arXiv subjects

Jiliu Zhou

Publications and source records attributed to Jiliu Zhou.

At least 37 records · Page 2Linked to original sources

arXiv2021

Unsupervised PET Reconstruction from a Bayesian Perspective

Positron emission tomography (PET) reconstruction has become an ill-posed inverse problem due to low-count projection data, and a robust algorithm is urgently required to improve imaging quality. Recently, the deep image prior (DIP) has drawn much attention and has been successfully applied in several image restoration tasks, such as denoising and inpainting, since it does not need any labels (reference image). However, overfitting is a vital defect of this framework. Hence, many methods have been proposed to mitigate this problem, and DeepRED is a typical representation that combines DIP and regularization by denoising (RED). In this article, we leverage DeepRED from a Bayesian perspective to reconstruct PET images from a single corrupted sinogram without any supervised or auxiliary information. In contrast to the conventional denoisers customarily used in RED, a DnCNN-like denoiser, which can add an adaptive constraint to DIP and facilitate the computation of derivation, is employed. Moreover, to further enhance the regularization, Gaussian noise is injected into the gradient updates, deriving a Markov chain Monte Carlo (MCMC) sampler. Experimental studies on brain and whole-body datasets demonstrate that our proposed method can achieve better performance in terms of qualitative and quantitative results compared to several classic and state-of-the-art methods.

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arXiv2021

One Network to Solve Them All: A Sequential Multi-Task Joint Learning Network Framework for MR Imaging Pipeline

Magnetic resonance imaging (MRI) acquisition, reconstruction, and segmentation are usually processed independently in the conventional practice of MRI workflow. It is easy to notice that there are significant relevances among these tasks and this procedure artificially cuts off these potential connections, which may lead to losing clinically important information for the final diagnosis. To involve these potential relations for further performance improvement, a sequential multi-task joint learning network model is proposed to train a combined end-to-end pipeline in a differentiable way, aiming at exploring the mutual influence among those tasks simultaneously. Our design consists of three cascaded modules: 1) deep sampling pattern learning module optimizes the $k$-space sampling pattern with predetermined sampling rate; 2) deep reconstruction module is dedicated to reconstructing MR images from the undersampled data using the learned sampling pattern; 3) deep segmentation module encodes MR images reconstructed from the previous module to segment the interested tissues. The proposed model retrieves the latently interactive and cyclic relations among those tasks, from which each task will be mutually beneficial. The proposed framework is verified on MRB dataset, which achieves superior performance on other SOTA methods in terms of both reconstruction and segmentation.

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arXiv2021

Deep Learning based Multi-modal Computing with Feature Disentanglement for MRI Image Synthesis

Purpose: Different Magnetic resonance imaging (MRI) modalities of the same anatomical structure are required to present different pathological information from the physical level for diagnostic needs. However, it is often difficult to obtain full-sequence MRI images of patients owing to limitations such as time consumption and high cost. The purpose of this work is to develop an algorithm for target MRI sequences prediction with high accuracy, and provide more information for clinical diagnosis. Methods: We propose a deep learning based multi-modal computing model for MRI synthesis with feature disentanglement strategy. To take full advantage of the complementary information provided by different modalities, multi-modal MRI sequences are utilized as input. Notably, the proposed approach decomposes each input modality into modality-invariant space with shared information and modality-specific space with specific information, so that features are extracted separately to effectively process the input data. Subsequently, both of them are fused through the adaptive instance normalization (AdaIN) layer in the decoder. In addition, to address the lack of specific information of the target modality in the test phase, a local adaptive fusion (LAF) module is adopted to generate a modality-like pseudo-target with specific information similar to the ground truth. Results: To evaluate the synthesis performance, we verify our method on the BRATS2015 dataset of 164 subjects. The experimental results demonstrate our approach significantly outperforms the benchmark method and other state-of-the-art medical image synthesis methods in both quantitative and qualitative measures. Compared with the pix2pixGANs method, the PSNR improves from 23.68 to 24.8. Conclusion: The proposed method could be effective in prediction of target MRI sequences, and useful for clinical diagnosis and treatment.

