arXiv subjects

Jianfeng Bao

Publications and source records attributed to Jianfeng Bao.

4 recordsLinked to original sources

arXiv2025

Bridging Synthetic-to-Real Gaps: Frequency-Aware Perturbation and Selection for Single-shot Multi-Parametric Mapping Reconstruction

Data-centric artificial intelligence (AI) has remarkably advanced medical imaging, with emerging methods using synthetic data to address data scarcity while introducing synthetic-to-real gaps. Unsupervised domain adaptation (UDA) shows promise in ground truth-scarce tasks, but its application in reconstruction remains underexplored. Although multiple overlapping-echo detachment (MOLED) achieves ultra-fast multi-parametric reconstruction, extending its application to various clinical scenarios, the quality suffers from deficiency in mitigating the domain gap, difficulty in maintaining structural integrity, and inadequacy in ensuring mapping accuracy. To resolve these issues, we proposed frequency-aware perturbation and selection (FPS), comprising Wasserstein distance-modulated frequency-aware perturbation (WDFP) and hierarchical frequency-aware selection network (HFSNet), which integrates frequency-aware adaptive selection (FAS), compact FAS (cFAS) and feature-aware architecture integration (FAI). Specifically, perturbation activates domain-invariant feature learning within uncertainty, while selection refines optimal solutions within perturbation, establishing a robust and closed-loop learning pathway. Extensive experiments on synthetic data, along with diverse real clinical cases from 5 healthy volunteers, 94 ischemic stroke patients, and 46 meningioma patients, demonstrate the superiority and clinical applicability of FPS. Furthermore, FPS is applied to diffusion tensor imaging (DTI), underscoring its versatility and potential for broader medical applications. The code is available at https://github.com/flyannie/FPS.

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arXiv2025

MvKeTR: Chest CT Report Generation with Multi-View Perception and Knowledge Enhancement

CT report generation (CTRG) aims to automatically generate diagnostic reports for 3D volumes, relieving clinicians' workload and improving patient care. Despite clinical value, existing works fail to effectively incorporate diagnostic information from multiple anatomical views and lack related clinical expertise essential for accurate and reliable diagnosis. To resolve these limitations, we propose a novel Multi-view perception Knowledge-enhanced TansfoRmer (MvKeTR) to mimic the diagnostic workflow of clinicians. Just as radiologists first examine CT scans from multiple planes, a Multi-View Perception Aggregator (MVPA) with view-aware attention is proposed to synthesize diagnostic information from multiple anatomical views effectively. Then, inspired by how radiologists further refer to relevant clinical records to guide diagnostic decision-making, a Cross-Modal Knowledge Enhancer (CMKE) is devised to retrieve the most similar reports based on the query volume to incorporate domain knowledge into the diagnosis procedure. Furthermore, instead of traditional MLPs, we employ Kolmogorov-Arnold Networks (KANs) as the fundamental building blocks of both modules, which exhibit superior parameter efficiency and reduced spectral bias to better capture high-frequency components critical for CT interpretation while mitigating overfitting. Extensive experiments on the public CTRG-Chest-548 K dataset demonstrate that our method outpaces prior state-of-the-art (SOTA) models across almost all metrics. The code is available at https://github.com/xiweideng/MvKeTR.

cs.CV↗

arXiv2023

FlexDTI: Flexible diffusion gradient encoding scheme-based highly efficient diffusion tensor imaging using deep learning

Objective: Most deep neural network-based diffusion tensor imaging methods require the diffusion gradients' number and directions in the data to be reconstructed to match those in the training data. This work aims to develop and evaluate a novel dynamic-convolution-based method called FlexDTI for highly efficient diffusion tensor reconstruction with flexible diffusion encoding gradient scheme. Approach: FlexDTI was developed to achieve high-quality DTI parametric mapping with flexible number and directions of diffusion encoding gradients. The method used dynamic convolution kernels to embed diffusion gradient direction information into feature maps of the corresponding diffusion signal. Furthermore, it realized the generalization of a flexible number of diffusion gradient directions by setting the maximum number of input channels of the network. The network was trained and tested using datasets from the Human Connectome Project and local hospitals. Results from FlexDTI and other advanced tensor parameter estimation methods were compared. Main results: Compared to other methods, FlexDTI successfully achieves high-quality diffusion tensor-derived parameters even if the number and directions of diffusion encoding gradients change. It reduces normalized root mean squared error (NRMSE) by about 50% on fractional anisotropy (FA) and 15% on mean diffusivity (MD), compared with the state-of-the-art deep learning method with flexible diffusion encoding gradient scheme. Significance: FlexDTI can well learn diffusion gradient direction information to achieve generalized DTI reconstruction with flexible diffusion gradient scheme. Both flexibility and reconstruction quality can be taken into account in this network.

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arXiv2022

Model-based Synthetic Data-driven Learning (MOST-DL): Application in Single-shot T2 Mapping with Severe Head Motion Using Overlapping-echo Acquisition

Use of synthetic data has provided a potential solution for addressing unavailable or insufficient training samples in deep learning-based magnetic resonance imaging (MRI). However, the challenge brought by domain gap between synthetic and real data is usually encountered, especially under complex experimental conditions. In this study, by combining Bloch simulation and general MRI models, we propose a framework for addressing the lack of training data in supervised learning scenarios, termed MOST-DL. A challenging application is demonstrated to verify the proposed framework and achieve motion-robust T2 mapping using single-shot overlapping-echo acquisition. We decompose the process into two main steps: (1) calibrationless parallel reconstruction for ultra-fast pulse sequence and (2) intra-shot motion correction for T2 mapping. To bridge the domain gap, realistic textures from a public database and various imperfection simulations were explored. The neural network was first trained with pure synthetic data and then evaluated with in vivo human brain. Both simulation and in vivo experiments show that the MOST-DL method significantly reduces ghosting and motion artifacts in T2 maps in the presence of unpredictable subject movement and has the potential to be applied to motion-prone patients in the clinic.

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