arXiv subjects

Jianbo Jiao

Publications and source records attributed to Jianbo Jiao.

At least 55 records · Page 3Linked to original sources

arXiv2023

FreMIM: Fourier Transform Meets Masked Image Modeling for Medical Image Segmentation

The research community has witnessed the powerful potential of self-supervised Masked Image Modeling (MIM), which enables the models capable of learning visual representation from unlabeled data. In this paper, to incorporate both the crucial global structural information and local details for dense prediction tasks, we alter the perspective to the frequency domain and present a new MIM-based framework named FreMIM for self-supervised pre-training to better accomplish medical image segmentation tasks. Based on the observations that the detailed structural information mainly lies in the high-frequency components and the high-level semantics are abundant in the low-frequency counterparts, we further incorporate multi-stage supervision to guide the representation learning during the pre-training phase. Extensive experiments on three benchmark datasets show the superior advantage of our FreMIM over previous state-of-the-art MIM methods. Compared with various baselines trained from scratch, our FreMIM could consistently bring considerable improvements to model performance. The code will be publicly available at https://github.com/Rubics-Xuan/FreMIM.

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arXiv2023

Show from Tell: Audio-Visual Modelling in Clinical Settings

Auditory and visual signals usually present together and correlate with each other, not only in natural environments but also in clinical settings. However, the audio-visual modelling in the latter case can be more challenging, due to the different sources of audio/video signals and the noise (both signal-level and semantic-level) in auditory signals -- usually speech. In this paper, we consider audio-visual modelling in a clinical setting, providing a solution to learn medical representations that benefit various clinical tasks, without human expert annotation. A simple yet effective multi-modal self-supervised learning framework is proposed for this purpose. The proposed approach is able to localise anatomical regions of interest during ultrasound imaging, with only speech audio as a reference. Experimental evaluations on a large-scale clinical multi-modal ultrasound video dataset show that the proposed self-supervised method learns good transferable anatomical representations that boost the performance of automated downstream clinical tasks, even outperforming fully-supervised solutions.

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arXiv2023

CoinSeg: Contrast Inter- and Intra- Class Representations for Incremental Segmentation

Class incremental semantic segmentation aims to strike a balance between the model's stability and plasticity by maintaining old knowledge while adapting to new concepts. However, most state-of-the-art methods use the freeze strategy for stability, which compromises the model's plasticity.In contrast, releasing parameter training for plasticity could lead to the best performance for all categories, but this requires discriminative feature representation.Therefore, we prioritize the model's plasticity and propose the Contrast inter- and intra-class representations for Incremental Segmentation (CoinSeg), which pursues discriminative representations for flexible parameter tuning. Inspired by the Gaussian mixture model that samples from a mixture of Gaussian distributions, CoinSeg emphasizes intra-class diversity with multiple contrastive representation centroids. Specifically, we use mask proposals to identify regions with strong objectness that are likely to be diverse instances/centroids of a category. These mask proposals are then used for contrastive representations to reinforce intra-class diversity. Meanwhile, to avoid bias from intra-class diversity, we also apply category-level pseudo-labels to enhance category-level consistency and inter-category diversity. Additionally, CoinSeg ensures the model's stability and alleviates forgetting through a specific flexible tuning strategy. We validate CoinSeg on Pascal VOC 2012 and ADE20K datasets with multiple incremental scenarios and achieve superior results compared to previous state-of-the-art methods, especially in more challenging and realistic long-term scenarios. Code is available at https://github.com/zkzhang98/CoinSeg.

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arXiv2023

Speed Co-Augmentation for Unsupervised Audio-Visual Pre-training

This work aims to improve unsupervised audio-visual pre-training. Inspired by the efficacy of data augmentation in visual contrastive learning, we propose a novel speed co-augmentation method that randomly changes the playback speeds of both audio and video data. Despite its simplicity, the speed co-augmentation method possesses two compelling attributes: (1) it increases the diversity of audio-visual pairs and doubles the size of negative pairs, resulting in a significant enhancement in the learned representations, and (2) it changes the strict correlation between audio-visual pairs but introduces a partial relationship between the augmented pairs, which is modeled by our proposed SoftInfoNCE loss to further boost the performance. Experimental results show that the proposed method significantly improves the learned representations when compared to vanilla audio-visual contrastive learning.

