arXiv subjects

Jiaxiang Liu

Publications and source records attributed to Jiaxiang Liu.

At least 37 records · Page 2Linked to original sources

arXiv2026

MM-NeuroOnco: A Multimodal Benchmark and Instruction Dataset for MRI-Based Brain Tumor Diagnosis

Accurate brain tumor diagnosis requires models to not only detect lesions but also generate clinically interpretable reasoning grounded in imaging manifestations, yet existing public datasets remain limited in annotation richness and diagnostic semantics. To bridge this gap, we introduce MM-NeuroOnco, a large-scale multimodal benchmark and instruction-tuning dataset for brain tumor MRI understanding, consisting of 24,726 MRI slices from 20 data sources paired with approximately 200,000 semantically enriched multimodal instructions spanning diverse tumor subtypes and imaging modalities. To mitigate the scarcity and high cost of diagnostic semantic annotations, we develop a multi-model collaborative pipeline for automated medical information completion and quality control, enabling the generation of diagnosis-related semantics beyond mask-only annotations. Building upon this dataset, we further construct MM-NeuroOnco-Bench, a manually annotated evaluation benchmark with a rejection-aware setting to reduce biases inherent in closed-ended question formats. Evaluation across ten representative models shows that even the strongest baseline, Gemini 3 Flash, achieves only 41.88% accuracy on diagnosis-related questions, highlighting the substantial challenges of multimodal brain tumor diagnostic understanding. Leveraging MM-NeuroOnco, we further propose NeuroOnco-GPT, which achieves a 27% absolute accuracy improvement on diagnostic questions following fine-tuning. This result demonstrates the effectiveness of our dataset and benchmark in advancing clinically grounded multimodal diagnostic reasoning. Code and dataset are publicly available at: https://github.com/gfnnnb/MM-NeuroOnco

cs.CV↗

arXiv2026

GRIT: Graph-Regularized Logit Refinement for Zero-shot Cell Type Annotation

Cell type annotation is a fundamental step in the analysis of single-cell RNA sequencing (scRNA-seq) data. In practice, human experts often rely on the structure revealed by principal component analysis (PCA) followed by $k$-nearest neighbor ($k$-NN) graph construction to guide annotation. While effective, this process is labor-intensive and does not scale to large datasets. Recent advances in CLIP-style models offer a promising path toward automating cell type annotation. By aligning scRNA-seq profiles with natural language descriptions, models like LangCell enable zero-shot annotation. While LangCell demonstrates decent zero-shot performance, its predictions remain suboptimal. In this paper, we propose a principled inference-time paradigm for zero-shot cell type annotation (GRIT) which bridges the scalability of pre-trained foundation models with the structural robustness relied upon in human expert annotation workflows. Specifically, we enforce local consistency of the zero-shot CLIP logits over the task-specific PCA-based $k$-NN graph. We evaluate our approach on 14 annotated human scRNA-seq datasets from 4 distinct studies, spanning 11 organs and over 200,000 single cells. Our method consistently improves zero-shot annotation accuracy, achieving accuracy gains of up to 10\%. Further analysis showcase the mechanism by which GRIT effectively propagates correct signals through the graph, pulling back mislabeled cells toward more accurate predictions. The method is training-free, model-agnostic, and serves as a simple yet effective plug-in for enhancing zero-shot cell type annotation.

q-bio.GN↗

arXiv2026

ERNIE 5.0 Technical Report

In this report, we introduce ERNIE 5.0, a natively autoregressive foundation model desinged for unified multimodal understanding and generation across text, image, video, and audio. All modalities are trained from scratch under a unified next-group-of-tokens prediction objective, based on an ultra-sparse mixture-of-experts (MoE) architecture with modality-agnostic expert routing. To address practical challenges in large-scale deployment under diverse resource constraints, ERNIE 5.0 adopts a novel elastic training paradigm. Within a single pre-training run, the model learns a family of sub-models with varying depths, expert capacities, and routing sparsity, enabling flexible trade-offs among performance, model size, and inference latency in memory- or time-constrained scenarios. Moreover, we systematically address the challenges of scaling reinforcement learning to unified foundation models, thereby guaranteeing efficient and stable post-training under ultra-sparse MoE architectures and diverse multimodal settings. Extensive experiments demonstrate that ERNIE 5.0 achieves strong and balanced performance across multiple modalities. To the best of our knowledge, among publicly disclosed models, ERNIE 5.0 represents the first production-scale realization of a trillion-parameter unified autoregressive model that supports both multimodal understanding and generation. To facilitate further research, we present detailed visualizations of modality-agnostic expert routing in the unified model, alongside comprehensive empirical analysis of elastic training, aiming to offer profound insights to the community.

