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Jiang Liu

Publications and source records attributed to Jiang Liu.

At least 145 records · Page 8Linked to original sources

Label-noise-tolerant medical image classification via self-attention and self-supervised learning

Deep neural networks (DNNs) have been widely applied in medical image classification and achieve remarkable classification performance. These achievements heavily depend on large-scale accurately annotated training data. However, label noise is inevitably introduced in the medical image annotation, as the labeling process heavily relies on the expertise and experience of annotators. Meanwhile, DNNs suffer from overfitting noisy labels, degrading the performance of models. Therefore, in this work, we innovatively devise noise-robust training approach to mitigate the adverse effects of noisy labels in medical image classification. Specifically, we incorporate contrastive learning and intra-group attention mixup strategies into the vanilla supervised learning. The contrastive learning for feature extractor helps to enhance visual representation of DNNs. The intra-group attention mixup module constructs groups and assigns self-attention weights for group-wise samples, and subsequently interpolates massive noisy-suppressed samples through weighted mixup operation. We conduct comparative experiments on both synthetic and real-world noisy medical datasets under various noise levels. Rigorous experiments validate that our noise-robust method with contrastive learning and attention mixup can effectively handle with label noise, and is superior to state-of-the-art methods. An ablation study also shows that both components contribute to boost model performance. The proposed method demonstrates its capability of curb label noise and has certain potential toward real-world clinic applications.

cs.CV↗

TKDP: Threefold Knowledge-enriched Deep Prompt Tuning for Few-shot Named Entity Recognition

Few-shot named entity recognition (NER) exploits limited annotated instances to identify named mentions. Effectively transferring the internal or external resources thus becomes the key to few-shot NER. While the existing prompt tuning methods have shown remarkable few-shot performances, they still fail to make full use of knowledge. In this work, we investigate the integration of rich knowledge to prompt tuning for stronger few-shot NER. We propose incorporating the deep prompt tuning framework with threefold knowledge (namely TKDP), including the internal 1) context knowledge and the external 2) label knowledge & 3) sememe knowledge. TKDP encodes the three feature sources and incorporates them into the soft prompt embeddings, which are further injected into an existing pre-trained language model to facilitate predictions. On five benchmark datasets, our knowledge-enriched model boosts by at most 11.53% F1 over the raw deep prompt method, and significantly outperforms 8 strong-performing baseline systems in 5-/10-/20-shot settings, showing great potential in few-shot NER. Our TKDP can be broadly adapted to other few-shot tasks without effort.

cs.CL↗

ORGAN: Observation-Guided Radiology Report Generation via Tree Reasoning

This paper explores the task of radiology report generation, which aims at generating free-text descriptions for a set of radiographs. One significant challenge of this task is how to correctly maintain the consistency between the images and the lengthy report. Previous research explored solving this issue through planning-based methods, which generate reports only based on high-level plans. However, these plans usually only contain the major observations from the radiographs (e.g., lung opacity), lacking much necessary information, such as the observation characteristics and preliminary clinical diagnoses. To address this problem, the system should also take the image information into account together with the textual plan and perform stronger reasoning during the generation process. In this paper, we propose an observation-guided radiology report generation framework (ORGAN). It first produces an observation plan and then feeds both the plan and radiographs for report generation, where an observation graph and a tree reasoning mechanism are adopted to precisely enrich the plan information by capturing the multi-formats of each observation. Experimental results demonstrate that our framework outperforms previous state-of-the-art methods regarding text quality and clinical efficacy

cs.CL↗

Elongated Physiological Structure Segmentation via Spatial and Scale Uncertainty-aware Network

