arXiv subjects

Jie M. Zhang

Publications and source records attributed to Jie M. Zhang.

At least 55 records · Page 3Linked to original sources

arXiv2026

Promptware Engineering: Software Engineering for Prompt-Enabled Systems

Large Language Models (LLMs) are increasingly integrated into software applications, giving rise to a broad class of prompt-enabled systems, in which prompts serve as the primary 'programming' interface for guiding system behavior. Building on this trend, a new software paradigm, promptware, has emerged, which treats natural language prompts as first-class software artifacts for interacting with LLMs. Unlike traditional software, which relies on formal programming languages and deterministic runtime environments, promptware is based on ambiguous, unstructured, and context-dependent natural language and operates on LLMs as runtime environments, which are probabilistic and non-deterministic. These fundamental differences introduce unique challenges in prompt development. In practice, prompt development remains largely ad hoc and relies heavily on time-consuming trial-and-error, a challenge we term the promptware crisis. To address this, we propose promptware engineering, a new methodology that adapts established Software Engineering (SE) principles to prompt development. Drawing on decades of success in traditional SE, we envision a systematic framework encompassing prompt requirements engineering, design, implementation, testing, debugging, evolution, deployment, and monitoring. Our framework re-contextualizes emerging prompt-related challenges within the SE lifecycle, providing principled guidance beyond ad-hoc practices. Without the SE discipline, prompt development is likely to remain mired in trial-and-error. This paper outlines a comprehensive roadmap for promptware engineering, identifying key research directions and offering actionable insights to advance the development of prompt-enabled systems.

cs.SE↗

arXiv2026

A Study of Library Usage in Agent-Authored Pull Requests

Coding agents are becoming increasingly capable of completing end-to-end software engineering workflows that previously required a human developer, including raising pull requests (PRs) to propose their changes. However, we still know little about how these agents use libraries when generating code, a core part of real-world software development. To fill this gap, we study 26,760 agent-authored PRs from the AIDev dataset to examine three questions: how often do agents import libraries, how often do they introduce new dependencies (and with what versioning), and which specific libraries do they choose? We find that agents often import libraries (29.5% of PRs) but rarely add new dependencies (1.3% of PRs); and when they do, they follow strong versioning practices (75.0% specify a version), an improvement on direct LLM usage where versions are rarely mentioned. Generally, agents draw from a surprisingly diverse set of external libraries, contrasting with the limited "library preferences" seen in prior non-agentic LLM studies. Our findings offer an early empirical view on how AI coding agents interact with today's software ecosystems.

cs.SE↗

arXiv2026

Analyzing Message-Code Inconsistency in AI Coding Agent-Authored Pull Requests

Pull request (PR) descriptions generated by AI coding agents are the primary channel for communicating code changes to human reviewers. However, the alignment between these messages and the actual changes remains unexplored, raising concerns about the trustworthiness of AI agents. To fill this gap, we analyzed 23,247 agentic PRs across five agents using PR message-code inconsistency (PR-MCI). We contributed 974 manually annotated PRs, found 406 PRs (1.7%) exhibited high PR-MCI, and identified eight PR-MCI types, revealing that "descriptions claim unimplemented changes" was the most common issue (45.4%). Statistical tests confirmed that high-MCI PRs had 51.7% lower acceptance rates (28.3% vs. 80.0%) and took 3.5 times longer to merge (55.8 vs. 16.0 hours). Our findings suggest that unreliable PR descriptions undermine trust in AI agents, highlighting the need for PR-MCI verification mechanisms and improved PR generation to enable trustworthy human-AI collaboration.

cs.SE↗

arXiv2026

A Comprehensive Study on Large Language Models for Mutation Testing

Large Language Models (LLMs) have recently been used to generate mutants in both research work and in industrial practice. However, there has been no comprehensive empirical study of their performance for this increasingly important LLM-based Software Engineering application. To address this, we conduct a comprehensive empirical study evaluating BugFarm and LLMorpheus (the two state-of-the-art LLM-based approaches), alongside seven LLMs using our newly designed prompt, including both leading open- and closed-source models, on 851 real bugs from two Java real-world bug benchmarks. Our results reveal that, compared to existing rule-based approaches, LLMs generate more diverse mutants, that are behaviorally closer to real bugs and, most importantly, with 111.29% higher fault detection. That is, 87.98% (for LLMs) vs. 41.64% (for rule-based); an increase of 46.34 percentage points. Nevertheless, our results also reveal that these impressive results for improved effectiveness come at a cost: the LLM-generated mutants have worse non-compilability, duplication, and equivalent mutant rates by 26.60, 10.14, and 3.51 percentage points, respectively. These findings are immediately actionable for both research and practice. They allow practitioners to have greater confidence in deploying LLM-based mutation, while researchers now have a baseline for the state-of-the-art, with which they can research techniques to further improve effectiveness and reduce cost.

