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Jiaying Zhou

Publications and source records attributed to Jiaying Zhou.

At least 19 recordsLinked to original sources

MM-IssueLoc: A Controlled Benchmark for Evaluating Visual Evidence in Multimodal Repository-Level Issue Localization

Real repository issues routinely include visual evidence such as screenshots, error dialogs, rendered UI states, and logs, yet repository-level issue localization is evaluated mostly as a text-only task. Existing multimodal SE benchmarks evaluate end-to-end repair, entangling localization with patch synthesis and obscuring whether visual input helped, hurt, or was ignored. We introduce \textbf{MM-IssueLoc}, a controlled benchmark and evaluation protocol for repository-level localization with visual evidence. MM-IssueLoc contains 652 issue-PR instances across 23 languages, with annotations for 7 image categories and 4 relevance levels. It provides file-level and function-level gold labels, paired text-only and with-image evaluation, and VCE-based diagnostics that convert images into structured textual evidence. We evaluate LLM-based and retrieval-based systems, including MM-IssueLoc-VL-Emb as a controlled multimodal retriever. Results show that existing systems remain far from reliable multimodal repository localization: the strongest agent reaches 38.96 file Acc@5 and 22.45 function Acc@10, while the strongest retriever reaches 33.86 function Acc@10. Cross-benchmark comparisons show that high localization scores on text-dominant SWE benchmarks do not transfer cleanly to multimodal issue localization. MM-IssueLoc turns visual evidence into an explicit evaluation variable, enabling future work to test whether systems improve by using visual evidence for localization, rather than by relying on text-only cues or downstream patch-generation effects.

cs.SE

Exploring the Role of Synthetic Data Augmentation in Controllable Human-Centric Video Generation

Controllable human video generation aims to produce realistic videos of humans with explicitly guided motions and appearances,serving as a foundation for digital humans, animation, and embodied AI.However, the scarcity of largescale, diverse, and privacy safe human video datasets poses a major bottleneck, especially for rare identities and complex actions.Synthetic data provides a scalable and controllable alternative,yet its actual contribution to generative modeling remains underexplored due to the persistent Sim2Real gap.In this work,we systematically investigate the impact of synthetic data on controllable human video generation. We propose a diffusion-based framework that enables fine-grained control over appearance and motion while providing a unfied testbed to analyze how synthetic data interacts with real world data during training. Through extensive experiments, we reveal the complementary roles of synthetic and real data and demonstrate possible methods for efficiently selecting synthetic samples to enhance motion realism,temporal consistency,and identity preservation.Our study offers the first comprehensive exploration of synthetic data's role in human-centric video synthesis and provides practical insights for building data-efficient and generalizable generative models.

cs.CV

GraphRAG-IRL: Personalized Recommendation with Graph-Grounded Inverse Reinforcement Learning and LLM Re-ranking

Personalized recommendation requires models that capture sequential user preferences while remaining robust to sparse feedback and semantic ambiguity. Recent work has explored large language models (LLMs) as recommenders and re-rankers, but pure prompt-based ranking often suffers from poor calibration, sensitivity to candidate ordering, and popularity bias. These limitations make LLMs useful semantic reasoners, but unreliable as standalone ranking engines. We present \textbf{GraphRAG-IRL}, a hybrid recommendation framework that combines graph-grounded feature construction, inverse reinforcement learning (IRL), and persona-guided LLM re-ranking. Our method constructs a heterogeneous knowledge graph over items, categories, and concepts, retrieves both individual and community preference context, and uses these signals to train a Maximum Entropy IRL model for calibrated pre-ranking. An LLM is then applied only to a short candidate list, where persona-guided prompts provide complementary semantic judgments that are fused with IRL rankings. Experiments show that GraphRAG-IRL is a strong standalone recommender: IRL-MLP with GraphRAG improves NDCG@10 by 15.7\% on MovieLens and 16.6\% on KuaiRand over supervised baselines. The results also show that IRL and GraphRAG are superadditive, with the combined gain exceeding the sum of their individual improvements. Persona-guided LLM fusion further improves ranking quality, yielding up to 16.8\% NDCG@10 improvement over the IRL-only baseline on MovieLens ml-1m, while score fusion on KuaiRand provides consistent gains of 4--6\% across LLM providers.