Robust and accurate segmentation for elongated physiological structures is challenging, especially in the ambiguous region, such as the corneal endothelium microscope image with uneven illumination or the fundus image with disease interference. In this paper, we present a spatial and scale uncertainty-aware network (SSU-Net) that fully uses both spatial and scale uncertainty to highlight ambiguous regions and integrate hierarchical structure contexts. First, we estimate epistemic and aleatoric spatial uncertainty maps using Monte Carlo dropout to approximate Bayesian networks. Based on these spatial uncertainty maps, we propose the gated soft uncertainty-aware (GSUA) module to guide the model to focus on ambiguous regions. Second, we extract the uncertainty under different scales and propose the multi-scale uncertainty-aware (MSUA) fusion module to integrate structure contexts from hierarchical predictions, strengthening the final prediction. Finally, we visualize the uncertainty map of final prediction, providing interpretability for segmentation results. Experiment results show that the SSU-Net performs best on cornea endothelial cell and retinal vessel segmentation tasks. Moreover, compared with counterpart uncertainty-based methods, SSU-Net is more accurate and robust.

eess.IV↗

Mask Attack Detection Using Vascular-weighted Motion-robust rPPG Signals

Detecting 3D mask attacks to a face recognition system is challenging. Although genuine faces and 3D face masks show significantly different remote photoplethysmography (rPPG) signals, rPPG-based face anti-spoofing methods often suffer from performance degradation due to unstable face alignment in the video sequence and weak rPPG signals. To enhance the rPPG signal in a motion-robust way, a landmark-anchored face stitching method is proposed to align the faces robustly and precisely at the pixel-wise level by using both SIFT keypoints and facial landmarks. To better encode the rPPG signal, a weighted spatial-temporal representation is proposed, which emphasizes the face regions with rich blood vessels. In addition, characteristics of rPPG signals in different color spaces are jointly utilized. To improve the generalization capability, a lightweight EfficientNet with a Gated Recurrent Unit (GRU) is designed to extract both spatial and temporal features from the rPPG spatial-temporal representation for classification. The proposed method is compared with the state-of-the-art methods on five benchmark datasets under both intra-dataset and cross-dataset evaluations. The proposed method shows a significant and consistent improvement in performance over other state-of-the-art rPPG-based methods for face spoofing detection.

cs.CV↗

Statistical Characteristics of the Electron Isotropy Boundary

Utilizing observations from the ELFIN satellites, we present a statistical study of $\sim$2000 events in 2019-2020 characterizing the occurrence in magnetic local time (MLT) and latitude of $\geq$50 keV electron isotropy boundaries (IBs) at Earth, and the dependence of associated precipitation on geomagnetic activity. The isotropy boundary for an electron of a given energy is the magnetic latitude poleward of which persistent isotropized pitch-angle distributions ($J_{prec}/J_{perp}\sim 1$) are first observed to occur, interpreted as resulting from magnetic field-line curvature scattering (FLCS) in the equatorial magnetosphere. We find that energetic electron IBs can be well-recognized on the nightside from dusk until dawn, under all geomagnetic activity conditions, with a peak occurrence rate of almost 90% near $\sim$22 hours in MLT, remaining above 80% from 21 to 01 MLT. The IBs span a wide range of IGRF magnetic latitudes from $60^\circ$-$74^\circ$, with a maximum occurrence between $66^\circ$-$71^\circ$ (L of 6-8), shifting to lower latitudes and pre-midnight local times with activity. The precipitating energy flux of $\geq$50 keV electrons averaged over the IB-associated latitudes varies over four orders of magnitude, up to $\sim$1 erg/cm$^2$-s, and often includes electron energies exceeding 1 MeV. The local time distribution of IB-associated energies and precipitating fluxes also exhibit peak values near midnight for low activity, shifting toward pre-midnight for elevated activity. The percentage of the total energy deposited over the high-latitude regions ($55^\circ$ to $80^\circ$; or IGRF $L\gtrsim 3$) attributed to IBs is 10-20%, on average, or about 10 MW of total atmospheric power input, but at times can be up to $\sim$100% of the total $\geq$50 keV electron energy deposition over the entire sub-auroral and auroral zone region, exceeding 1 GW in atmospheric power input.