cs.SE↗

arXiv2026

FairMedQA: Benchmarking Bias in Large Language Models for Medical Question Answering

Large language models (LLMs) are approaching expert-level performance in medical question answering (QA), demonstrating strong potential to improve public healthcare. However, underlying biases related to sensitive attributes such as sex and race pose life-critical risks. The extent to which such sensitive attributes affect diagnosis remains an open question and requires comprehensive empirical investigation. Additionally, even the latest Counterfactual Patient Variations (CPV) benchmark can hardly distinguish the bias levels of different LLMs. To further explore these dynamics, we propose a new benchmark, FairMedQA, and benchmark 12 representative LLMs. FairMedQA contains 4,806 counterfactual question pairs constructed from 801 clinical vignettes. Our results reveal substantial accuracy disparity ranging from 3 to 19 percentage points across sensitive demographic groups. Notably, FairMedQA exposes biases that are at least 12 percentage points larger than those identified by the latest CPV benchmark, presenting superior benchmarking sensitivity. Our results underscore an urgent need for targeted debiasing techniques and more rigorous, identity-aware validation protocols before LLMs can be safely integrated into practical clinical decision-support systems.

cs.AI↗

arXiv2025

Fairness Is Not Just Ethical: Performance Trade-Off via Data Correlation Tuning to Mitigate Bias in ML Software

Traditional software fairness research typically emphasizes ethical and social imperatives, neglecting that fairness fundamentally represents a core software quality issue arising directly from performance disparities across sensitive user groups. Recognizing fairness explicitly as a software quality dimension yields practical benefits beyond ethical considerations, notably improved predictive performance for unprivileged groups, enhanced out-of-distribution generalization, and increased geographic transferability in real-world deployments. Nevertheless, existing bias mitigation methods face a critical dilemma: while pre-processing methods offer broad applicability across model types, they generally fall short in effectiveness compared to post-processing techniques. To overcome this challenge, we propose Correlation Tuning (CoT), a novel pre-processing approach designed to mitigate bias by adjusting data correlations. Specifically, CoT introduces the Phi-coefficient, an intuitive correlation measure, to systematically quantify correlation between sensitive attributes and labels, and employs multi-objective optimization to address the proxy biases. Extensive evaluations demonstrate that CoT increases the true positive rate of unprivileged groups by an average of 17.5% and reduces three key bias metrics, including statistical parity difference (SPD), average odds difference (AOD), and equal opportunity difference (EOD), by more than 50% on average. CoT outperforms state-of-the-art methods by three and ten percentage points in single attribute and multiple attributes scenarios, respectively. We will publicly release our experimental results and source code to facilitate future research.

cs.SE↗

arXiv2025

Large Language Models Miss the Multi-Agent Mark

Recent interest in Multi-Agent Systems of Large Language Models (MAS LLMs) has led to an increase in frameworks leveraging multiple LLMs to tackle complex tasks. However, much of this literature appropriates the terminology of MAS without engaging with its foundational principles. In this position paper, we highlight critical discrepancies between MAS theory and current MAS LLMs implementations, focusing on four key areas: the social aspect of agency, environment design, coordination and communication protocols, and measuring emergent behaviours. Our position is that many MAS LLMs lack multi-agent characteristics such as autonomy, social interaction, and structured environments, and often rely on oversimplified, LLM-centric architectures. The field may slow down and lose traction by revisiting problems the MAS literature has already addressed. Therefore, we systematically analyse this issue and outline associated research opportunities; we advocate for better integrating established MAS concepts and more precise terminology to avoid mischaracterisation and missed opportunities.

