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Jihoon Shin

Publications and source records attributed to Jihoon Shin.

4 recordsLinked to original sources

Evaluating Generalization Mechanisms in Autonomous Cyber Attack Agents

Autonomous offensive agents often fail to transfer beyond the networks on which they are trained. We isolate a minimal but fundamental shift -- unseen host/subnet IP reassignment in an otherwise fixed enterprise scenario -- and evaluate attacker generalization in the NetSecGame environment. Agents are trained on five IP-range variants and tested on a sixth unseen variant; only the meta-learning agent may adapt at test time. We compare three agent families (traditional RL, adaptation agents, and LLM-based agents) and use action-distribution-based behavioral/XAI analyses to localize failure modes. Some adaptation methods show partial transfer but significant degradation under unseen reassignment, indicating that even address-space changes can break long-horizon attack policies. Under our evaluation protocol and agent-specific assumptions, prompt-driven pretrained LLM agents achieve the highest success on the held-out reassignment, but at the cost of increased inference-time compute, reduced transparency, and practical failure modes such as repetition/invalid-action loops.

cs.CR

Kinetic Trans-assembly of DNA Nanostructures

The central dogma of molecular biology is the principal framework for understanding how nucleic acid information is propagated and used by living systems to create complex biomolecules. Here, by integrating the structural and dynamic paradigms of DNA nanotechnology, we present a rationally designed synthetic platform which functions in an analogous manner to create complex DNA nanostructures. Starting from one type of DNA nanostructure, DNA strand displacement circuits were designed to interact and pass along the information encoded in the initial structure to mediate the self-assembly of a different type of structure, the final output structure depending on the type of circuit triggered. Using this concept of a DNA structure "trans-assembling" a different DNA structure through non-local strand displacement circuitry, four different schemes were implemented. Specifically, 1D ladder and 2D double-crossover (DX) lattices were designed to kinetically trigger DNA circuits to activate polymerization of either ring structures or another type of DX lattice under enzyme-free, isothermal conditions. In each scheme, the desired multilayer reaction pathway was activated, among multiple possible pathways, ultimately leading to the downstream self-assembly of the correct output structure.

physics.bio-ph

Artificial DNA Lattice Fabrication by Non-Complementarity and Geometrical Incompatibility

Fabrication of DNA nanostructures primarily follows two fundamental rules. First, DNA oligonucleotides mutually combine by Watson-Crick base pairing rules between complementary base sequences. Second, the geometrical compatibility of the DNA oligonucleotide must match for lattices to form. Here we present a fabrication scheme of DNA nanostructures with non-complementary and/or geometrically incompatible DNA oligonucleotides, which contradicts conventional DNA structure creation rules. Quantitative analyses of DNA lattice sizes were carried out to verify the unfavorable binding occurrences which correspond to errors in algorithmic self-assembly. Further studies of these types of bindings may shed more light on the exact mechanisms at work in the self-assembly of DNA nanostructures.

cond-mat.mes-hall

Intrinsic DNA Curvature of Double-Crossover Tiles

A theoretical model which takes into account the structural distortion of double-crossover DNA tiles has been studied to investigate its effect on lattice formation sizes. It has been found that a single vector appropriately describes the curvature of the tiles, of which a higher magnitude hinders lattice growth. In conjunction with these calculations, normal mode analysis reveals that tiles with relative higher frequencies have an analogous effect. All the theoretical results are shown to be in good agreement with experimental data.

cond-mat.mes-hall