physics.space-ph↗

Attribute-Guided Encryption with Facial Texture Masking

The increasingly pervasive facial recognition (FR) systems raise serious concerns about personal privacy, especially for billions of users who have publicly shared their photos on social media. Several attempts have been made to protect individuals from unauthorized FR systems utilizing adversarial attacks to generate encrypted face images to protect users from being identified by FR systems. However, existing methods suffer from poor visual quality or low attack success rates, which limit their usability in practice. In this paper, we propose Attribute Guided Encryption with Facial Texture Masking (AGE-FTM) that performs a dual manifold adversarial attack on FR systems to achieve both good visual quality and high black box attack success rates. In particular, AGE-FTM utilizes a high fidelity generative adversarial network (GAN) to generate natural on-manifold adversarial samples by modifying facial attributes, and performs the facial texture masking attack to generate imperceptible off-manifold adversarial samples. Extensive experiments on the CelebA-HQ dataset demonstrate that our proposed method produces more natural-looking encrypted images than state-of-the-art methods while achieving competitive attack performance. We further evaluate the effectiveness of AGE-FTM in the real world using a commercial FR API and validate its usefulness in practice through an user study.

cs.CV↗

Learnable Ophthalmology SAM

Segmentation is vital for ophthalmology image analysis. But its various modal images hinder most of the existing segmentation algorithms applications, as they rely on training based on a large number of labels or hold weak generalization ability. Based on Segment Anything (SAM), we propose a simple but effective learnable prompt layer suitable for multiple target segmentation in ophthalmology multi-modal images, named Learnable Ophthalmology Segment Anything (SAM). The learnable prompt layer learns medical prior knowledge from each transformer layer. During training, we only train the prompt layer and task head based on a one-shot mechanism. We demonstrate the effectiveness of our thought based on four medical segmentation tasks based on nine publicly available datasets. Moreover, we only provide a new improvement thought for applying the existing fundamental CV models in the medical field. Our codes are available at \href{https://github.com/Qsingle/LearnablePromptSAM}{website}.

cs.CV↗

Eye tracking guided deep multiple instance learning with dual cross-attention for fundus disease detection

Deep neural networks (DNNs) have promoted the development of computer aided diagnosis (CAD) systems for fundus diseases, helping ophthalmologists reduce missed diagnosis and misdiagnosis rate. However, the majority of CAD systems are data-driven but lack of medical prior knowledge which can be performance-friendly. In this regard, we innovatively proposed a human-in-the-loop (HITL) CAD system by leveraging ophthalmologists' eye-tracking information, which is more efficient and accurate. Concretely, the HITL CAD system was implemented on the multiple instance learning (MIL), where eye-tracking gaze maps were beneficial to cherry-pick diagnosis-related instances. Furthermore, the dual-cross-attention MIL (DCAMIL) network was utilized to curb the adverse effects of noisy instances. Meanwhile, both sequence augmentation module and domain adversarial module were introduced to enrich and standardize instances in the training bag, respectively, thereby enhancing the robustness of our method. We conduct comparative experiments on our newly constructed datasets (namely, AMD-Gaze and DR-Gaze), respectively for the AMD and early DR detection. Rigorous experiments demonstrate the feasibility of our HITL CAD system and the superiority of the proposed DCAMIL, fully exploring the ophthalmologists' eye-tracking information. These investigations indicate that physicians' gaze maps, as medical prior knowledge, is potential to contribute to the CAD systems of clinical diseases.

eess.IV↗

One Model to Synthesize Them All: Multi-contrast Multi-scale Transformer for Missing Data Imputation