cs.MA↗

arXiv2025

DSCodeBench: A Realistic Benchmark for Data Science Code Generation

We introduce DSCodeBench, a new benchmark designed to evaluate large language models (LLMs) on complicated and realistic data science code generation tasks. DSCodeBench consists of 1,000 carefully constructed problems sourced from realistic problems from GitHub across ten widely used Python data science libraries. DSCodeBench offers a more challenging and representative testbed, more complex code solutions, more comprehensive data science libraries, clearer and better structured problem descriptions, and stronger test suites. To construct the DSCodeBench, we develop a robust pipeline that combines task scope selection, code construction, test case generation, and problem description synthesis. The process is paired with rigorous manual editing to ensure alignment and enhance the reliability of the evaluation. Experimental result shows that DSCodeBench exhibits robust scaling behavior, where larger models systematically outperform smaller ones, validating its ability to distinguish model capabilities. The best LLM we test, GPT-4o, has a pass@1 of 0.392, indicating that LLMs still have a large room to improve for realistic data science code generation tasks. We believe DSCodeBench will serve as a rigorous and trustworthy foundation for advancing LLM-based data science programming.

cs.SE↗

arXiv2025

Nexus: Execution-Grounded Multi-Agent Test Oracle Synthesis

Test oracle generation in non-regression testing is a longstanding challenge in software engineering, where the goal is to produce oracles that can accurately determine whether a function under test (FUT) behaves as intended for a given input. In this paper, we introduce Nexus, a novel multi-agent framework to address this challenge. Nexus generates test oracles by leveraging a diverse set of specialized agents that synthesize test oracles through a structured process of deliberation, validation, and iterative self-refinement. During the deliberation phase, a panel of four specialist agents, each embodying a distinct testing philosophy, collaboratively critiques and refines an initial set of test oracles. Then, in the validation phase, Nexus generates a plausible candidate implementation of the FUT and executes the proposed oracles against it in a secure sandbox. For any oracle that fails this execution-based check, Nexus activates an automated selfrefinement loop, using the specific runtime error to debug and correct the oracle before re-validation. Our extensive evaluation on seven diverse benchmarks demonstrates that Nexus consistently and substantially outperforms state-of-theart baselines. For instance, Nexus improves the test-level oracle accuracy on the LiveCodeBench from 46.30% to 57.73% for GPT-4.1-Mini. The improved accuracy also significantly enhances downstream tasks: the bug detection rate of GPT4.1-Mini generated test oracles on HumanEval increases from 90.91% to 95.45% for Nexus compared to baselines, and the success rate of automated program repair improves from 35.23% to 69.32%.

cs.SE↗

arXiv2025

SWE-Effi: Re-Evaluating Software AI Agent System Effectiveness Under Resource Constraints

The advancement of large language models (LLMs) and code agents has demonstrated significant potential to assist software engineering (SWE) tasks, such as autonomous issue resolution and feature addition. Existing AI for software engineering leaderboards (e.g., SWE-bench) focus solely on solution accuracy, ignoring the crucial factor of effectiveness in a resource-constrained world. This is a universal problem that also exists beyond software engineering tasks: any AI system should be more than correct - it must also be cost-effective. To address this gap, we introduce SWE-Effi, a set of new metrics to re-evaluate AI systems in terms of holistic effectiveness scores. We define effectiveness as the balance between the accuracy of outcome (e.g., issue resolve rate) and the resources consumed (e.g., token and time). In this paper, we specifically focus on the software engineering scenario by re-ranking popular AI systems for issue resolution on a subset of the SWE-bench benchmark using our new multi-dimensional metrics. We found that AI system's effectiveness depends not just on the scaffold itself, but on how well it integrates with the base model, which is key to achieving strong performance in a resource-efficient manner. We also identified systematic challenges such as the "token snowball" effect and, more significantly, a pattern of "expensive failures". In these cases, agents consume excessive resources while stuck on unsolvable tasks - an issue that not only limits practical deployment but also drives up the cost of failed rollouts during RL training. Lastly, we observed a clear trade-off between effectiveness under the token budget and effectiveness under the time budget, which plays a crucial role in managing project budgets and enabling scalable reinforcement learning, where fast responses are essential.

cs.SE↗

arXiv2025

Fairness Aware Reinforcement Learning via Proximal Policy Optimization

Fairness in multi-agent systems (MAS) focuses on equitable reward distribution among agents in scenarios involving sensitive attributes such as race, gender, or socioeconomic status. This paper introduces fairness in Proximal Policy Optimization (PPO) with a penalty term derived from a fairness definition such as demographic parity, counterfactual fairness, or conditional statistical parity. The proposed method, which we call Fair-PPO, balances reward maximisation with fairness by integrating two penalty components: a retrospective component that minimises disparities in past outcomes and a prospective component that ensures fairness in future decision-making. We evaluate our approach in two games: the Allelopathic Harvest, a cooperative and competitive MAS focused on resource collection, where some agents possess a sensitive attribute, and HospitalSim, a hospital simulation, in which agents coordinate the operations of hospital patients with different mobility and priority needs. Experiments show that Fair-PPO achieves fairer policies than PPO across the fairness metrics and, through the retrospective and prospective penalty components, reveals a wide spectrum of strategies to improve fairness; at the same time, its performance pairs with that of state-of-the-art fair reinforcement-learning algorithms. Fairness comes at the cost of reduced efficiency, but does not compromise equality among the overall population (Gini index). These findings underscore the potential of Fair-PPO to address fairness challenges in MAS.

cs.MA↗

arXiv2025

Software Fairness Dilemma: Is Bias Mitigation a Zero-Sum Game?