cs.CL↗

arXiv2026

BMAM: Brain-inspired Multi-Agent Memory Framework

Language-model-based agents operating over extended interaction horizons face persistent challenges in preserving temporally grounded information and maintaining behavioral consistency across sessions, a failure mode we term soul erosion. We present BMAM (Brain-inspired Multi-Agent Memory), a general-purpose memory architecture that models agent memory as a set of functionally specialized subsystems rather than a single unstructured store. Inspired by cognitive memory systems, BMAM decomposes memory into episodic, semantic, salience-aware, and control-oriented components that operate at complementary time scales. To support long-horizon reasoning, BMAM organizes episodic memories along explicit timelines and retrieves evidence by fusing multiple complementary signals. Experiments on the LoCoMo benchmark show that BMAM achieves 78.45 percent accuracy under the standard long-horizon evaluation setting, and ablation analyses confirm that the hippocampus-inspired episodic memory subsystem plays a critical role in temporal reasoning.

cs.CL↗

arXiv2026

A Formally Verified Procedure for Width Inference in FIRRTL

FIRRTL is an intermediate representation language for Register Transfer Level (RTL) hardware designs. In FIRRTL programs, the bit widths of many components are not specified explicitly and must be inferred during compilation. In mainstream FIRRTL compilers, such as the official compiler firtool, width inference is conducted by a compilation pass referred to as InferWidths, which may fail even for simple FIRRTL programs. In this paper, we thoroughly investigate the width inference problem for FIRRTL programs. We show that, if the constraints obtained from a FIRRTL program are satisfiable, there exists a unique least solution. Based on this result, we propose a complete procedure for solving the width inference problem. We implement it in the interactive theorem prover Rocq and prove its functional correctness. From the Rocq implementation, we extract an OCaml implementation, which is the first formally verified implementation of the InferWidths pass. Extensive experiments demonstrate that our approach can solve more instances than the official InferWidths pass in firtool, normally with high efficiency.

cs.PL↗

arXiv2026

An approach for systematic decomposition of complex llm tasks

Large Language Models (LLMs) suffer from reliability issues on complex tasks, as existing decomposition methods are heuristic and rely on agent or manual decomposition. This work introduces a novel, systematic decomposition framework that we call Analysis of CONstraint-Induced Complexity (ACONIC), which models the task as a constraint problem and leverages formal complexity measures to guide decomposition. On combinatorial (SAT-Bench) and LLM database querying tasks (Spider), we find that by decomposing the tasks following the measure of complexity, agent can perform considerably better.

cs.AI↗

arXiv2025

Beyond N-grams: A Hierarchical Reward Learning Framework for Clinically-Aware Medical Report Generation

Automatic medical report generation can greatly reduce the workload of doctors, but it is often unreliable for real-world deployment. Current methods can write formally fluent sentences but may be factually flawed, introducing serious medical errors known as clinical hallucinations, which make them untrustworthy for diagnosis. To bridge this gap, we introduce HiMed-RL, a Hierarchical Medical Reward Learning Framework designed to explicitly prioritize clinical quality. HiMed-RL moves beyond simple text matching by deconstructing reward learning into three synergistic levels: it first ensures linguistic fluency at the token-level, then enforces factual grounding at the concept-level by aligning key medical terms with expert knowledge, and finally assesses high-level diagnostic consistency at the semantic-level using a specialized LLM verifier. This hierarchical reward is implemented via a Human-inspired Dynamic Reward Adjustment, a strategy which first teaches the model to learn basic facts before progressing to more complex diagnostic reasoning. Experimentally, HiMed-3B achieves state-of-the-art performance on both in-domain and out-of-domain benchmarks, particularly on the latter, with an improvement of 12.1% over the second-best baseline. Our work provides a robust paradigm for generating reports that not only improve fluency but clinical fine-grained quality.

cs.CE↗

arXiv2025

Med-GLIP: Advancing Medical Language-Image Pre-training with Large-scale Grounded Dataset