Multi-contrast magnetic resonance imaging (MRI) is widely used in clinical practice as each contrast provides complementary information. However, the availability of each imaging contrast may vary amongst patients, which poses challenges to radiologists and automated image analysis algorithms. A general approach for tackling this problem is missing data imputation, which aims to synthesize the missing contrasts from existing ones. While several convolutional neural networks (CNN) based algorithms have been proposed, they suffer from the fundamental limitations of CNN models, such as the requirement for fixed numbers of input and output channels, the inability to capture long-range dependencies, and the lack of interpretability. In this work, we formulate missing data imputation as a sequence-to-sequence learning problem and propose a multi-contrast multi-scale Transformer (MMT), which can take any subset of input contrasts and synthesize those that are missing. MMT consists of a multi-scale Transformer encoder that builds hierarchical representations of inputs combined with a multi-scale Transformer decoder that generates the outputs in a coarse-to-fine fashion. The proposed multi-contrast Swin Transformer blocks can efficiently capture intra- and inter-contrast dependencies for accurate image synthesis. Moreover, MMT is inherently interpretable as it allows us to understand the importance of each input contrast in different regions by analyzing the in-built attention maps of Transformer blocks in the decoder. Extensive experiments on two large-scale multi-contrast MRI datasets demonstrate that MMT outperforms the state-of-the-art methods quantitatively and qualitatively.

eess.IV↗

PolyFormer: Referring Image Segmentation as Sequential Polygon Generation

In this work, instead of directly predicting the pixel-level segmentation masks, the problem of referring image segmentation is formulated as sequential polygon generation, and the predicted polygons can be later converted into segmentation masks. This is enabled by a new sequence-to-sequence framework, Polygon Transformer (PolyFormer), which takes a sequence of image patches and text query tokens as input, and outputs a sequence of polygon vertices autoregressively. For more accurate geometric localization, we propose a regression-based decoder, which predicts the precise floating-point coordinates directly, without any coordinate quantization error. In the experiments, PolyFormer outperforms the prior art by a clear margin, e.g., 5.40% and 4.52% absolute improvements on the challenging RefCOCO+ and RefCOCOg datasets. It also shows strong generalization ability when evaluated on the referring video segmentation task without fine-tuning, e.g., achieving competitive 61.5% J&F on the Ref-DAVIS17 dataset.

cs.CV↗

Hard Exudate Segmentation Supplemented by Super-Resolution with Multi-scale Attention Fusion Module

Hard exudates (HE) is the most specific biomarker for retina edema. Precise HE segmentation is vital for disease diagnosis and treatment, but automatic segmentation is challenged by its large variation of characteristics including size, shape and position, which makes it difficult to detect tiny lesions and lesion boundaries. Considering the complementary features between segmentation and super-resolution tasks, this paper proposes a novel hard exudates segmentation method named SS-MAF with an auxiliary super-resolution task, which brings in helpful detailed features for tiny lesion and boundaries detection. Specifically, we propose a fusion module named Multi-scale Attention Fusion (MAF) module for our dual-stream framework to effectively integrate features of the two tasks. MAF first adopts split spatial convolutional (SSC) layer for multi-scale features extraction and then utilize attention mechanism for features fusion of the two tasks. Considering pixel dependency, we introduce region mutual information (RMI) loss to optimize MAF module for tiny lesions and boundary detection. We evaluate our method on two public lesion datasets, IDRiD and E-Ophtha. Our method shows competitive performance with low-resolution inputs, both quantitatively and qualitatively. On E-Ophtha dataset, the method can achieve $\geq3\%$ higher dice and recall compared with the state-of-the-art methods.

eess.IV↗

TOE: A Grid-Tagging Discontinuous NER Model Enhanced by Embedding Tag/Word Relations and More Fine-Grained Tags