Fairness is a critical requirement for Machine Learning (ML) software, driving the development of numerous bias mitigation methods. Previous research has identified a leveling-down effect in bias mitigation for computer vision and natural language processing tasks, where fairness is achieved by lowering performance for all groups without benefiting the unprivileged group. However, it remains unclear whether this effect applies to bias mitigation for tabular data tasks, a key area in fairness research with significant real-world applications. This study evaluates eight bias mitigation methods for tabular data, including both widely used and cutting-edge approaches, across 44 tasks using five real-world datasets and four common ML models. Contrary to earlier findings, our results show that these methods operate in a zero-sum fashion, where improvements for unprivileged groups are related to reduced benefits for traditionally privileged groups. However, previous research indicates that the perception of a zero-sum trade-off might complicate the broader adoption of fairness policies. To explore alternatives, we investigate an approach that applies the state-of-the-art bias mitigation method solely to unprivileged groups, showing potential to enhance benefits of unprivileged groups without negatively affecting privileged groups or overall ML performance. Our study highlights potential pathways for achieving fairness improvements without zero-sum trade-offs, which could help advance the adoption of bias mitigation methods.

cs.LG↗

arXiv2025

Benchmarking LLMs for Unit Test Generation from Real-World Functions

Recently, large language models (LLMs) have shown great promise in automating unit test generation, significantly reducing the manual effort required by developers. To effectively evaluate the capabilities of LLMs in this domain, it is crucial to have a well-designed benchmark that accurately reflects real-world scenarios and mitigates common pitfalls. Existing LLM test generation benchmarks are limited by two critical drawbacks: data contamination and structurally simple function code. As a result, we often cannot rely on the validity of scientific conclusions drawn from empirical studies using these limited benchmarks. The empirical evidence presented may be biased due to contamination and may fail to generalize beyond toy programs due to structural simplicity. To address these problems, we introduce ULT (UnLeakedTestbench), a new benchmark specifically designed for function-level unit test generation from real-world Python functions. ULT is constructed through a multi-stage curation process that ensures high cyclomatic complexity and mitigates test case contamination. With 3,909 carefully selected function-level tasks, ULT provides a more realistic and challenging evaluation of LLMs' test generation capabilities. We also provide PLT (PreLeakedTestbench), a pair benchmark of ULT with leaked tests designed to enable a controlled analysis of memorization versus reasoning in test generation. Our evaluation results demonstrate that ULT is significantly more challenging. For example, test cases generated by LLMs only achieve 41.32\%, 45.10\%, 30.22\%, and 40.21\% for accuracy, statement coverage, branch coverage, and mutation score on average for all LLMs, respectively. These results are substantially lower than the corresponding metrics on TestEval (91.79\%, 92.18\%, 82.04\%, and 49.69\%) and PLT (47.07\%, 55.13\%, 40.07\%, and 50.80\%).

cs.SE↗

arXiv2025

YATE: The Role of Test Repair in LLM-Based Unit Test Generation

Recent advances in automated test generation utilises language models to produce unit tests. While effective, language models tend to generate many incorrect tests with respect to both syntax and semantics. Although such incorrect tests can be easily detected and discarded, they constitute a "missed opportunity" -- if fixed, they are often valuable as they directly add testing value (they effectively target the underlying program logic to be tested) and indirectly form good seeds for generating additional tests. To this end, we propose a simple technique for repairing some of these incorrect tests through a combination of rule-based static analysis and re-prompting. We evaluate this simple approach, named YATE, on a set of 6 open-source projects and show that it can effectively produce tests that cover on average 32.06% more lines and kill 21.77% more mutants than a plain LLM-based method. We also compare YATE with four other LLM-based methods, namely HITS, SYMPROMPT, TESTSPARK and COVERUP and show that it produces tests that cover substantially more code. YATE achieves 22% higher line coverage, 20% higher branch coverage and kill 20% more mutants at a comparable cost (number of calls to LLMs).