Medical image grounding aims to align natural language phrases with specific regions in medical images, serving as a foundational task for intelligent diagnosis, visual question answering (VQA), and automated report generation (MRG). However, existing research is constrained by limited modality coverage, coarse-grained annotations, and the absence of a unified, generalizable grounding framework. To address these challenges, we construct a large-scale medical grounding dataset Med-GLIP-5M comprising over 5.3 million region-level annotations across seven imaging modalities, covering diverse anatomical structures and pathological findings. The dataset supports both segmentation and grounding tasks with hierarchical region labels, ranging from organ-level boundaries to fine-grained lesions. Based on this foundation, we propose Med-GLIP, a modality-aware grounding framework trained on Med-GLIP-5M. Rather than relying on explicitly designed expert modules, Med-GLIP implicitly acquires hierarchical semantic understanding from diverse training data -- enabling it to recognize multi-granularity structures, such as distinguishing lungs from pneumonia lesions. Extensive experiments demonstrate that Med-GLIP consistently outperforms state-of-the-art baselines across multiple grounding benchmarks. Furthermore, integrating its spatial outputs into downstream tasks, including medical VQA and report generation, leads to substantial performance gains. Our dataset will be released soon.

cs.CV↗

arXiv2025

3D-RAD: A Comprehensive 3D Radiology Med-VQA Dataset with Multi-Temporal Analysis and Diverse Diagnostic Tasks

Medical Visual Question Answering (Med-VQA) holds significant potential for clinical decision support, yet existing efforts primarily focus on 2D imaging with limited task diversity. This paper presents 3D-RAD, a large-scale dataset designed to advance 3D Med-VQA using radiology CT scans. The 3D-RAD dataset encompasses six diverse VQA tasks: anomaly detection, image observation, medical computation, existence detection, static temporal diagnosis, and longitudinal temporal diagnosis. It supports both open- and closed-ended questions while introducing complex reasoning challenges, including computational tasks and multi-stage temporal analysis, to enable comprehensive benchmarking. Extensive evaluations demonstrate that existing vision-language models (VLMs), especially medical VLMs exhibit limited generalization, particularly in multi-temporal tasks, underscoring the challenges of real-world 3D diagnostic reasoning. To drive future advancements, we release a high-quality training set 3D-RAD-T of 136,195 expert-aligned samples, showing that fine-tuning on this dataset could significantly enhance model performance. Our dataset and code, aiming to catalyze multimodal medical AI research and establish a robust foundation for 3D medical visual understanding, are publicly available at https://github.com/Tang-xiaoxiao/3D-RAD.

cs.CV↗

arXiv2025

Self-Calibrated Consistency can Fight Back for Adversarial Robustness in Vision-Language Models

Pre-trained vision-language models (VLMs) such as CLIP have demonstrated strong zero-shot capabilities across diverse domains, yet remain highly vulnerable to adversarial perturbations that disrupt image-text alignment and compromise reliability. Existing defenses typically rely on adversarial fine-tuning with labeled data, limiting their applicability in zero-shot settings. In this work, we identify two key weaknesses of current CLIP adversarial attacks -- lack of semantic guidance and vulnerability to view variations -- collectively termed semantic and viewpoint fragility. To address these challenges, we propose Self-Calibrated Consistency (SCC), an effective test-time defense. SCC consists of two complementary modules: Semantic consistency, which leverages soft pseudo-labels from counterattack warm-up and multi-view predictions to regularize cross-modal alignment and separate the target embedding from confusable negatives; and Spatial consistency, aligning perturbed visual predictions via augmented views to stabilize inference under adversarial perturbations. Together, these modules form a plug-and-play inference strategy. Extensive experiments on 22 benchmarks under diverse attack settings show that SCC consistently improves the zero-shot robustness of CLIP while maintaining accuracy, and can be seamlessly integrated with other VLMs for further gains. These findings highlight the great potential of establishing an adversarially robust paradigm from CLIP, with implications extending to broader vision-language domains such as BioMedCLIP.

cs.CV↗

arXiv2025

Modest-Align: Data-Efficient Alignment for Vision-Language Models

Cross-modal alignment aims to map heterogeneous modalities into a shared latent space, as exemplified by models like CLIP, which benefit from large-scale image-text pretraining for strong recognition capabilities. However, when operating in resource-constrained settings with limited or low-quality data, these models often suffer from overconfidence and degraded performance due to the prevalence of ambiguous or weakly correlated image-text pairs. Current contrastive learning approaches, which rely on single positive pairs, further exacerbate this issue by reinforcing overconfidence on uncertain samples. To address these challenges, we propose Modest-Align, a lightweight alignment framework designed for robustness and efficiency. Our approach leverages two complementary strategies -- Random Perturbation, which introduces controlled noise to simulate uncertainty, and Embedding Smoothing, which calibrates similarity distributions in the embedding space. These mechanisms collectively reduce overconfidence and improve performance on noisy or weakly aligned samples. Extensive experiments across multiple benchmark datasets demonstrate that Modest-Align outperforms state-of-the-art methods in retrieval tasks, achieving competitive results with over 100x less training data and 600x less GPU time than CLIP. Our method offers a practical and scalable solution for cross-modal alignment in real-world, low-resource scenarios.