cs.IR

TAG: Target-Agnostic Guidance for Stable Object-Centric Inference in Vision-Language-Action Models

Vision--Language--Action (VLA) policies have shown strong progress in mapping language instructions and visual observations to robotic actions, yet their reliability degrades in cluttered scenes with distractors. By analyzing failure cases, we find that many errors do not arise from infeasible motions, but from instance-level grounding failures: the policy often produces a plausible grasp trajectory that lands slightly off-target or even on the wrong object instance. To address this issue, we propose TAG (Target-Agnostic Guidance), a simple inference-time guidance mechanism that explicitly reduces distractor- and appearance-induced bias in VLA policies. Inspired by classifier-free guidance (CFG), TAG contrasts policy predictions under the original observation and an object-erased observation, and uses their difference as a residual steering signal that strengthens the influence of object evidence in the decision process. TAG does not require modifying the policy architecture and can be integrated with existing VLA policies with minimal training and inference changes. We evaluate TAG on standard manipulation benchmarks, including LIBERO, LIBERO-Plus, and VLABench, where it consistently improves robustness under clutter and reduces near-miss and wrong-object executions.

cs.CV

Topology-Driven Transferability Estimation of Medical Foundation Models for Segmentation

The advent of large-scale self-supervised learning (SSL) has produced a vast zoo of medical foundation models. However, selecting optimal medical foundation models for specific segmentation tasks remains a computational bottleneck. Existing Transferability Estimation (TE) metrics, primarily designed for classification, rely on global statistical assumptions and fail to capture the topological complexity essential for dense prediction. We propose a novel Topology-Driven Transferability Estimation framework that evaluates manifold tractability rather than statistical overlap. Our approach introduces three components: (1) Global Representation Topology Divergence (GRTD), utilizing Minimum Spanning Trees to quantify feature-label structural isomorphism; (2) Local Boundary-Aware Topological Consistency (LBTC), which assesses manifold separability specifically at critical anatomical boundaries; and (3) Task-Adaptive Fusion, which dynamically integrates global and local metrics based on the semantic cardinality of the target task. Validated on the large-scale OpenMind benchmark across diverse anatomical targets and SSL foundation models, our approach significantly outperforms state-of-the-art baselines by around 31% relative improvement in the weighted Kendall metric, providing a robust, training-free proxy for efficient model selection without the cost of fine-tuning. The code will be made publicly available upon acceptance.

cs.CV

Stable Language Guidance for Vision-Language-Action Models

Vision-Language-Action (VLA) models have demonstrated impressive capabilities in generalized robotic control; however, they remain notoriously brittle to linguistic perturbations. We identify a critical ``modality collapse'' phenomenon where strong visual priors overwhelm sparse linguistic signals, causing agents to overfit to specific instruction phrasings while ignoring the underlying semantic intent. To address this, we propose Residual Semantic Steering (RSS), a probabilistic framework that disentangles physical affordance from semantic execution. RSS introduces two theoretical innovations: (1) Monte Carlo Syntactic Integration, which approximates the true semantic posterior via dense, LLM-driven distributional expansion, and (2) Residual Affordance Steering, a dual-stream decoding mechanism that explicitly isolates the causal influence of language by subtracting the visual affordance prior. Theoretical analysis suggests that RSS effectively maximizes the mutual information between action and intent while suppressing visual distractors. Empirical results across diverse manipulation benchmarks demonstrate that RSS achieves state-of-the-art robustness, maintaining performance even under adversarial linguistic perturbations. We release our code at https://github.com/Doo-mon/RSS.

cs.RO

Topology-aware Pathological Consistency Matching for Weakly-Paired IHC Virtual Staining

