arXiv subjects

Jianyu Wu

Publications and source records attributed to Jianyu Wu.

18 recordsLinked to original sources

arXiv2026

Ultrafast electron crystallography reveals the atomic pathway of a light-driven correlated insulator-to-metal transition

Ultrafast phase transitions in correlated materials are often inferred from selected diffraction peak intensities or diffraction peak displacements, leaving the underlying three-dimensional atomic trajectories elusive. Resolving these trajectories is essential for identifying which atomic motions drive changes in electronic properties and how they couple to electronic degrees of freedom. We address this challenge in vanadium dioxide (VO2), a correlated oxide with a near-room-temperature transition between the insulating monoclinic (M1) phase and metallic rutile (R) phase. For this purpose, we introduce ultrafast three-dimensional electron diffraction, which enables refinement of the transient unit cell and internal V and O coordinates, revealing the V-V dimerization and zigzag motion during the phase transition. The refined atomic coordinates follow a linear trajectory in real space during the transition, in contrast to nonlinear or sequential transformation pathways inferred from more indirect observables in earlier work. Quantum many-body calculations treating each V-V pair as a correlated unit show that dimerization creates the level splitting responsible for the electronic gap, which is further enhanced by nonlocal electronic interactions between the paired V atoms. The gap collapses when dimerization is lost. This work turns time-resolved diffraction from order-parameter tracking into transient crystallography, directly connecting atomic trajectories to electronic mechanisms in correlated materials.

cond-mat.str-el↗

arXiv2026

DAPD: Dual-Anchored Policy Distillation

On-policy (self) distillation (OPSD) is increasingly adopted for language-model post-training. It strengthens the teacher with privileged information but can induce a privilege illusion: the student learns privilege-dependent behavior it cannot reproduce from its inference-time context, yet behaves as if the training-time privileged information remained available, ultimately degrading performance. In this paper, we identify information asymmetry between the privileged teacher and the student at inference as the root cause of this failure in OPSD. To resolve this asymmetry, we propose Dual-Anchored Policy Distillation (DAPD), a unified framework with two levels of anchoring. Dual-Path Anchoring (DPA) introduces a self-conditioned bridge and aligns reference and rollout behavior along two matched-information paths, preventing privilege-dependent behavior from being transferred to the inference-time student. Dual-Source Anchoring (DSA) applies these paths in both reference-to-rollout and rollout-to-reference directions, reducing reliance on privileged reference guidance while preserving correctness supervision. Extensive experiments show that DAPD significantly alleviates privilege illusion, outperforming OPSD on Qwen3-4B by +2.00 points on average across tasks. Notably, its gains persist across scales, reaching +2.69 at 4B and +2.78 at 32B.

cs.AI↗

arXiv2026

Accurate, Interdisciplinary and Transparent Structure-property Understanding with Deep Native Structural Reasoning

Structure-property relationships are foundational to biology, chemistry and materials science, where function, reactivity and physical response emerge from spatial, chemical and periodic organization. Mechanistically explaining these relationships requires interpreting structural evidence through scientific principles and physical constraints, from stereochemistry and bonding to symmetry, energetics and periodic order. However, applying artificial intelligence to this process presents a joint challenge of representation and reasoning: models must preserve domain-native structural information while showing how specific evidence supports predictions under these constraints. Here we introduce SciReasoner, a multimodal scientific foundation model for native structural reasoning across proteins, small molecules and inorganic crystals. SciReasoner discretizes coordinates, topologies and periodic connectivities into a unified structure-aware vocabulary, treating structural tokens as addressable evidence units during reasoning. In homology-controlled Gene Ontology prediction, SciReasoner improves Cellular Component annotation for low-homology and orphan-like proteins, increasing $F_{\max}$ from 0.42 to 0.55. In chemistry, it raises single-step retrosynthesis accuracy from 0.63 to 0.72 while generating fragment-level disconnection and precursor-verification traces. In materials science, its representations separate elemental and compound phases and resolve high- and low-band-gap regimes. Across 86 benchmarks, SciReasoner achieves state-of-the-art performance on 67 tasks. Double-blind expert evaluation rates its reasoning traces as preferred or at least comparable to those of a frontier large language model in 98% of cases. By making structure an inspectable substrate for reasoning under scientific constraints, SciReasoner connects accurate prediction with interpretable scientific inference.

cs.CL↗

arXiv2026

S3Mem: Structured Spatiotemporal Scene-Event Memory for Long-Horizon Interactive Question Answering