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arXiv2021

IDOL-Net: An Interactive Dual-Domain Parallel Network for CT Metal Artifact Reduction

Due to the presence of metallic implants, the imaging quality of computed tomography (CT) would be heavily degraded. With the rapid development of deep learning, several network models have been proposed for metal artifact reduction (MAR). Since the dual-domain MAR methods can leverage the hybrid information from both sinogram and image domains, they have significantly improved the performance compared to single-domain methods. However,current dual-domain methods usually operate on both domains in a specific order, which implicitly imposes a certain priority prior into MAR and may ignore the latent information interaction between both domains. To address this problem, in this paper, we propose a novel interactive dualdomain parallel network for CT MAR, dubbed as IDOLNet. Different from existing dual-domain methods, the proposed IDOL-Net is composed of two modules. The disentanglement module is utilized to generate high-quality prior sinogram and image as the complementary inputs. The follow-up refinement module consists of two parallel and interactive branches that simultaneously operate on image and sinogram domain, fully exploiting the latent information interaction between both domains. The simulated and clinical results demonstrate that the proposed IDOL-Net outperforms several state-of-the-art models in both qualitative and quantitative aspects.

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arXiv2021

MANAS: Multi-Scale and Multi-Level Neural Architecture Search for Low-Dose CT Denoising

Lowering the radiation dose in computed tomography (CT) can greatly reduce the potential risk to public health. However, the reconstructed images from the dose-reduced CT or low-dose CT (LDCT) suffer from severe noise, compromising the subsequent diagnosis and analysis. Recently, convolutional neural networks have achieved promising results in removing noise from LDCT images; the network architectures used are either handcrafted or built on top of conventional networks such as ResNet and U-Net. Recent advance on neural network architecture search (NAS) has proved that the network architecture has a dramatic effect on the model performance, which indicates that current network architectures for LDCT may be sub-optimal. Therefore, in this paper, we make the first attempt to apply NAS to LDCT and propose a multi-scale and multi-level NAS for LDCT denoising, termed MANAS. On the one hand, the proposed MANAS fuses features extracted by different scale cells to capture multi-scale image structural details. On the other hand, the proposed MANAS can search a hybrid cell- and network-level structure for better performance. Extensively experimental results on three different dose levels demonstrate that the proposed MANAS can achieve better performance in terms of preserving image structural details than several state-of-the-art methods. In addition, we also validate the effectiveness of the multi-scale and multi-level architecture for LDCT denoising.

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arXiv2021

TPPI-Net: Towards Efficient and Practical Hyperspectral Image Classification

Hyperspectral Image(HSI) classification is the most vibrant field of research in the hyperspectral community, which aims to assign each pixel in the image to one certain category based on its spectral-spatial characteristics. Recently, some spectral-spatial-feature based DCNNs have been proposed and demonstrated remarkable classification performance. When facing a real HSI, however, these Networks have to deal with the pixels in the image one by one. The pixel-wise processing strategy is inefficient since there are numerous repeated calculations between adjacent pixels. In this paper, firstly, a brand new Network design mechanism TPPI (training based on pixel and prediction based on image) is proposed for HSI classification, which makes it possible to provide efficient and practical HSI classification with the restrictive conditions attached to the hyperspectral dataset. And then, according to the TPPI mechanism, TPPI-Net is derived based on the state of the art networks for HSI classification. Experimental results show that the proposed TPPI-Net can not only obtain high classification accuracy equivalent to the state of the art networks for HSI classification, but also greatly reduce the computational complexity of hyperspectral image prediction.

cs.CV↗

arXiv2021

DAN-Net: Dual-Domain Adaptive-Scaling Non-local Network for CT Metal Artifact Reduction