cs.CV↗

arXiv2025

DentVLM: A Multimodal Vision-Language Model for Comprehensive Dental Diagnosis and Enhanced Clinical Practice

Diagnosing and managing oral diseases necessitate advanced visual interpretation across diverse imaging modalities and integrated information synthesis. While current AI models excel at isolated tasks, they often fall short in addressing the complex, multimodal requirements of comprehensive clinical dental practice. Here we introduce DentVLM, a multimodal vision-language model engineered for expert-level oral disease diagnosis. DentVLM was developed using a comprehensive, large-scale, bilingual dataset of 110,447 images and 2.46 million visual question-answering (VQA) pairs. The model is capable of interpreting seven 2D oral imaging modalities across 36 diagnostic tasks, significantly outperforming leading proprietary and open-source models by 19.6% higher accuracy for oral diseases and 27.9% for malocclusions. In a clinical study involving 25 dentists, evaluating 1,946 patients and encompassing 3,105 QA pairs, DentVLM surpassed the diagnostic performance of 13 junior dentists on 21 of 36 tasks and exceeded that of 12 senior dentists on 12 of 36 tasks. When integrated into a collaborative workflow, DentVLM elevated junior dentists' performance to senior levels and reduced diagnostic time for all practitioners by 15-22%. Furthermore, DentVLM exhibited promising performance across three practical utility scenarios, including home-based dental health management, hospital-based intelligent diagnosis and multi-agent collaborative interaction. These findings establish DentVLM as a robust clinical decision support tool, poised to enhance primary dental care, mitigate provider-patient imbalances, and democratize access to specialized medical expertise within the field of dentistry.

cs.CV↗

arXiv2025

V2T-CoT: From Vision to Text Chain-of-Thought for Medical Reasoning and Diagnosis

Recent advances in multimodal techniques have led to significant progress in Medical Visual Question Answering (Med-VQA). However, most existing models focus on global image features rather than localizing disease-specific regions crucial for diagnosis. Additionally, current research tends to emphasize answer accuracy at the expense of the reasoning pathway, yet both are crucial for clinical decision-making. To address these challenges, we propose From Vision to Text Chain-of-Thought (V2T-CoT), a novel approach that automates the localization of preference areas within biomedical images and incorporates this localization into region-level pixel attention as knowledge for Vision CoT. By fine-tuning the vision language model on constructed R-Med 39K dataset, V2T-CoT provides definitive medical reasoning paths. V2T-CoT integrates visual grounding with textual rationale generation to establish precise and explainable diagnostic results. Experimental results across four Med-VQA benchmarks demonstrate state-of-the-art performance, achieving substantial improvements in both performance and interpretability.

cs.CE↗

arXiv2025

Know-MRI: A Knowledge Mechanisms Revealer&Interpreter for Large Language Models

As large language models (LLMs) continue to advance, there is a growing urgency to enhance the interpretability of their internal knowledge mechanisms. Consequently, many interpretation methods have emerged, aiming to unravel the knowledge mechanisms of LLMs from various perspectives. However, current interpretation methods differ in input data formats and interpreting outputs. The tools integrating these methods are only capable of supporting tasks with specific inputs, significantly constraining their practical applications. To address these challenges, we present an open-source Knowledge Mechanisms Revealer&Interpreter (Know-MRI) designed to analyze the knowledge mechanisms within LLMs systematically. Specifically, we have developed an extensible core module that can automatically match different input data with interpretation methods and consolidate the interpreting outputs. It enables users to freely choose appropriate interpretation methods based on the inputs, making it easier to comprehensively diagnose the model's internal knowledge mechanisms from multiple perspectives. Our code is available at https://github.com/nlpkeg/Know-MRI. We also provide a demonstration video on https://youtu.be/NVWZABJ43Bs.