Long-horizon memory question answering often requires sparse evidence from heterogeneous histories, including events, object states, visual observations, temporal relations, and causal steps. Existing memory interfaces expand reader context, retrieve semantically related chunks, or expose graph neighborhoods, but they are not explicitly designed to select compact evidence for a fixed reader. We propose Structured Spatiotemporal Scene--Event Memory (S3Mem), a query-time memory interface that writes textual, visual, and agent-use histories into structured scene--event units and routes compact evidence packs to the reader. Its router scores candidate units, query anchors, and anchor--support links, enabling both single-hop selection and short multi-hop evidence chains without reader fine-tuning or test-time training. Across LoCoMo, EMemBench Visual Games, and AMA-Bench, S3Mem provides a strong score--token trade-off, with the clearest gains on localized event, state, temporal, causal, or provenance evidence. On LoCoMo, S3Mem reaches $0.48$ F1 and $0.40$ BLEU with (1{,}073) evidence tokens per question, about $15.8\times$ fewer than the LoCoMo reference. On EMemBench Visual Games, it obtains the best F1 and second-best accuracy with only $189$tokens.On AMA-Bench, it is not the highest-scoring method, but remains competitive while using the fewest reader-visible evidence tokens.

cs.CL↗

arXiv2026

Intern-S1-Pro: Scientific Multimodal Foundation Model at Trillion Scale

We introduce Intern-S1-Pro, the first one-trillion-parameter scientific multimodal foundation model. Scaling to this unprecedented size, the model delivers a comprehensive enhancement across both general and scientific domains. Beyond stronger reasoning and image-text understanding capabilities, its intelligence is augmented with advanced agent capabilities. Simultaneously, its scientific expertise has been vastly expanded to master over 100 specialized tasks across critical science fields, including chemistry, materials, life sciences, and earth sciences. Achieving this massive scale is made possible by the robust infrastructure support of XTuner and LMDeploy, which facilitates highly efficient Reinforcement Learning (RL) training at the 1-trillion parameter level while ensuring strict precision consistency between training and inference. By seamlessly integrating these advancements, Intern-S1-Pro further fortifies the fusion of general and specialized intelligence, working as a Specializable Generalist, demonstrating its position in the top tier of open-source models for general capabilities, while outperforming proprietary models in the depth of specialized scientific tasks.

cs.LG↗

arXiv2026

SciIF: Benchmarking Scientific Instruction Following Towards Rigorous Scientific Intelligence

As large language models (LLMs) transition from general knowledge retrieval to complex scientific discovery, their evaluation standards must also incorporate the rigorous norms of scientific inquiry. Existing benchmarks exhibit a critical blind spot: general instruction-following metrics focus on superficial formatting, while domain-specific scientific benchmarks assess only final-answer correctness, often rewarding models that arrive at the right result with the wrong reasons. To address this gap, we introduce scientific instruction following: the capability to solve problems while strictly adhering to the constraints that establish scientific validity. Specifically, we introduce SciIF, a multi-discipline benchmark that evaluates this capability by pairing university-level problems with a fixed catalog of constraints across three pillars: scientific conditions (e.g., boundary checks and assumptions), semantic stability (e.g., unit and symbol conventions), and specific processes(e.g., required numerical methods). Uniquely, SciIF emphasizes auditability, requiring models to provide explicit evidence of constraint satisfaction rather than implicit compliance. By measuring both solution correctness and multi-constraint adherence, SciIF enables finegrained diagnosis of compositional reasoning failures, ensuring that LLMs can function as reliable agents within the strict logical frameworks of science.

cs.AI↗

arXiv2026

Correlative Ultrafast Imaging of a Propagating Photo-Driven Phase Transition Using 4D STEM

Oxides exhibiting insulator-metal transitions are promising candidates for next generation ultrafast electronic switching devices. However, critical gaps remain in understanding the onset of strain and its dynamics as these materials undergo structural transitions, particularly in nanostructured configurations. Here, we present ultrafast four-dimensional scanning transmission electron microscopy enabling virtual imaging and strain mapping at every point in space and time. Using this technique, we directly probe a laser-excited phase transition in the prototypical material vanadium dioxide (VO2), recording its spatiotemporal propagation. This direct imaging capability reveals the dynamics of the structural phase transition and connects it to the resulting strain formation on picosecond timescales. This correlation reveals how atomic-scale symmetry breaking inherently generates lattice distortions, which then propagate to govern macroscopic property changes. Our findings provide new insights into the coupling between electronic, structural, and mechanical responses in correlated oxides under non-equilibrium conditions.