So far, discontinuous named entity recognition (NER) has received increasing research attention and many related methods have surged such as hypergraph-based methods, span-based methods, and sequence-to-sequence (Seq2Seq) methods, etc. However, these methods more or less suffer from some problems such as decoding ambiguity and efficiency, which limit their performance. Recently, grid-tagging methods, which benefit from the flexible design of tagging systems and model architectures, have shown superiority to adapt for various information extraction tasks. In this paper, we follow the line of such methods and propose a competitive grid-tagging model for discontinuous NER. We call our model TOE because we incorporate two kinds of Tag-Oriented Enhancement mechanisms into a state-of-the-art (SOTA) grid-tagging model that casts the NER problem into word-word relationship prediction. First, we design a Tag Representation Embedding Module (TREM) to force our model to consider not only word-word relationships but also word-tag and tag-tag relationships. Concretely, we construct tag representations and embed them into TREM, so that TREM can treat tag and word representations as queries/keys/values and utilize self-attention to model their relationships. On the other hand, motivated by the Next-Neighboring-Word (NNW) and Tail-Head-Word (THW) tags in the SOTA model, we add two new symmetric tags, namely Previous-Neighboring-Word (PNW) and Head-Tail-Word (HTW), to model more fine-grained word-word relationships and alleviate error propagation from tag prediction. In the experiments of three benchmark datasets, namely CADEC, ShARe13 and ShARe14, our TOE model pushes the SOTA results by about 0.83%, 0.05% and 0.66% in F1, demonstrating its effectiveness.

cs.CL↗

Revealing the interior structure of icy moons with a Bayesian approach to magnetic induction measurements

Some icy moons and small bodies in the solar system are believed to host subsurface liquid water oceans. The interaction of these saline, electrically conductive oceans with time-varying external magnetic fields generates induced magnetic fields. Magnetometry observations of these induced fields in turn enable the detection and characterization of these oceans. We present a framework for characterizing the interiors of icy moons using multi-frequency induction and Bayesian inference applied to magnetometry measurements anticipated from the upcoming Europa Clipper mission. Using simulated data from the Europa Clipper Magnetometer (ECM), our approach can accurately retrieve a wide range of plausible internal structures for Europa. In particular, the ocean conductivity is recovered to within ${\pm}50\%$ for all internal structure scenarios considered and the ocean thickness can be retrieved to within ${\pm}25~\mathrm{km}$ for five out of seven scenarios. Characterization of the ice shell thickness to ${\pm}50\%$ is possible for six of seven scenarios. Our recovery of the ice shell thickness is highly contingent on accurate modeling of magnetic fields arising from the interaction of Europa with the ambient magnetospheric plasma, while the ocean thickness is more modestly affected and the ocean conductivity retrieval is largely unchanged. Furthermore, we find that the addition of a priori constraints (e.g., static gravity measurements) can yield improved ocean characterization compared to magnetometry alone, suggesting that multi-instrument techniques can play a key role in revealing the interiors of Europa and other ocean worlds.

astro-ph.EP↗

Degradation-invariant Enhancement of Fundus Images via Pyramid Constraint Network

As an economical and efficient fundus imaging modality, retinal fundus images have been widely adopted in clinical fundus examination. Unfortunately, fundus images often suffer from quality degradation caused by imaging interferences, leading to misdiagnosis. Despite impressive enhancement performances that state-of-the-art methods have achieved, challenges remain in clinical scenarios. For boosting the clinical deployment of fundus image enhancement, this paper proposes the pyramid constraint to develop a degradation-invariant enhancement network (PCE-Net), which mitigates the demand for clinical data and stably enhances unknown data. Firstly, high-quality images are randomly degraded to form sequences of low-quality ones sharing the same content (SeqLCs). Then individual low-quality images are decomposed to Laplacian pyramid features (LPF) as the multi-level input for the enhancement. Subsequently, a feature pyramid constraint (FPC) for the sequence is introduced to enforce the PCE-Net to learn a degradation-invariant model. Extensive experiments have been conducted under the evaluation metrics of enhancement and segmentation. The effectiveness of the PCE-Net was demonstrated in comparison with state-of-the-art methods and the ablation study. The source code of this study is publicly available at https://github.com/HeverLaw/PCENet-Image-Enhancement.

