arXiv subjects

Jiaqi Xiong

Publications and source records attributed to Jiaqi Xiong.

9 recordsLinked to original sources

arXiv2026

Beyond Gene Reconstruction: Learning Cell Representations through Complementary Transcriptomic Views

The rapid growth of single-cell transcriptomic data has enabled the development of foundation models pretrained primarily by reconstructing masked expression values. This objective encourages these models to learn gene dependencies but does not directly optimize whole-cell representations, which are essential for many downstream tasks. To bridge this gap, we propose a contrastive pretraining framework that learns cell representations through complementary transcriptomic views. Since standard contrastive learning is not readily applicable to single-cell pretraining, we introduce specific adaptations along three dimensions --- co-expression-guided gene partitioning, expression-aware contrast-set construction, and competence-gated contrastive onset. Specifically, we first construct two complementary views of each cell by partitioning its genes according to their co-expression structure. Then, to prevent the model from using gene-set identity as a shortcut, we construct hard negatives by permuting expression values while keeping gene identities unchanged. Finally, we introduce a competence-aware controller to determine how the contrastive objective is applied. Experiments on cell-type annotation and gene regulatory network inference demonstrate competitive transfer under the evaluated protocols. In the six-network GRN evaluation, our method records the highest mean AUROC and AUPRC point estimates among the compared variants, while the highest-scoring variant differs across individual networks. These results establish complementary-view contrastive learning as an effective direction for single-cell pretraining beyond gene reconstruction.

cs.LG↗

arXiv2026

CrediBench: Building Web-Scale Network Datasets for Information Integrity

Automatically assessing the credibility of online sources presents an invaluable tool for navigating today's information ecosystem. However, existing approaches either depend on scarce and costly human annotations, or focus exclusively on assessments at the level of individual claims. Misinformation often spreads via interlinked web domains, whose connections evolve over time. Focusing on claims alone ignores these structural and temporal credibility signals evident in the changing web topology. Existing datasets fail to capture these central modalities in web domain credibility prediction: namely, internet topology, temporality and text (webpage) content. To address this gap, we present CrediBench, a dataset containing eights months of web graph data; of which we analyze the three months surrounding the 2024 U.S. federal elections, a time of heightened misinformation propagation online. Each monthly snapshot contains over 40 million nodes, their scraped webpage content, and over 1 billion hyperlink edges. CrediBench supports credibility prediction as both a regression (continuous credibility score) and a binary classification task (credible or not). For classification, we curate a novel binary label set containing 662,575 web domains labelled for boolean credibility, spanning four areas (misinformation, crowd-sourced, malware and phishing). Our empirical experiments support that all task modalities-graph, text and time-contribute significantly to achieving the best performance. In particular, our multi-modal regression model trained on CrediBench outperforms other configurations and existing baselines, decreasing Mean Average Error from 0.162 to 0.107 on the regression task, while the multi-modal classifier improves accuracy from 56% to 85% on the classification one. CrediBench, our proposed web-scale multi-modal dataset, is available on Huggingface for future research.

cs.SI↗

arXiv2026

DEAF: A Benchmark for Diagnostic Evaluation of Acoustic Faithfulness in Audio Language Models

Recent Audio Multimodal Large Language Models (Audio MLLMs) demonstrate impressive performance on speech benchmarks, yet it remains unclear whether these models genuinely process acoustic signals or rely on text-based semantic inference. To systematically study this question, we introduce DEAF (Diagnostic Evaluation of Acoustic Faithfulness), a benchmark of over 2,700 conflict stimuli spanning three acoustic dimensions: emotional prosody, background sounds, and speaker identity. Then, we design a controlled multi-level evaluation framework that progressively increases textual influence, ranging from semantic conflicts in the content to misleading prompts and their combination, allowing us to disentangle content-driven bias from prompt-induced sycophancy. We further introduce diagnostic metrics to quantify model reliance on textual cues over acoustic signals. Our evaluation of seven Audio MLLMs reveals a consistent pattern of text dominance: models are sensitive to acoustic variations, yet predictions are predominantly driven by textual inputs, revealing a gap between high performance on standard speech benchmarks and genuine acoustic understanding.

cs.AI↗

arXiv2026

Iterative Closed-Loop Motion Synthesis for Scaling the Capabilities of Humanoid Control

Physics-based humanoid control relies on training with motion datasets that have diverse data distributions. However, the fixed difficulty distribution of datasets limits the performance ceiling of the trained control policies. Additionally, the method of acquiring high-quality data through professional motion capture systems is constrained by costs, making it difficult to achieve large-scale scalability. To address these issues, we propose a closed-loop automated motion data generation and iterative framework. It can generate high-quality motion data with rich action semantics, including martial arts, dance, combat, sports, gymnastics, and more. Furthermore, our framework enables difficulty iteration of policies and data through physical metrics and objective evaluations, allowing the trained tracker to break through its original difficulty limits. On the PHC single-primitive tracker, using only approximately 1/10 of the AMASS dataset size, the average failure rate on the test set (2201 clips) is reduced by 45% compared to the baseline. Finally, we conduct comprehensive ablation and comparative experiments to highlight the rationality and advantages of our framework.

