methods optimized for high-speed acquisition. However, achieving millisecond-scale temporal resolution remains challenging due to inherent trade-offs among imaging speed, spatial resolution, and signal-to-noise ratio. Conventional raster-scanning approaches, including confocal microscopy, are fundamentally limited by their slow frame rates, precluding the capture of rapid neuronal events from multiple neurons simultaneously. Alternative techniques such as random-access scanning, spatiotemporal multiplexing, and computational optical imaging have successfully addressed these constraints, enabling kilohertz-level imaging of neuronal activity in both two-dimensional and three-dimensional contexts. This review summarizes recent progress in high-speed optical microscopy for voltage imaging and discusses its transformative potential for neuroscience research.

physics.optics

PaceLLM: Brain-Inspired Large Language Models for Long-Context Understanding

While Large Language Models (LLMs) demonstrate strong performance across domains, their long-context capabilities are limited by transient neural activations causing information decay and unstructured feed-forward network (FFN) weights leading to semantic fragmentation. Inspired by the brain's working memory and cortical modularity, we propose PaceLLM, featuring two innovations: (1) a Persistent Activity (PA) Mechanism that mimics prefrontal cortex (PFC) neurons' persistent firing by introducing an activation-level memory bank to dynamically retrieve, reuse, and update critical FFN states, addressing contextual decay; and (2) Cortical Expert (CE) Clustering that emulates task-adaptive neural specialization to reorganize FFN weights into semantic modules, establishing cross-token dependencies and mitigating fragmentation. Extensive evaluations show that PaceLLM achieves 6% improvement on LongBench's Multi-document QA and 12.5-17.5% performance gains on Infinite-Bench tasks, while extending measurable context length to 200K tokens in Needle-In-A-Haystack (NIAH) tests. This work pioneers brain-inspired LLM optimization and is complementary to other works. Besides, it can be generalized to any model and enhance their long-context performance and interpretability without structural overhauls.

q-bio.NC

NeuroFlow: Toward Unified Visual Encoding and Decoding from Neural Activity

Visual encoding and decoding models act as gateways to understanding the neural mechanisms underlying human visual perception. Typically, visual encoding models that predict brain activity from stimuli and decoding models that reproduce stimuli from brain activity are treated as distinct tasks, requiring separate models and training procedures. This separation is inefficient and fails to model the consistency between encoding and decoding processes. To address this limitation, we propose NeuroFlow, the first unified framework that jointly models visual encoding and decoding from neural activity within a single flow model. NeuroFlow introduces two key components: (1) NeuroVAE is designed as a variational backbone to model neural variability and establish a compact, semantically structured latent space for bidirectional modeling across visual and neural modalities. (2) Cross-modal Flow Matching (XFM) bypasses the typical paradigm of noise-to-data diffusion guided by a specific modality condition, instead learning a reversibly consistent flow model between visual and neural latent distributions. For the first time, visual encoding and decoding are reformulated as a time-dependent, reversible process within a shared latent space for unified modeling. Empirical results demonstrate that NeuroFlow achieves superior overall performance in visual encoding and decoding tasks with higher computational efficiency compared to any isolated methods. We further analyze principal factors that steer the model toward encoding-decoding consistency and, through brain functional analyses, demonstrate that NeuroFlow captures consistent activation patterns underlying neural variability. NeuroFlow marks a major step toward unified visual encoding and decoding from neural activity, providing mechanistic insights that inform future bidirectional visual brain-computer interfaces.

cs.LG

OralAgent: Integrating Reasoning, Tools, and Knowledge for Interactive Dental Image Analysis

Dental image analysis plays a pivotal role in supporting accurate diagnosis and treatment planning in oral healthcare. Although recent advances have produced dental AI models for specific tasks and individual imaging modalities, their isolated designs limit practical use in real-world clinical workflows. In this paper, we present OralAgent, the first dental-specialized AI agent that unifies multimodal reasoning, tool-based decision-making, and knowledge-grounded retrieval within an end-to-end automated framework. It integrates 22 visual analysis tools and 368 widely-used classical dental textbooks, enabling autonomous reasoning, planning, tool use, knowledge retrieval, and multi-step workflow execution. Furthermore, we introduce OralCorpus, a large-scale, high-quality bilingual textual resource containing 134.8M tokens curated for dental retrieval-augmented generation (RAG). To evaluate models' multidisciplinary dental knowledge, we construct OralQA-ZH, a Chinese multiple-choice question benchmark consisting of 798 items across eleven oral subspecialties. Extensive experiments demonstrate that OralAgent achieves state-of-the-art performance on the MMOral-Uni, MMOral-OPG, and OralQA-ZH benchmarks, highlighting its effectiveness, interpretability, and adaptability in real-world clinical settings. The code and models are publicly available at https://github.com/isjinghao/OralAgent.

cs.CL

ViRC: Enhancing Visual Interleaved Mathematical CoT with Reason Chunking

CoT has significantly enhanced the reasoning ability of LLMs while it faces challenges when extended to multimodal domains, particularly in mathematical tasks. Existing MLLMs typically perform textual reasoning solely from a single static mathematical image, overlooking dynamic visual acquisition during reasoning. In contrast, humans repeatedly examine visual image and employ step-by-step reasoning to prove intermediate propositions. This strategy of decomposing the problem-solving process into key logical nodes adheres to Miller's Law in cognitive science. Inspired by this insight, we propose a ViRC framework for multimodal mathematical tasks, introducing a Reason Chunking mechanism that structures multimodal mathematical CoT into consecutive Critical Reasoning Units (CRUs) to simulate human expert problem-solving patterns. CRUs ensure intra-unit textual coherence for intermediate proposition verification while integrating visual information across units to generate subsequent propositions and support structured reasoning. To this end, we present CRUX dataset by using three visual tools and four reasoning patterns to provide explicitly annotated CRUs across multiple reasoning paths for each mathematical problem. Leveraging the CRUX dataset, we propose a progressive training strategy inspired by human cognitive learning, which includes Instructional SFT, Practice SFT, and Strategic RL, aimed at further strengthening the Reason Chunking ability of the model. The resulting ViRC-7B model achieves a 18.8% average improvement over baselines across multiple mathematical benchmarks. Code is available at https://github.com/Leon-LihongWang/ViRC.