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arXiv2023

Multi-view Self-supervised Disentanglement for General Image Denoising

With its significant performance improvements, the deep learning paradigm has become a standard tool for modern image denoisers. While promising performance has been shown on seen noise distributions, existing approaches often suffer from generalisation to unseen noise types or general and real noise. It is understandable as the model is designed to learn paired mapping (e.g. from a noisy image to its clean version). In this paper, we instead propose to learn to disentangle the noisy image, under the intuitive assumption that different corrupted versions of the same clean image share a common latent space. A self-supervised learning framework is proposed to achieve the goal, without looking at the latent clean image. By taking two different corrupted versions of the same image as input, the proposed Multi-view Self-supervised Disentanglement (MeD) approach learns to disentangle the latent clean features from the corruptions and recover the clean image consequently. Extensive experimental analysis on both synthetic and real noise shows the superiority of the proposed method over prior self-supervised approaches, especially on unseen novel noise types. On real noise, the proposed method even outperforms its supervised counterparts by over 3 dB.

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arXiv2023

Revisiting Implicit Neural Representations in Low-Level Vision

Implicit Neural Representation (INR) has been emerging in computer vision in recent years. It has been shown to be effective in parameterising continuous signals such as dense 3D models from discrete image data, e.g. the neural radius field (NeRF). However, INR is under-explored in 2D image processing tasks. Considering the basic definition and the structure of INR, we are interested in its effectiveness in low-level vision problems such as image restoration. In this work, we revisit INR and investigate its application in low-level image restoration tasks including image denoising, super-resolution, inpainting, and deblurring. Extensive experimental evaluations suggest the superior performance of INR in several low-level vision tasks with limited resources, outperforming its counterparts by over 2dB. Code and models are available at https://github.com/WenTXuL/LINR

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arXiv2023

Mining Unseen Classes via Regional Objectness: A Simple Baseline for Incremental Segmentation

Incremental or continual learning has been extensively studied for image classification tasks to alleviate catastrophic forgetting, a phenomenon that earlier learned knowledge is forgotten when learning new concepts. For class incremental semantic segmentation, such a phenomenon often becomes much worse due to the background shift, i.e., some concepts learned at previous stages are assigned to the background class at the current training stage, therefore, significantly reducing the performance of these old concepts. To address this issue, we propose a simple yet effective method in this paper, named Mining unseen Classes via Regional Objectness for Segmentation (MicroSeg). Our MicroSeg is based on the assumption that background regions with strong objectness possibly belong to those concepts in the historical or future stages. Therefore, to avoid forgetting old knowledge at the current training stage, our MicroSeg first splits the given image into hundreds of segment proposals with a proposal generator. Those segment proposals with strong objectness from the background are then clustered and assigned newly-defined labels during the optimization. In this way, the distribution characterizes of old concepts in the feature space could be better perceived, relieving the catastrophic forgetting caused by the background shift accordingly. Extensive experiments on Pascal VOC and ADE20K datasets show competitive results with state-of-the-art, well validating the effectiveness of the proposed MicroSeg.

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arXiv2022

Anatomy-Aware Contrastive Representation Learning for Fetal Ultrasound

Self-supervised contrastive representation learning offers the advantage of learning meaningful visual representations from unlabeled medical datasets for transfer learning. However, applying current contrastive learning approaches to medical data without considering its domain-specific anatomical characteristics may lead to visual representations that are inconsistent in appearance and semantics. In this paper, we propose to improve visual representations of medical images via anatomy-aware contrastive learning (AWCL), which incorporates anatomy information to augment the positive/negative pair sampling in a contrastive learning manner. The proposed approach is demonstrated for automated fetal ultrasound imaging tasks, enabling the positive pairs from the same or different ultrasound scans that are anatomically similar to be pulled together and thus improving the representation learning. We empirically investigate the effect of inclusion of anatomy information with coarse- and fine-grained granularity, for contrastive learning and find that learning with fine-grained anatomy information which preserves intra-class difference is more effective than its counterpart. We also analyze the impact of anatomy ratio on our AWCL framework and find that using more distinct but anatomically similar samples to compose positive pairs results in better quality representations. Experiments on a large-scale fetal ultrasound dataset demonstrate that our approach is effective for learning representations that transfer well to three clinical downstream tasks, and achieves superior performance compared to ImageNet supervised and the current state-of-the-art contrastive learning methods. In particular, AWCL outperforms ImageNet supervised method by 13.8% and state-of-the-art contrastive-based method by 7.1% on a cross-domain segmentation task.