cs.RO↗

arXiv2026

Spherical Latent Motion Prior for Physics-Based Simulated Humanoid Control

Learning motion priors for physics-based humanoid control is an active research topic. Existing approaches mainly include variational autoencoders (VAE) and adversarial motion priors (AMP). VAE introduces information loss, and random latent sampling may sometimes produce invalid behaviors. AMP suffers from mode collapse and struggles to capture diverse motion skills. We present the Spherical Latent Motion Prior (SLMP), a two-stage method for learning motion priors. In the first stage, we train a high-quality motion tracking controller. In the second stage, we distill the tracking controller into a spherical latent space. A combination of distillation, a discriminator, and a discriminator-guided local semantic consistency constraint shapes a structured latent action space, allowing stable random sampling without information loss. To evaluate SLMP, we collect a two-hour human combat motion capture dataset and show that SLMP preserves fine motion detail without information loss, and random sampling yields semantically valid and stable behaviors. When applied to a two-agent physics-based combat task, SLMP produces human-like and physically plausible combat behaviors only using simple rule-based rewards. Furthermore, SLMP generalizes across different humanoid robot morphologies, demonstrating its transferability beyond a single simulated avatar.

cs.RO↗

arXiv2026

T2MBench: A Benchmark for Out-of-Distribution Text-to-Motion Generation

Most existing evaluations of text-to-motion generation focus on in-distribution textual inputs and a limited set of evaluation criteria, which restricts their ability to systematically assess model generalization and motion generation capabilities under complex out-of-distribution (OOD) textual conditions. To address this limitation, we propose a benchmark specifically designed for OOD text-to-motion evaluation, which includes a comprehensive analysis of 14 representative baseline models and the two datasets derived from evaluation results. Specifically, we construct an OOD prompt dataset consisting of 1,025 textual descriptions. Based on this prompt dataset, we introduce a unified evaluation framework that integrates LLM-based Evaluation, Multi-factor Motion evaluation, and Fine-grained Accuracy Evaluation. Our experimental results reveal that while different baseline models demonstrate strengths in areas such as text-to-motion semantic alignment, motion generalizability, and physical quality, most models struggle to achieve strong performance with Fine-grained Accuracy Evaluation. These findings highlight the limitations of existing methods in OOD scenarios and offer practical guidance for the design and evaluation of future production-level text-to-motion models.

cs.CV↗

arXiv2026

V-FAT: Benchmarking Visual Fidelity Against Text-bias

Recent advancements in Multimodal Large Language Models (MLLMs) have demonstrated impressive performance on standard visual reasoning benchmarks. However, there is growing concern that these models rely excessively on linguistic shortcuts rather than genuine visual grounding, a phenomenon we term Text Bias. In this paper, we investigate the fundamental tension between visual perception and linguistic priors. We decouple the sources of this bias into two dimensions: Internal Corpus Bias, stemming from statistical correlations in pretraining, and External Instruction Bias, arising from the alignment-induced tendency toward sycophancy. To quantify this effect, we introduce V-FAT (Visual Fidelity Against Text-bias), a diagnostic benchmark comprising 4,026 VQA instances across six semantic domains. V-FAT employs a Three-Level Evaluation Framework that systematically increases the conflict between visual evidence and textual information: (L1) internal bias from atypical images, (L2) external bias from misleading instructions, and (L3) synergistic bias where both coincide. We introduce the Visual Robustness Score (VRS), a metric designed to penalize "lucky" linguistic guesses and reward true visual fidelity. Our evaluation of 12 frontier MLLMs reveals that while models excel in existing benchmarks, they experience significant visual collapse under high linguistic dominance.

cs.CL↗

arXiv2025

PillarTrack:Boosting Pillar Representation for Transformer-based 3D Single Object Tracking on Point Clouds

LiDAR-based 3D single object tracking (3D SOT) is a critical issue in robotics and autonomous driving. Existing 3D SOT methods typically adhere to a point-based processing pipeline, wherein the re-sampling operation invariably leads to either redundant or missing information, thereby impacting performance. To address these issues, we propose PillarTrack, a novel pillar-based 3D SOT framework. First, we transform sparse point clouds into dense pillars to preserve the local and global geometrics. Second, we propose a Pyramid-Encoded Pillar Feature Encoder (PE-PFE) design to enhance the robustness of pillar feature for translation/rotation/scale. Third, we present an efficient Transformer-based backbone from the perspective of modality differences. Finally, we construct our PillarTrack based on above designs. Extensive experiments show that our method achieves comparable performance on the KITTI and NuScenes datasets, significantly enhancing the performance of the baseline.

cs.CV↗

arXiv2025

Cross-Attention Graph Neural Networks for Inferring Gene Regulatory Networks with Skewed Degree Distribution

Inferencing Gene Regulatory Networks (GRNs) from gene expression data is a pivotal challenge in systems biology, and several innovative computational methods have been introduced. However, most of these studies have not considered the skewed degree distribution of genes. Specifically, some genes may regulate multiple target genes while some genes may be regulated by multiple regulator genes. Such a skewed degree distribution issue significantly complicates the application of directed graph embedding methods. To tackle this issue, we propose the Cross-Attention Complex Dual Graph Embedding Model (XATGRN). Our XATGRN employs a cross-attention mechanism to effectively capture intricate gene interactions from gene expression profiles. Additionally, it uses a Dual Complex Graph Embedding approach to manage the skewed degree distribution, thereby ensuring precise prediction of regulatory relationships and their directionality. Our model consistently outperforms existing state-of-the-art methods across various datasets, underscoring its efficacy in elucidating complex gene regulatory mechanisms. Our codes used in this paper are publicly available at: https://github.com/kikixiong/XATGRN.

q-bio.QM↗