Immunohistochemical (IHC) staining provides crucial molecular characterization of tissue samples and plays an indispensable role in the clinical examination and diagnosis of cancers. However, compared with the commonly used Hematoxylin and Eosin (H&E) staining, IHC staining involves complex procedures and is both time-consuming and expensive, which limits its widespread clinical use. Virtual staining converts H&E images to IHC images, offering a cost-effective alternative to clinical IHC staining. Nevertheless, using adjacent slides as ground truth often results in weakly-paired data with spatial misalignment and local deformations, hindering effective supervised learning. To address these challenges, we propose a novel topology-aware framework for H&E-to-IHC virtual staining. Specifically, we introduce a Topology-aware Consistency Matching (TACM) mechanism that employs graph contrastive learning and topological perturbations to learn robust matching patterns despite spatial misalignments, ensuring structural consistency. Furthermore, we propose a Topology-constrained Pathological Matching (TCPM) mechanism that aligns pathological positive regions based on node importance to enhance pathological consistency. Extensive experiments on two benchmarks across four staining tasks demonstrate that our method outperforms state-of-the-art approaches, achieving superior generation quality with higher clinical relevance.

cs.CV

E0: Enhancing Generalization and Fine-Grained Control in VLA Models via Tweedie Discrete Diffusion

Vision-Language-Action (VLA) models offer a unified framework for robotic manipulation by integrating visual perception, language understanding, and control generation. However, existing VLA systems still struggle to generalize across diverse tasks, scenes, and camera viewpoints, and often produce coarse or unstable actions. We argue that these limitations are closely tied to the structural properties of actions in VLA settings, including the inherent multi-peaked nature of action distributions, the token-based symbolic reasoning of pretrained VLM/VLA backbones, and the effective finite resolution imposed by real-world robotic control. Motivated by these properties, we introduce E0, a tweedie discrete diffusion framework that formulates action generation as iterative denoising over quantized action tokens. By operating in a discrete action space with a principled diffusion process, E0 naturally aligns with token-based reasoning, supports fine-grained yet executable action control, and avoids the distributional mismatch of masking-based discrete diffusion. We further introduce a spherical viewpoint perturbation augmentation to enhance robustness to camera shifts without additional data. Experiments on LIBERO, VLABench, ManiSkill, and a real-world Franka arm demonstrate that E0 achieves state-of-the-art performance across 14 diverse environments, outperforming strong baselines by 10.7% on average.

cs.RO

State and Scene Enhanced Prototypes for Weakly Supervised Open-Vocabulary Object Detection

Open-Vocabulary Object Detection (OVOD) aims to generalize object recognition to novel categories, while Weakly Supervised OVOD (WS-OVOD) extends this by combining box-level annotations with image-level labels. Despite recent progress, two critical challenges persist in this setting. First, existing semantic prototypes, even when enriched by LLMs, are static and limited, failing to capture the rich intra-class visual variations induced by different object states (e.g., a cat's pose). Second, the standard pseudo-box generation introduces a semantic mismatch between visual region proposals (which contain context) and object-centric text embeddings. To tackle these issues, we introduce two complementary prototype enhancement strategies. To capture intra-class variations in appearance and state, we propose the State-Enhanced Semantic Prototypes (SESP), which generates state-aware textual descriptions (e.g., "a sleeping cat") to capture diverse object appearances, yielding more discriminative prototypes. Building on this, we further introduce Scene-Augmented Pseudo Prototypes (SAPP) to address the semantic mismatch. SAPP incorporates contextual semantics (e.g., "cat lying on sofa") and utilizes a soft alignment mechanism to promote contextually consistent visual-textual representations. By integrating SESP and SAPP, our method effectively enhances both the richness of semantic prototypes and the visual-textual alignment, achieving notable improvements.

cs.CV

MGI: Multimodal Contrastive pre-training of Genomic and Medical Imaging

Medicine is inherently a multimodal discipline. Medical images can reflect the pathological changes of cancer and tumors, while the expression of specific genes can influence their morphological characteristics. However, most deep learning models employed for these medical tasks are unimodal, making predictions using either image data or genomic data exclusively. In this paper, we propose a multimodal pre-training framework that jointly incorporates genomics and medical images for downstream tasks. To address the issues of high computational complexity and difficulty in capturing long-range dependencies in genes sequence modeling with MLP or Transformer architectures, we utilize Mamba to model these long genomic sequences. We aligns medical images and genes using a self-supervised contrastive learning approach which combines the Mamba as a genetic encoder and the Vision Transformer (ViT) as a medical image encoder. We pre-trained on the TCGA dataset using paired gene expression data and imaging data, and fine-tuned it for downstream tumor segmentation tasks. The results show that our model outperformed a wide range of related methods.