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arXiv2021

Quantised Transforming Auto-Encoders: Achieving Equivariance to Arbitrary Transformations in Deep Networks

In this work we investigate how to achieve equivariance to input transformations in deep networks, purely from data, without being given a model of those transformations. Convolutional Neural Networks (CNNs), for example, are equivariant to image translation, a transformation that can be easily modelled (by shifting the pixels vertically or horizontally). Other transformations, such as out-of-plane rotations, do not admit a simple analytic model. We propose an auto-encoder architecture whose embedding obeys an arbitrary set of equivariance relations simultaneously, such as translation, rotation, colour changes, and many others. This means that it can take an input image, and produce versions transformed by a given amount that were not observed before (e.g. a different point of view of the same object, or a colour variation). Despite extending to many (even non-geometric) transformations, our model reduces exactly to a CNN in the special case of translation-equivariance. Equivariances are important for the interpretability and robustness of deep networks, and we demonstrate results of successful re-rendering of transformed versions of input images on several synthetic and real datasets, as well as results on object pose estimation.

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arXiv2021

Revitalizing CNN Attentions via Transformers in Self-Supervised Visual Representation Learning

Studies on self-supervised visual representation learning (SSL) improve encoder backbones to discriminate training samples without labels. While CNN encoders via SSL achieve comparable recognition performance to those via supervised learning, their network attention is under-explored for further improvement. Motivated by the transformers that explore visual attention effectively in recognition scenarios, we propose a CNN Attention REvitalization (CARE) framework to train attentive CNN encoders guided by transformers in SSL. The proposed CARE framework consists of a CNN stream (C-stream) and a transformer stream (T-stream), where each stream contains two branches. C-stream follows an existing SSL framework with two CNN encoders, two projectors, and a predictor. T-stream contains two transformers, two projectors, and a predictor. T-stream connects to CNN encoders and is in parallel to the remaining C-Stream. During training, we perform SSL in both streams simultaneously and use the T-stream output to supervise C-stream. The features from CNN encoders are modulated in T-stream for visual attention enhancement and become suitable for the SSL scenario. We use these modulated features to supervise C-stream for learning attentive CNN encoders. To this end, we revitalize CNN attention by using transformers as guidance. Experiments on several standard visual recognition benchmarks, including image classification, object detection, and semantic segmentation, show that the proposed CARE framework improves CNN encoder backbones to the state-of-the-art performance.

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arXiv2021

Facial Anatomical Landmark Detection using Regularized Transfer Learning with Application to Fetal Alcohol Syndrome Recognition

Fetal alcohol syndrome (FAS) caused by prenatal alcohol exposure can result in a series of cranio-facial anomalies, and behavioral and neurocognitive problems. Current diagnosis of FAS is typically done by identifying a set of facial characteristics, which are often obtained by manual examination. Anatomical landmark detection, which provides rich geometric information, is important to detect the presence of FAS associated facial anomalies. This imaging application is characterized by large variations in data appearance and limited availability of labeled data. Current deep learning-based heatmap regression methods designed for facial landmark detection in natural images assume availability of large datasets and are therefore not wellsuited for this application. To address this restriction, we develop a new regularized transfer learning approach that exploits the knowledge of a network learned on large facial recognition datasets. In contrast to standard transfer learning which focuses on adjusting the pre-trained weights, the proposed learning approach regularizes the model behavior. It explicitly reuses the rich visual semantics of a domain-similar source model on the target task data as an additional supervisory signal for regularizing landmark detection optimization. Specifically, we develop four regularization constraints for the proposed transfer learning, including constraining the feature outputs from classification and intermediate layers, as well as matching activation attention maps in both spatial and channel levels. Experimental evaluation on a collected clinical imaging dataset demonstrate that the proposed approach can effectively improve model generalizability under limited training samples, and is advantageous to other approaches in the literature.