cs.CL↗

arXiv2025

Leveraging Pretrained Diffusion Models for Zero-Shot Part Assembly

3D part assembly aims to understand part relationships and predict their 6-DoF poses to construct realistic 3D shapes, addressing the growing demand for autonomous assembly, which is crucial for robots. Existing methods mainly estimate the transformation of each part by training neural networks under supervision, which requires a substantial quantity of manually labeled data. However, the high cost of data collection and the immense variability of real-world shapes and parts make traditional methods impractical for large-scale applications. In this paper, we propose first a zero-shot part assembly method that utilizes pre-trained point cloud diffusion models as discriminators in the assembly process, guiding the manipulation of parts to form realistic shapes. Specifically, we theoretically demonstrate that utilizing a diffusion model for zero-shot part assembly can be transformed into an Iterative Closest Point (ICP) process. Then, we propose a novel pushing-away strategy to address the overlap parts, thereby further enhancing the robustness of the method. To verify our work, we conduct extensive experiments and quantitative comparisons to several strong baseline methods, demonstrating the effectiveness of the proposed approach, which even surpasses the supervised learning method. The code has been released on https://github.com/Ruiyuan-Zhang/Zero-Shot-Assembly.

cs.CV↗

arXiv2025

R-LLaVA: Improving Med-VQA Understanding through Visual Region of Interest

Artificial intelligence has made significant strides in medical visual question answering (Med-VQA), yet prevalent studies often interpret images holistically, overlooking the visual regions of interest that may contain crucial information, potentially aligning with a doctor's prior knowledge that can be incorporated with minimal annotations (e.g., bounding boxes). To address this gap, this paper introduces R-LLaVA, designed to enhance biomedical VQA understanding by integrating simple medical annotations as prior knowledge directly into the image space through CLIP. These annotated visual regions of interest are then fed into the LLaVA model during training, aiming to enrich the model's understanding of biomedical queries. Experimental evaluation on four standard Med-VQA datasets demonstrates R-LLaVA's superiority over existing state-of-the-art (SoTA) methods. Additionally, to verify the model's capability in visual comprehension, a novel multiple-choice medical visual understanding dataset is introduced, confirming the positive impact of focusing on visual regions of interest in advancing biomedical VQA understanding.

cs.CV↗

arXiv2025

Enhancing Large Language Models with Pseudo- and Multisource- Knowledge Graphs for Open-ended Question Answering

Mitigating the hallucinations of Large Language Models is a crucial task. Although some existing methods employ self-enhancement techniques, they fall short of effectively addressing unknown factual hallucinations. Meanwhile, Knowledge Graph (KG) enhancement approaches fail to address the generalization across different KG sources and the enhancement of open-ended answer questions simultaneously. To tackle these limitations, we propose a framework that combines Pseudo-Graph Generation and Atomic Knowledge Verification (PG\&AKV). Enhancement of open-ended question-answering begins with leveraging the Pseudo-Graph Generation to provide the related knowledge framework. Subsequently, Atomic Knowledge Verification utilizes atomic-level knowledge querying and verification to achieve generalizability under different KG sources. Compared to the baseline, this approach yields a minimum improvement of 11.5 in the ROUGE-L score for open-ended questions. For precise-answered questions, we observe a minimum accuracy improvement of 7.5%. Moreover, PG\&AKV also exhibits generalizability across different KG sources. Utilizing KG different from the question sources, PG\&AKV can even achieve at least a 3.5 % performance improvement. In summary, our results pave the way for enhancing LLMs by incorporating Pseudo- and Multisource-KGs, particularly in the filed of open-ended questions.

cs.CL↗

arXiv2025

Capability Localization: Capabilities Can be Localized rather than Individual Knowledge

Large scale language models have achieved superior performance in tasks related to natural language processing, however, it is still unclear how model parameters affect performance improvement. Previous studies assumed that individual knowledge is stored in local parameters, and the storage form of individual knowledge is dispersed parameters, parameter layers, or parameter chains, which are not unified. We found through fidelity and reliability evaluation experiments that individual knowledge cannot be localized. Afterwards, we constructed a dataset for decoupling experiments and discovered the potential for localizing data commonalities. To further reveal this phenomenon, this paper proposes a Commonality Neuron Localization (CNL) method, which successfully locates commonality neurons and achieves a neuron overlap rate of 96.42% on the GSM8K dataset. Finally, we have demonstrated through cross data experiments that commonality neurons are a collection of capability neurons that possess the capability to enhance performance. Our code is available at https://github.com/nlpkeg/Capability-Neuron-Localization.

cs.CL↗