cs.CV

Towards Collective Intelligence: Uncertainty-aware SAM Adaptation for Ambiguous Medical Image Segmentation

Collective intelligence from multiple medical experts consistently surpasses individual expertise in clinical diagnosis, particularly for ambiguous medical image segmentation tasks involving unclear tissue boundaries or pathological variations. The Segment Anything Model (SAM), a powerful vision foundation model originally designed for natural image segmentation, has shown remarkable potential when adapted to medical image segmentation tasks. However, existing SAM adaptation methods follow a single-expert paradigm, developing models based on individual expert annotations to predict deterministic masks. These methods systematically ignore the inherent uncertainty and variability in expert annotations, which fundamentally contradicts clinical practice, where multiple specialists provide different yet equally valid interpretations that collectively enhance diagnostic confidence. We propose an Uncertainty-aware Adapter, the first SAM adaptation framework designed to transition from single expert mindset to collective intelligence representation. Our approach integrates stochastic uncertainty sampling from a Conditional Variational Autoencoder into the adapters, enabling diverse prediction generation that captures expert knowledge distributions rather than individual expert annotations. We employ a novel position-conditioned control mechanism to integrate multi-expert knowledge, ensuring that the output distribution closely aligns with the multi-annotation distribution. Comprehensive evaluations across seven medical segmentation benchmarks have demonstrated that our collective intelligence-based adaptation achieves superior performance while maintaining computational efficiency, establishing a new adaptation framework for reliable clinical implementation.

eess.IV

Assisted Learning for Organizations with Limited Imbalanced Data

In the era of big data, many big organizations are integrating machine learning into their work pipelines to facilitate data analysis. However, the performance of their trained models is often restricted by limited and imbalanced data available to them. In this work, we develop an assisted learning framework for assisting organizations to improve their learning performance. The organizations have sufficient computation resources but are subject to stringent data-sharing and collaboration policies. Their limited imbalanced data often cause biased inference and sub-optimal decision-making. In assisted learning, an organizational learner purchases assistance service from an external service provider and aims to enhance its model performance within only a few assistance rounds. We develop effective stochastic training algorithms for both assisted deep learning and assisted reinforcement learning. Different from existing distributed algorithms that need to frequently transmit gradients or models, our framework allows the learner to only occasionally share information with the service provider, but still obtain a model that achieves near-oracle performance as if all the data were centralized.

cs.LG

Pattern formation in a predator-prey model with Allee effect and hyperbolic mortality on networked and non-networked environments

With the development of network science, Turing pattern has been proven to be formed in discrete media such as complex networks, opening up the possibility of exploring it as a generation mechanism in the context of biology, chemistry, and physics. Turing instability in the predator-prey system has been widely studied in recent years. We hope to use the predator-prey interaction relationship in biological populations to explain the influence of network topology on pattern formation. In this paper, we establish a predator-prey model with weak Allee effect, analyze and verify the Turing instability conditions on the large ER (Erdös-Rényi) random network with the help of Turing stability theory and numerical experiments, and obtain the Turing instability region. The results indicate that diffusion plays a decisive role in the generation of spatial patterns, whether in continuous or discrete media. For spatiotemporal patterns, different initial values can also bring about changes in the pattern. When we analyze the model based on the network framework, we find that the average degree of the network has an important impact on the model, and different average degrees will lead to changes in the distribution pattern of the population.

q-bio.PE

Pattern formation and bifurcation analysis of delay induced fractional-order epidemic spreading on networks

The spontaneous emergence of ordered structures, known as Turing patterns, in complex networks is a phenomenon that holds potential applications across diverse scientific fields, including biology, chemistry, and physics. Here, we present a novel delayed fractional-order susceptible-infected-recovered-susceptible (SIRS) reaction-diffusion model functioning on a network, which is typically used to simulate disease transmission but can also model rumor propagation in social contexts. Our theoretical analysis establishes the Turing instability resulting from delay, and we support our conclusions through numerical experiments. We identify the unique impacts of delay, average network degree, and diffusion rate on pattern formation. The primary outcomes of our study are: (i) Delays cause system instability, mainly evidenced by periodic temporal fluctuations; (ii) The average network degree produces periodic oscillatory states in uneven spatial distributions; (iii) The combined influence of diffusion rate and delay results in irregular oscillations in both time and space. However, we also find that fractional-order can suppress the formation of spatiotemporal patterns. These findings are crucial for comprehending the impact of network structure on the dynamics of fractional-order systems.