cond-mat.mtrl-sci↗

arXiv2026

Ultrafast laser-driven topological phase patterning

Microscopic and dynamic control over quantum states is essential for bridging fundamental studies of material properties to device function. Realizing such control at combined high spatial resolution and ultrafast temporal precision remains a major challenge. Here, we demonstrate femtosecond laser-driven patterning of topological quantum states in the Weyl semimetal WTe2. By engineering the excitation field into a transient optical grating, we spatially selectively and reversibly drive phase transitions between the topological Td and topologically trivial 1T* phases. Using ultrafast transmission electron microscopy, we directly visualize the formation of a periodic Td/1T* heterostructure, observe the propagation of a phase front, and analyze nanoscale confinement of coherently excited optical phonon modes. Our findings establish a platform for all-optical, spatially programmable, and reconfigurable control of quantum states, paving the way for optically addressable topological devices.

cond-mat.mtrl-sci↗

arXiv2025

SciReasoner: Laying the Scientific Reasoning Ground Across Disciplines

We present a scientific reasoning foundation model that aligns natural language with heterogeneous scientific representations. The model is pretrained on a 206B-token corpus spanning scientific text, pure sequences, and sequence-text pairs, then aligned via SFT on 40M instructions, annealed cold-start bootstrapping to elicit long-form chain-of-thought, and reinforcement learning with task-specific reward shaping, which instills deliberate scientific reasoning. It supports four capability families, covering up to 103 tasks across workflows: (i) faithful translation between text and scientific formats, (ii) text/knowledge extraction, (iii) property prediction, (iv) property classification, (v) unconditional and conditional sequence generation and design. Compared with specialist systems, our approach broadens instruction coverage, improves cross-domain generalization, and enhances fidelity. We detail data curation and training and show that cross-discipline learning strengthens transfer and downstream reliability. The model, instruct tuning datasets and the evaluation code are open-sourced at https://huggingface.co/SciReason and https://github.com/open-sciencelab/SciReason.

cs.CL↗

arXiv2025

FuncGenFoil: Airfoil Generation and Editing Model in Function Space

Aircraft manufacturing is the jewel in the crown of industry, in which generating high-fidelity airfoil geometries with controllable and editable representations remains a fundamental challenge. Existing deep learning methods, which typically rely on predefined parametric representations (e.g., Bézier) or discrete point sets, face an inherent trade-off between expressive power and resolution adaptability. To tackle this challenge, we introduce FuncGenFoil, a novel function-space generative model that directly reconstructs airfoil geometries as function curves. Our method inherits the advantages of arbitrary-resolution sampling and smoothness from parametric functions, as well as the strong expressiveness of discrete point-based representations. Empirical evaluations demonstrate that FuncGenFoil improves upon state-of-the-art methods in airfoil generation, achieving a relative 74.4% reduction in label error and a 23.2% increase in diversity on the AF-200K dataset. Our results highlight the advantages of function-space modeling for aerodynamic shape optimization, offering a powerful and flexible framework for high-fidelity airfoil design.

cs.LG↗

arXiv2025

A Survey of Scientific Large Language Models: From Data Foundations to Agent Frontiers

Scientific Large Language Models (Sci-LLMs) are transforming how knowledge is represented, integrated, and applied in scientific research, yet their progress is shaped by the complex nature of scientific data. This survey presents a comprehensive, data-centric synthesis that reframes the development of Sci-LLMs as a co-evolution between models and their underlying data substrate. We formulate a unified taxonomy of scientific data and a hierarchical model of scientific knowledge, emphasizing the multimodal, cross-scale, and domain-specific challenges that differentiate scientific corpora from general natural language processing datasets. We systematically review recent Sci-LLMs, from general-purpose foundations to specialized models across diverse scientific disciplines, alongside an extensive analysis of over 270 pre-/post-training datasets, showing why Sci-LLMs pose distinct demands -- heterogeneous, multi-scale, uncertainty-laden corpora that require representations preserving domain invariance and enabling cross-modal reasoning. On evaluation, we examine over 190 benchmark datasets and trace a shift from static exams toward process- and discovery-oriented assessments with advanced evaluation protocols. These data-centric analyses highlight persistent issues in scientific data development and discuss emerging solutions involving semi-automated annotation pipelines and expert validation. Finally, we outline a paradigm shift toward closed-loop systems where autonomous agents based on Sci-LLMs actively experiment, validate, and contribute to a living, evolving knowledge base. Collectively, this work provides a roadmap for building trustworthy, continually evolving artificial intelligence (AI) systems that function as a true partner in accelerating scientific discovery.