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arXiv2021

Affinity Attention Graph Neural Network for Weakly Supervised Semantic Segmentation

Weakly supervised semantic segmentation is receiving great attention due to its low human annotation cost. In this paper, we aim to tackle bounding box supervised semantic segmentation, i.e., training accurate semantic segmentation models using bounding box annotations as supervision. To this end, we propose Affinity Attention Graph Neural Network ($A^2$GNN). Following previous practices, we first generate pseudo semantic-aware seeds, which are then formed into semantic graphs based on our newly proposed affinity Convolutional Neural Network (CNN). Then the built graphs are input to our $A^2$GNN, in which an affinity attention layer is designed to acquire the short- and long- distance information from soft graph edges to accurately propagate semantic labels from the confident seeds to the unlabeled pixels. However, to guarantee the precision of the seeds, we only adopt a limited number of confident pixel seed labels for $A^2$GNN, which may lead to insufficient supervision for training. To alleviate this issue, we further introduce a new loss function and a consistency-checking mechanism to leverage the bounding box constraint, so that more reliable guidance can be included for the model optimization. Experiments show that our approach achieves new state-of-the-art performances on Pascal VOC 2012 datasets (val: 76.5\%, test: 75.2\%). More importantly, our approach can be readily applied to bounding box supervised instance segmentation task or other weakly supervised semantic segmentation tasks, with state-of-the-art or comparable performance among almot all weakly supervised tasks on PASCAL VOC or COCO dataset. Our source code will be available at https://github.com/zbf1991/A2GNN.

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arXiv2021

Self-supervised Video Representation Learning by Uncovering Spatio-temporal Statistics

This paper proposes a novel pretext task to address the self-supervised video representation learning problem. Specifically, given an unlabeled video clip, we compute a series of spatio-temporal statistical summaries, such as the spatial location and dominant direction of the largest motion, the spatial location and dominant color of the largest color diversity along the temporal axis, etc. Then a neural network is built and trained to yield the statistical summaries given the video frames as inputs. In order to alleviate the learning difficulty, we employ several spatial partitioning patterns to encode rough spatial locations instead of exact spatial Cartesian coordinates. Our approach is inspired by the observation that human visual system is sensitive to rapidly changing contents in the visual field, and only needs impressions about rough spatial locations to understand the visual contents. To validate the effectiveness of the proposed approach, we conduct extensive experiments with four 3D backbone networks, i.e., C3D, 3D-ResNet, R(2+1)D and S3D-G. The results show that our approach outperforms the existing approaches across these backbone networks on four downstream video analysis tasks including action recognition, video retrieval, dynamic scene recognition, and action similarity labeling. The source code is publicly available at: https://github.com/laura-wang/video_repres_sts.

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arXiv2020

Unified Image and Video Saliency Modeling

Visual saliency modeling for images and videos is treated as two independent tasks in recent computer vision literature. While image saliency modeling is a well-studied problem and progress on benchmarks like SALICON and MIT300 is slowing, video saliency models have shown rapid gains on the recent DHF1K benchmark. Here, we take a step back and ask: Can image and video saliency modeling be approached via a unified model, with mutual benefit? We identify different sources of domain shift between image and video saliency data and between different video saliency datasets as a key challenge for effective joint modelling. To address this we propose four novel domain adaptation techniques - Domain-Adaptive Priors, Domain-Adaptive Fusion, Domain-Adaptive Smoothing and Bypass-RNN - in addition to an improved formulation of learned Gaussian priors. We integrate these techniques into a simple and lightweight encoder-RNN-decoder-style network, UNISAL, and train it jointly with image and video saliency data. We evaluate our method on the video saliency datasets DHF1K, Hollywood-2 and UCF-Sports, and the image saliency datasets SALICON and MIT300. With one set of parameters, UNISAL achieves state-of-the-art performance on all video saliency datasets and is on par with the state-of-the-art for image saliency datasets, despite faster runtime and a 5 to 20-fold smaller model size compared to all competing deep methods. We provide retrospective analyses and ablation studies which confirm the importance of the domain shift modeling. The code is available at https://github.com/rdroste/unisal