cs.CV

Modeling of Human Body-coupled Electric Field Interference in Unshielded Ultra-Low Field MRI

Portable ultra-low field MRI (ULF-MRI) systems operated in unshielded environments are susceptible to electromagnetic interference (EMI). Subject presence in the imaging region will lead to substantial noise increases, yet the dominant coupling mechanism remains insufficiently characterized. We develop a lumped-parameter circuit model of the coupled environment-body-receiver system. The model indicates that ambient time-varying electric fields induce a body common-mode potential, which is converted into differential-mode noise through capacitive imbalance between the head and the receive-coil terminals, yielding strong dependence on subject position and geometry. Circuit analysis, simulations, and controlled experiments support the model, with predicted imbalance consistent with measured noise variations. Guided by this mechanism, we implement a capacitive low-impedance bypass to clamp the body potential, achieving an approximately 3.5-fold SNR improvement on a 50 mT prototype. The proposed model offers a compact circuit-based tool for analyzing and mitigating human body-coupled electric-field interference in portable ULF-MRI.

eess.SP

InternAgent-1.5: A Unified Agentic Framework for Long-Horizon Autonomous Scientific Discovery

We introduce InternAgent-1.5, a unified system designed for end-to-end scientific discovery across computational and empirical domains. The system is built on a structured architecture composed of three coordinated subsystems for generation, verification, and evolution. These subsystems are supported by foundational capabilities for deep research, solution optimization, and long horizon memory. The architecture allows InternAgent-1.5 to operate continuously across extended discovery cycles while maintaining coherent and improving behavior. It also enables the system to coordinate computational modeling and laboratory experimentation within a single unified system. We evaluate InternAgent-1.5 on scientific reasoning benchmarks such as GAIA, HLE, GPQA, and FrontierScience, and the system achieves leading performance that demonstrates strong foundational capabilities. Beyond these benchmarks, we further assess two categories of discovery tasks. In algorithm discovery tasks, InternAgent-1.5 autonomously designs competitive methods for core machine learning problems. In empirical discovery tasks, it executes complete computational or wet lab experiments and produces scientific findings in earth, life, biological, and physical domains. Overall, these results show that InternAgent-1.5 provides a general and scalable framework for autonomous scientific discovery.

cs.AI

SciDataCopilot: An Agentic Data Preparation Framework for AGI-driven Scientific Discovery

The current landscape of AI for Science (AI4S) is predominantly anchored in large-scale textual corpora, where generative AI systems excel at hypothesis generation, literature search, and multi-modal reasoning. However, a critical bottleneck for accelerating closed-loop scientific discovery remains the utilization of raw experimental data. Characterized by extreme heterogeneity, high specificity, and deep domain expertise requirements, raw data possess neither direct semantic alignment with linguistic representations nor structural homogeneity suitable for a unified embedding space. The disconnect prevents the emerging class of Artificial General Intelligence for Science (AGI4S) from effectively interfacing with the physical reality of experimentation. In this work, we extend the text-centric AI-Ready concept to Scientific AI-Ready data paradigm, explicitly formalizing how scientific data is specified, structured, and composed within a computational workflow. To operationalize this idea, we propose SciDataCopilot, an autonomous agentic framework designed to handle data ingestion, scientific intent parsing, and multi-modal integration in a end-to-end manner. By positioning data readiness as a core operational primitive, the framework provides a principled foundation for reusable, transferable systems, enabling the transition toward experiment-driven scientific general intelligence. Extensive evaluations across three heterogeneous scientific domains show that SciDataCopilot improves efficiency, scalability, and consistency over manual pipelines, with up to 30$\times$ speedup in data preparation.

cs.DB

Mitigating Label Noise using Prompt-Based Hyperbolic Meta-Learning in Open-Set Domain Generalization

Open-Set Domain Generalization (OSDG) is a challenging task requiring models to accurately predict familiar categories while minimizing confidence for unknown categories to effectively reject them in unseen domains. While the OSDG field has seen considerable advancements, the impact of label noise--a common issue in real-world datasets--has been largely overlooked. Label noise can mislead model optimization, thereby exacerbating the challenges of open-set recognition in novel domains. In this study, we take the first step towards addressing Open-Set Domain Generalization under Noisy Labels (OSDG-NL) by constructing dedicated benchmarks derived from widely used OSDG datasets, including PACS and DigitsDG. We evaluate baseline approaches by integrating techniques from both label denoising and OSDG methodologies, highlighting the limitations of existing strategies in handling label noise effectively. To address these limitations, we propose HyProMeta, a novel framework that integrates hyperbolic category prototypes for label noise-aware meta-learning alongside a learnable new-category agnostic prompt designed to enhance generalization to unseen classes. Our extensive experiments demonstrate the superior performance of HyProMeta compared to state-of-the-art methods across the newly established benchmarks. The source code of this work is released at https://github.com/KPeng9510/HyProMeta.

cs.CV