eess.IV↗

Retinal Structure Detection in OCTA Image via Voting-based Multi-task Learning

Automated detection of retinal structures, such as retinal vessels (RV), the foveal avascular zone (FAZ), and retinal vascular junctions (RVJ), are of great importance for understanding diseases of the eye and clinical decision-making. In this paper, we propose a novel Voting-based Adaptive Feature Fusion multi-task network (VAFF-Net) for joint segmentation, detection, and classification of RV, FAZ, and RVJ in optical coherence tomography angiography (OCTA). A task-specific voting gate module is proposed to adaptively extract and fuse different features for specific tasks at two levels: features at different spatial positions from a single encoder, and features from multiple encoders. In particular, since the complexity of the microvasculature in OCTA images makes simultaneous precise localization and classification of retinal vascular junctions into bifurcation/crossing a challenging task, we specifically design a task head by combining the heatmap regression and grid classification. We take advantage of three different \textit{en face} angiograms from various retinal layers, rather than following existing methods that use only a single \textit{en face}. To facilitate further research, part of these datasets with the source code and evaluation benchmark have been released for public access:https://github.com/iMED-Lab/VAFF-Net.

eess.IV↗

SuperVessel: Segmenting High-resolution Vessel from Low-resolution Retinal Image

Vascular segmentation extracts blood vessels from images and serves as the basis for diagnosing various diseases, like ophthalmic diseases. Ophthalmologists often require high-resolution segmentation results for analysis, which leads to super-computational load by most existing methods. If based on low-resolution input, they easily ignore tiny vessels or cause discontinuity of segmented vessels. To solve these problems, the paper proposes an algorithm named SuperVessel, which gives out high-resolution and accurate vessel segmentation using low-resolution images as input. We first take super-resolution as our auxiliary branch to provide potential high-resolution detail features, which can be deleted in the test phase. Secondly, we propose two modules to enhance the features of the interested segmentation region, including an upsampling with feature decomposition (UFD) module and a feature interaction module (FIM) with a constraining loss to focus on the interested features. Extensive experiments on three publicly available datasets demonstrate that our proposed SuperVessel can segment more tiny vessels with higher segmentation accuracy IoU over 6%, compared with other state-of-the-art algorithms. Besides, the stability of SuperVessel is also stronger than other algorithms. We will release the code after the paper is published.

eess.IV↗

Weighted Concordance Index Loss-based Multimodal Survival Modeling for Radiation Encephalopathy Assessment in Nasopharyngeal Carcinoma Radiotherapy

Radiation encephalopathy (REP) is the most common complication for nasopharyngeal carcinoma (NPC) radiotherapy. It is highly desirable to assist clinicians in optimizing the NPC radiotherapy regimen to reduce radiotherapy-induced temporal lobe injury (RTLI) according to the probability of REP onset. To the best of our knowledge, it is the first exploration of predicting radiotherapy-induced REP by jointly exploiting image and non-image data in NPC radiotherapy regimen. We cast REP prediction as a survival analysis task and evaluate the predictive accuracy in terms of the concordance index (CI). We design a deep multimodal survival network (MSN) with two feature extractors to learn discriminative features from multimodal data. One feature extractor imposes feature selection on non-image data, and the other learns visual features from images. Because the priorly balanced CI (BCI) loss function directly maximizing the CI is sensitive to uneven sampling per batch. Hence, we propose a novel weighted CI (WCI) loss function to leverage all REP samples effectively by assigning their different weights with a dual average operation. We further introduce a temperature hyper-parameter for our WCI to sharpen the risk difference of sample pairs to help model convergence. We extensively evaluate our WCI on a private dataset to demonstrate its favourability against its counterparts. The experimental results also show multimodal data of NPC radiotherapy can bring more gains for REP risk prediction.

eess.IV↗