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arXiv2020

Cross-Task Representation Learning for Anatomical Landmark Detection

Recently, there is an increasing demand for automatically detecting anatomical landmarks which provide rich structural information to facilitate subsequent medical image analysis. Current methods related to this task often leverage the power of deep neural networks, while a major challenge in fine tuning such models in medical applications arises from insufficient number of labeled samples. To address this, we propose to regularize the knowledge transfer across source and target tasks through cross-task representation learning. The proposed method is demonstrated for extracting facial anatomical landmarks which facilitate the diagnosis of fetal alcohol syndrome. The source and target tasks in this work are face recognition and landmark detection, respectively. The main idea of the proposed method is to retain the feature representations of the source model on the target task data, and to leverage them as an additional source of supervisory signals for regularizing the target model learning, thereby improving its performance under limited training samples. Concretely, we present two approaches for the proposed representation learning by constraining either final or intermediate model features on the target model. Experimental results on a clinical face image dataset demonstrate that the proposed approach works well with few labeled data, and outperforms other compared approaches.

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arXiv2020

Self-supervised Video Representation Learning by Pace Prediction

This paper addresses the problem of self-supervised video representation learning from a new perspective -- by video pace prediction. It stems from the observation that human visual system is sensitive to video pace, e.g., slow motion, a widely used technique in film making. Specifically, given a video played in natural pace, we randomly sample training clips in different paces and ask a neural network to identify the pace for each video clip. The assumption here is that the network can only succeed in such a pace reasoning task when it understands the underlying video content and learns representative spatio-temporal features. In addition, we further introduce contrastive learning to push the model towards discriminating different paces by maximizing the agreement on similar video content. To validate the effectiveness of the proposed method, we conduct extensive experiments on action recognition and video retrieval tasks with several alternative network architectures. Experimental evaluations show that our approach achieves state-of-the-art performance for self-supervised video representation learning across different network architectures and different benchmarks. The code and pre-trained models are available at https://github.com/laura-wang/video-pace.

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arXiv2020

Self-Supervised Ultrasound to MRI Fetal Brain Image Synthesis

Fetal brain magnetic resonance imaging (MRI) offers exquisite images of the developing brain but is not suitable for second-trimester anomaly screening, for which ultrasound (US) is employed. Although expert sonographers are adept at reading US images, MR images which closely resemble anatomical images are much easier for non-experts to interpret. Thus in this paper we propose to generate MR-like images directly from clinical US images. In medical image analysis such a capability is potentially useful as well, for instance for automatic US-MRI registration and fusion. The proposed model is end-to-end trainable and self-supervised without any external annotations. Specifically, based on an assumption that the US and MRI data share a similar anatomical latent space, we first utilise a network to extract the shared latent features, which are then used for MRI synthesis. Since paired data is unavailable for our study (and rare in practice), pixel-level constraints are infeasible to apply. We instead propose to enforce the distributions to be statistically indistinguishable, by adversarial learning in both the image domain and feature space. To regularise the anatomical structures between US and MRI during synthesis, we further propose an adversarial structural constraint. A new cross-modal attention technique is proposed to utilise non-local spatial information, by encouraging multi-modal knowledge fusion and propagation. We extend the approach to consider the case where 3D auxiliary information (e.g., 3D neighbours and a 3D location index) from volumetric data is also available, and show that this improves image synthesis. The proposed approach is evaluated quantitatively and qualitatively with comparison to real fetal MR images and other approaches to synthesis, demonstrating its feasibility of synthesising realistic MR images.

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arXiv2020

Self-supervised Contrastive Video-Speech Representation Learning for Ultrasound

In medical imaging, manual annotations can be expensive to acquire and sometimes infeasible to access, making conventional deep learning-based models difficult to scale. As a result, it would be beneficial if useful representations could be derived from raw data without the need for manual annotations. In this paper, we propose to address the problem of self-supervised representation learning with multi-modal ultrasound video-speech raw data. For this case, we assume that there is a high correlation between the ultrasound video and the corresponding narrative speech audio of the sonographer. In order to learn meaningful representations, the model needs to identify such correlation and at the same time understand the underlying anatomical features. We designed a framework to model the correspondence between video and audio without any kind of human annotations. Within this framework, we introduce cross-modal contrastive learning and an affinity-aware self-paced learning scheme to enhance correlation modelling. Experimental evaluations on multi-modal fetal ultrasound video and audio show that the proposed approach is able to learn strong representations and transfers well to downstream tasks of standard plane detection and eye-gaze prediction.

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