cs.CL↗

arXiv2025

CMT: A Cascade MAR with Topology Predictor for Multimodal Conditional CAD Generation

While accurate and user-friendly Computer-Aided Design (CAD) is crucial for industrial design and manufacturing, existing methods still struggle to achieve this due to their over-simplified representations or architectures incapable of supporting multimodal design requirements. In this paper, we attempt to tackle this problem from both methods and datasets aspects. First, we propose a cascade MAR with topology predictor (CMT), the first multimodal framework for CAD generation based on Boundary Representation (B-Rep). Specifically, the cascade MAR can effectively capture the ``edge-counters-surface'' priors that are essential in B-Reps, while the topology predictor directly estimates topology in B-Reps from the compact tokens in MAR. Second, to facilitate large-scale training, we develop a large-scale multimodal CAD dataset, mmABC, which includes over 1.3 million B-Rep models with multimodal annotations, including point clouds, text descriptions, and multi-view images. Extensive experiments show the superior of CMT in both conditional and unconditional CAD generation tasks. For example, we improve Coverage and Valid ratio by +10.68% and +10.3%, respectively, compared to state-of-the-art methods on ABC in unconditional generation. CMT also improves +4.01 Chamfer on image conditioned CAD generation on mmABC.

cs.CV↗

arXiv2025

SmartNote: An LLM-Powered, Personalised Release Note Generator That Just Works

The release note is a crucial document outlining changes in new software versions. Yet, many developers view the process of writing software release notes as a tedious and dreadful task. Consequently, numerous tools have been developed by researchers and practitioners to automate the generation of software release notes. However, these tools fail to consider project domain and target audience for personalisation, limiting their relevance and conciseness. Additionally, they suffer from limited applicability, often necessitating significant workflow adjustments and adoption efforts, hindering practical use and stressing developers. Despite recent advancements in natural language processing and the proven capabilities of large language models in various code and text-related tasks, there are no existing studies investigating the integration and utilisation of LLMs in automated release note generation. Therefore, we propose SmartNote, a novel and widely applicable release note generation approach that produces high-quality, contextually personalised release notes using LLM technology. SmartNote aggregates changes and uses an LLM to describe and summarise the changes using code, commit, and pull request details. It categorises and scores commits to generate structured and concise release notes of prioritised changes. Our human and automatic evaluations reveal that SmartNote outperforms or achieves comparable performance to DeepRelease, Conventional Changelog, and the projects'original release notes across four quality metrics: completeness, clarity, conciseness, and organisation. In both evaluations, SmartNote ranked first for completeness and organisation, while clarity ranked first in the human evaluation. A further evaluation demonstrates that SmartNote is effective in terms of context awareness and applicability.

cs.SE↗

arXiv2025

PathVLM-R1: A Reinforcement Learning-Driven Reasoning Model for Pathology Visual-Language Tasks

The diagnosis of pathological images is often limited by expert availability and regional disparities, highlighting the importance of automated diagnosis using Vision-Language Models (VLMs). Traditional multimodal models typically emphasize outcomes over the reasoning process, compromising the reliability of clinical decisions. To address the weak reasoning abilities and lack of supervised processes in pathological VLMs, we have innovatively proposed PathVLM-R1, a visual language model designed specifically for pathological images. We have based our model on Qwen2.5-VL-7B-Instruct and enhanced its performance for pathological tasks through meticulously designed post-training strategies. Firstly, we conduct supervised fine-tuning guided by pathological data to imbue the model with foundational pathological knowledge, forming a new pathological base model. Subsequently, we introduce Group Relative Policy Optimization (GRPO) and propose a dual reward-driven reinforcement learning optimization, ensuring strict constraint on logical supervision of the reasoning process and accuracy of results via cross-modal process reward and outcome accuracy reward. In the pathological image question-answering tasks, the testing results of PathVLM-R1 demonstrate a 14% improvement in accuracy compared to baseline methods, and it demonstrated superior performance compared to the Qwen2.5-VL-32B version despite having a significantly smaller parameter size. Furthermore, in out-domain data evaluation involving four medical imaging modalities: Computed Tomography (CT), dermoscopy, fundus photography, and Optical Coherence Tomography (OCT) images: PathVLM-R1's transfer performance improved by an average of 17.3% compared to traditional SFT methods. These results clearly indicate that PathVLM-R1 not only enhances accuracy but also possesses broad applicability and expansion potential.

cs.CV↗

arXiv2024

LLMCBench: Benchmarking Large Language Model Compression for Efficient Deployment