physics.soc-ph

Enhancing In-Context Learning with Answer Feedback for Multi-Span Question Answering

Whereas the recent emergence of large language models (LLMs) like ChatGPT has exhibited impressive general performance, it still has a large gap with fully-supervised models on specific tasks such as multi-span question answering. Previous researches found that in-context learning is an effective approach to exploiting LLM, by using a few task-related labeled data as demonstration examples to construct a few-shot prompt for answering new questions. A popular implementation is to concatenate a few questions and their correct answers through simple templates, informing LLM of the desired output. In this paper, we propose a novel way of employing labeled data such that it also informs LLM of some undesired output, by extending demonstration examples with feedback about answers predicted by an off-the-shelf model, e.g., correct, incorrect, or incomplete. Experiments on three multi-span question answering datasets as well as a keyphrase extraction dataset show that our new prompting strategy consistently improves LLM's in-context learning performance.

cs.CL

Pattern formation of parasite-host model induced by fear effect

In this paper, based on the epidemiological microparasite model, a parasite-host model is established by considering the fear effect of susceptible individuals on infectors. We explored the pattern formation with the help of numerical simulation, and analyzed the effects of fear effect, infected host mortality, population diffusion rate and reducing reproduction ability of infected hosts on population activities in different degrees. Theoretically, we give the general conditions for the stability of the model under non-diffusion and considering the Turing instability caused by diffusion. Our results indicate how fear affects the distribution of the uninfected and infected hosts in the habitat and quantify the influence of the fear factor on the spatiotemporal pattern of the population. In addition, we analyze the influence of natural death rate, reproduction ability of infected hosts, and diffusion level of uninfected (infected) hosts on the spatiotemporal pattern, respectively. The results present that the growth of pattern induced by intensified fear effect follows the certain rule: cold spots $\rightarrow$ cold spots-stripes $\rightarrow$ cold stripes $\rightarrow$ hot stripes $\rightarrow$ hot spots-stripes $\rightarrow$ hot spots. Interestingly, the natural mortality and fear effect take the opposite effect on the growth order of the pattern. From the perspective of biological significance, we find that the degree of fear effect can reshape the distribution of population to meet the previous rule.

q-bio.PE

Clues Before Answers: Generation-Enhanced Multiple-Choice QA

A trending paradigm for multiple-choice question answering (MCQA) is using a text-to-text framework. By unifying data in different tasks into a single text-to-text format, it trains a generative encoder-decoder model which is both powerful and universal. However, a side effect of twisting a generation target to fit the classification nature of MCQA is the under-utilization of the decoder and the knowledge that can be decoded. To exploit the generation capability and underlying knowledge of a pre-trained encoder-decoder model, in this paper, we propose a generation-enhanced MCQA model named GenMC. It generates a clue from the question and then leverages the clue to enhance a reader for MCQA. It outperforms text-to-text models on multiple MCQA datasets.

cs.CL

Model Linkage Selection for Cooperative Learning

We consider a distributed learning setting where each agent/learner holds a specific parametric model and data source. The goal is to integrate information across a set of learners to enhance the prediction accuracy of a given learner. A natural way to integrate information is to build a joint model across a group of learners that shares common parameters of interest. However, the underlying parameter sharing patterns across a set of learners may not be a priori known. Misspecifying the parameter sharing patterns or the parametric model for each learner often yields a biased estimation and degrades the prediction accuracy. We propose a general method to integrate information across a set of learners that is robust against misspecifications of both models and parameter sharing patterns. The main crux is to sequentially incorporate additional learners that can enhance the prediction accuracy of an existing joint model based on user-specified parameter sharing patterns across a set of learners. Theoretically, we show that the proposed method can data-adaptively select the most suitable way of parameter sharing and thus enhance the predictive performance of any particular learner of interest. Extensive numerical studies show the promising performance of the proposed method.

stat.ME