cs.SE↗

arXiv2025

EffiCoder: Enhancing Code Generation in Large Language Models through Efficiency-Aware Fine-tuning

As large language models (LLMs) play an increasingly important role in code generation, enhancing both correctness and efficiency has become crucial. Current methods primarily focus on correctness, often overlooking efficiency. To address this gap, we introduce EffiCoder to improve both aspects by fine-tuning LLMs on a high-quality dataset comprising correct and efficient code samples. Our methodology involves leveraging multiple LLMs to generate diverse candidate code solutions for various tasks across different programming languages. We then evaluate these solutions by measuring their execution time and memory usage through local execution. The code solution with the lowest execution time and memory consumption is selected as the final output for each task. Experimental results demonstrate significant improvements when fine-tuning with Effi-Instruct. For instance, Qwen2.5-Coder-7B-Instruct's pass@1 score increases from 44.8\% to 57.7\%, while the average execution time for correct tasks decreases by 48.4\%. EffiCoder offers a scalable and effective solution for advancing AI-driven code generation, benefiting software development and computational problem-solving. The source code of Effi-Code was released at https://github.com/huangd1999/EffiCoder.

cs.CL↗

arXiv2025

LLM-Powered Test Case Generation for Detecting Bugs in Plausible Programs

Detecting tricky bugs in plausible programs, those that pass existing test suites yet still contain bugs, remains a significant challenge in software testing. To address this problem, we propose TrickCatcher, an LLM-powered approach to generating test cases for uncovering bugs in plausible programs. TrickCatcher operates in three stages: First, it uses an LLM to generate program variants based on the program under test (PUT) and its specification. Second, it employs an LLM to construct an input generator from the specification for producing test inputs. Finally, these inputs are executed on both the PUT and its program variants to detect inconsistencies in their outputs. We evaluate TrickCatcher on two datasets, TrickyBugs and EvalPlus, which include 366 human-written and 151 AI-generated plausible programs with tricky bugs. TrickCatcher achieves recall, precision, and F1 scores that are 1.80x, 2.65x, and 1.66x those of the state-of-the-art baselines, respectively. Code and data used are available at https://github.com/RinCloud/TrickCatcher.

cs.SE↗

arXiv2025

Personality-Guided Code Generation Using Large Language Models

Code generation, the automatic creation of source code from natural language descriptions, has garnered significant attention due to its potential to streamline software development. Inspired by research that links task-personality alignment with improved development outcomes, we conduct an empirical study on personality-guided code generation using large language models (LLMs). Specifically, we investigate how emulating personality traits appropriate to the coding tasks affects LLM performance. We extensively evaluate this approach using seven widely adopted LLMs across four representative datasets. Our results show that personality guidance significantly enhances code generation accuracy, with improved pass rates in 23 out of 28 LLM-dataset combinations. Notably, in 11 cases, the improvement exceeds 5%, and in 5 instances, it surpasses 10%, with the highest gain reaching 12.9%. Additionally, personality guidance can be easily integrated with other prompting strategies to further boost performance. We open-source our code and data at https://github.com/IanWalls/Persona-Code.

cs.SE↗

arXiv2025

EffiBench: Benchmarking the Efficiency of Automatically Generated Code

Code generation models have increasingly become integral to aiding software development. Although current research has thoroughly examined the correctness of the code produced by code generation models, a vital aspect that plays a pivotal role in green computing and sustainability efforts has often been neglected. This paper presents EffiBench, a benchmark with 1,000 efficiency-critical coding problems to assess the efficiency of code generated by code generation models. EffiBench contains a diverse set of LeetCode coding problems. Each problem is paired with an executable human-written canonical solution, which obtains the SOTA efficiency on the LeetCode solution leaderboard. With EffiBench, we empirically examine the ability of 42 large language models (35 open-source and 7 closed-source) to generate efficient code. Our evaluation results demonstrate that the efficiency of the code generated by LLMs is generally worse than the efficiency of human-written canonical solutions. For example, GPT-4 generated code has an average \textbf{3.12} times execution time that of the human-written canonical solutions. In the most extreme cases, the execution time and total memory usage of GPT-4 generated code are \textbf{13.89} and \textbf{43.92} times that of the canonical solutions. The source code of EffiBench is released on https://github.com/huangd1999/EffiBench. We also provide the LeaderBoard at https://huggingface.co/spaces/EffiBench/effibench-leaderboard.

cs.SE↗