Although large language models (LLMs) have demonstrated their strong intelligence ability, the high demand for computation and storage hinders their practical application. To this end, many model compression techniques are proposed to increase the efficiency of LLMs. However, current researches only validate their methods on limited models, datasets, metrics, etc, and still lack a comprehensive evaluation under more general scenarios. So it is still a question of which model compression approach we should use under a specific case. To mitigate this gap, we present the Large Language Model Compression Benchmark (LLMCBench), a rigorously designed benchmark with an in-depth analysis for LLM compression algorithms. We first analyze the actual model production requirements and carefully design evaluation tracks and metrics. Then, we conduct extensive experiments and comparison using multiple mainstream LLM compression approaches. Finally, we perform an in-depth analysis based on the evaluation and provide useful insight for LLM compression design. We hope our LLMCBench can contribute insightful suggestions for LLM compression algorithm design and serve as a foundation for future research. Our code is available at https://github.com/AboveParadise/LLMCBench.

cs.CL↗

arXiv2024

AFBench: A Large-scale Benchmark for Airfoil Design

Data-driven generative models have emerged as promising approaches towards achieving efficient mechanical inverse design. However, due to prohibitively high cost in time and money, there is still lack of open-source and large-scale benchmarks in this field. It is mainly the case for airfoil inverse design, which requires to generate and edit diverse geometric-qualified and aerodynamic-qualified airfoils following the multimodal instructions, \emph{i.e.,} dragging points and physical parameters. This paper presents the open-source endeavors in airfoil inverse design, \emph{AFBench}, including a large-scale dataset with 200 thousand airfoils and high-quality aerodynamic and geometric labels, two novel and practical airfoil inverse design tasks, \emph{i.e.,} conditional generation on multimodal physical parameters, controllable editing, and comprehensive metrics to evaluate various existing airfoil inverse design methods. Our aim is to establish \emph{AFBench} as an ecosystem for training and evaluating airfoil inverse design methods, with a specific focus on data-driven controllable inverse design models by multimodal instructions capable of bridging the gap between ideas and execution, the academic research and industrial applications. We have provided baseline models, comprehensive experimental observations, and analysis to accelerate future research. Our baseline model is trained on an RTX 3090 GPU within 16 hours. The codebase, datasets and benchmarks will be available at \url{https://hitcslj.github.io/afbench/}.

cs.CE↗

arXiv2024

DiffFluid: Plain Diffusion Models are Effective Predictors of Flow Dynamics

We showcase the plain diffusion models with Transformers are effective predictors of fluid dynamics under various working conditions, e.g., Darcy flow and high Reynolds number. Unlike traditional fluid dynamical solvers that depend on complex architectures to extract intricate correlations and learn underlying physical states, our approach formulates the prediction of flow dynamics as the image translation problem and accordingly leverage the plain diffusion model to tackle the problem. This reduction in model design complexity does not compromise its ability to capture complex physical states and geometric features of fluid dynamical equations, leading to high-precision solutions. In preliminary tests on various fluid-related benchmarks, our DiffFluid achieves consistent state-of-the-art performance, particularly in solving the Navier-Stokes equations in fluid dynamics, with a relative precision improvement of +44.8%. In addition, we achieved relative improvements of +14.0% and +11.3% in the Darcy flow equation and the airfoil problem with Euler's equation, respectively. Code will be released at https://github.com/DongyuLUO/DiffFluid upon acceptance.

cs.LG↗

arXiv2022

Demystifying Software Release Note Issues on GitHub

Release notes (RNs) summarize main changes between two consecutive software versions and serve as a central source of information when users upgrade software. While producing high quality RNs can be hard and poses a variety of challenges to developers, a comprehensive empirical understanding of these challenges is still lacking. In this paper, we bridge this knowledge gap by manually analyzing 1,731 latest GitHub issues to build a comprehensive taxonomy of RN issues with four dimensions: Content, Presentation, Accessibility, and Production. Among these issues, nearly half (48.47%) of them focus on Production; Content, Accessibility, and Presentation take 25.61%, 17.65%, and 8.27%, respectively. We find that: 1) RN producers are more likely to miss information than to include incorrect information, especially for breaking changes; 2) improper layout may bury important information and confuse users; 3) many users find RNs inaccessible due to link deterioration, lack of notification, and obfuscate RN locations; 4) automating and regulating RN production remains challenging despite the great needs of RN producers. Our taxonomy not only pictures a roadmap to improve RN production in practice but also reveals interesting future research directions for automating RN production.

cs.SE↗