arXiv subjects

Jiaxing Zhang

Publications and source records attributed to Jiaxing Zhang.

61 records · Page 4Linked to original sources

arXiv2022

BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model

Pretrained language models have served as important backbones for natural language processing. Recently, in-domain pretraining has been shown to benefit various domain-specific downstream tasks. In the biomedical domain, natural language generation (NLG) tasks are of critical importance, while understudied. Approaching natural language understanding (NLU) tasks as NLG achieves satisfying performance in the general domain through constrained language generation or language prompting. We emphasize the lack of in-domain generative language models and the unsystematic generative downstream benchmarks in the biomedical domain, hindering the development of the research community. In this work, we introduce the generative language model BioBART that adapts BART to the biomedical domain. We collate various biomedical language generation tasks including dialogue, summarization, entity linking, and named entity recognition. BioBART pretrained on PubMed abstracts has enhanced performance compared to BART and set strong baselines on several tasks. Furthermore, we conduct ablation studies on the pretraining tasks for BioBART and find that sentence permutation has negative effects on downstream tasks.

cs.CL↗

arXiv2020

Long Short-Term Sample Distillation

In the past decade, there has been substantial progress at training increasingly deep neural networks. Recent advances within the teacher--student training paradigm have established that information about past training updates show promise as a source of guidance during subsequent training steps. Based on this notion, in this paper, we propose Long Short-Term Sample Distillation, a novel training policy that simultaneously leverages multiple phases of the previous training process to guide the later training updates to a neural network, while efficiently proceeding in just one single generation pass. With Long Short-Term Sample Distillation, the supervision signal for each sample is decomposed into two parts: a long-term signal and a short-term one. The long-term teacher draws on snapshots from several epochs ago in order to provide steadfast guidance and to guarantee teacher--student differences, while the short-term one yields more up-to-date cues with the goal of enabling higher-quality updates. Moreover, the teachers for each sample are unique, such that, overall, the model learns from a very diverse set of teachers. Comprehensive experimental results across a range of vision and NLP tasks demonstrate the effectiveness of this new training method.

cs.CV↗

arXiv2020

Accelerating Reinforcement Learning with a Directional-Gaussian-Smoothing Evolution Strategy

Evolution strategy (ES) has been shown great promise in many challenging reinforcement learning (RL) tasks, rivaling other state-of-the-art deep RL methods. Yet, there are two limitations in the current ES practice that may hinder its otherwise further capabilities. First, most current methods rely on Monte Carlo type gradient estimators to suggest search direction, where the policy parameter is, in general, randomly sampled. Due to the low accuracy of such estimators, the RL training may suffer from slow convergence and require more iterations to reach optimal solution. Secondly, the landscape of reward functions can be deceptive and contains many local maxima, causing ES algorithms to prematurely converge and be unable to explore other parts of the parameter space with potentially greater rewards. In this work, we employ a Directional Gaussian Smoothing Evolutionary Strategy (DGS-ES) to accelerate RL training, which is well-suited to address these two challenges with its ability to i) provide gradient estimates with high accuracy, and ii) find nonlocal search direction which lays stress on large-scale variation of the reward function and disregards local fluctuation. Through several benchmark RL tasks demonstrated herein, we show that DGS-ES is highly scalable, possesses superior wall-clock time, and achieves competitive reward scores to other popular policy gradient and ES approaches.

cs.LG↗

arXiv2014

Scale-Invariant Convolutional Neural Networks

Even though convolutional neural networks (CNN) has achieved near-human performance in various computer vision tasks, its ability to tolerate scale variations is limited. The popular practise is making the model bigger first, and then train it with data augmentation using extensive scale-jittering. In this paper, we propose a scaleinvariant convolutional neural network (SiCNN), a modeldesigned to incorporate multi-scale feature exaction and classification into the network structure. SiCNN uses a multi-column architecture, with each column focusing on a particular scale. Unlike previous multi-column strategies, these columns share the same set of filter parameters by a scale transformation among them. This design deals with scale variation without blowing up the model size. Experimental results show that SiCNN detects features at various scales, and the classification result exhibits strong robustness against object scale variations.

cs.CV↗

arXiv2014

The Application of Two-level Attention Models in Deep Convolutional Neural Network for Fine-grained Image Classification

Fine-grained classification is challenging because categories can only be discriminated by subtle and local differences. Variances in the pose, scale or rotation usually make the problem more difficult. Most fine-grained classification systems follow the pipeline of finding foreground object or object parts (where) to extract discriminative features (what). In this paper, we propose to apply visual attention to fine-grained classification task using deep neural network. Our pipeline integrates three types of attention: the bottom-up attention that propose candidate patches, the object-level top-down attention that selects relevant patches to a certain object, and the part-level top-down attention that localizes discriminative parts. We combine these attentions to train domain-specific deep nets, then use it to improve both the what and where aspects. Importantly, we avoid using expensive annotations like bounding box or part information from end-to-end. The weak supervision constraint makes our work easier to generalize. We have verified the effectiveness of the method on the subsets of ILSVRC2012 dataset and CUB200_2011 dataset. Our pipeline delivered significant improvements and achieved the best accuracy under the weakest supervision condition. The performance is competitive against other methods that rely on additional annotations.

cs.CV↗

arXiv2014

Attentional Neural Network: Feature Selection Using Cognitive Feedback

Attentional Neural Network is a new framework that integrates top-down cognitive bias and bottom-up feature extraction in one coherent architecture. The top-down influence is especially effective when dealing with high noise or difficult segmentation problems. Our system is modular and extensible. It is also easy to train and cheap to run, and yet can accommodate complex behaviors. We obtain classification accuracy better than or competitive with state of art results on the MNIST variation dataset, and successfully disentangle overlaid digits with high success rates. We view such a general purpose framework as an essential foundation for a larger system emulating the cognitive abilities of the whole brain.

cs.CV↗

arXiv2005

First-principles calculation on the transport properties of molecular wires between Au clusters under equilibrium

Based on the matrix Green's function method combined with hybrid tight-binding / density functional theory, we calculate the conductances of a series of gold-dithiol molecule-gold junctions including benzenedithiol (BDT), benzenedimethanethiol (BDMT), hexanedithiol (HDT), octanedithiol (ODT) and decanedithiol (DDT). An atomically-contacted extended molecule model is used in our calculation. As an important procedure, we determine the position of the Fermi level by the energy reference according to the results from ultraviolet photoelectron spectroscopy (UPS) experiments. After considering the experimental uncertainty in UPS measurement, the calculated results of molecular conductances near the Fermi level qualitatively agree with the experimental values measured by Tao et. al. [{\it Science} 301, 1221 (2003); {\it J. Am. Chem. Soc.} 125, 16164 (2003); {\it Nano. Lett.} 4, 267 (2004).]

cond-mat.mes-hall↗