Metal implants can heavily attenuate X-rays in computed tomography (CT) scans, leading to severe artifacts in reconstructed images, which significantly jeopardize image quality and negatively impact subsequent diagnoses and treatment planning. With the rapid development of deep learning in the field of medical imaging, several network models have been proposed for metal artifact reduction (MAR) in CT. Despite the encouraging results achieved by these methods, there is still much room to further improve performance. In this paper, a novel Dual-domain Adaptive-scaling Non-local network (DAN-Net) for MAR. We correct the corrupted sinogram using adaptive scaling first to preserve more tissue and bone details as a more informative input. Then, an end-to-end dual-domain network is adopted to successively process the sinogram and its corresponding reconstructed image generated by the analytical reconstruction layer. In addition, to better suppress the existing artifacts and restrain the potential secondary artifacts caused by inaccurate results of the sinogram-domain network, a novel residual sinogram learning strategy and nonlocal module are leveraged in the proposed network model. In the experiments, the proposed DAN-Net demonstrates performance competitive with several state-of-the-art MAR methods in both qualitative and quantitative aspects.

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arXiv2020

DSU-net: Dense SegU-net for automatic head-and-neck tumor segmentation in MR images

Precise and accurate segmentation of the most common head-and-neck tumor, nasopharyngeal carcinoma (NPC), in MRI sheds light on treatment and regulatory decisions making. However, the large variations in the lesion size and shape of NPC, boundary ambiguity, as well as the limited available annotated samples conspire NPC segmentation in MRI towards a challenging task. In this paper, we propose a Dense SegU-net (DSU-net) framework for automatic NPC segmentation in MRI. Our contribution is threefold. First, different from the traditional decoder in U-net using upconvolution for upsamling, we argue that the restoration from low resolution features to high resolution output should be capable of preserving information significant for precise boundary localization. Hence, we use unpooling to unsample and propose SegU-net. Second, to combat the potential vanishing-gradient problem, we introduce dense blocks which can facilitate feature propagation and reuse. Third, using only cross entropy (CE) as loss function may bring about troubles such as miss-prediction, therefore we propose to use a loss function comprised of both CE loss and Dice loss to train the network. Quantitative and qualitative comparisons are carried out extensively on in-house datasets, the experimental results show that our proposed architecture outperforms the existing state-of-the-art segmentation networks.

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arXiv2020

LEARN++: Recurrent Dual-Domain Reconstruction Network for Compressed Sensing CT

Compressed sensing (CS) computed tomography has been proven to be important for several clinical applications, such as sparse-view computed tomography (CT), digital tomosynthesis and interior tomography. Traditional compressed sensing focuses on the design of handcrafted prior regularizers, which are usually image-dependent and time-consuming. Inspired by recently proposed deep learning-based CT reconstruction models, we extend the state-of-the-art LEARN model to a dual-domain version, dubbed LEARN++. Different from existing iteration unrolling methods, which only involve projection data in the data consistency layer, the proposed LEARN++ model integrates two parallel and interactive subnetworks to perform image restoration and sinogram inpainting operations on both the image and projection domains simultaneously, which can fully explore the latent relations between projection data and reconstructed images. The experimental results demonstrate that the proposed LEARN++ model achieves competitive qualitative and quantitative results compared to several state-of-the-art methods in terms of both artifact reduction and detail preservation.

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arXiv2020

CT Reconstruction with PDF: Parameter-Dependent Framework for Multiple Scanning Geometries and Dose Levels

Current mainstream of CT reconstruction methods based on deep learning usually needs to fix the scanning geometry and dose level, which will significantly aggravate the training cost and need more training data for clinical application. In this paper, we propose a parameter-dependent framework (PDF) which trains data with multiple scanning geometries and dose levels simultaneously. In the proposed PDF, the geometry and dose level are parameterized and fed into two multi-layer perceptrons (MLPs). The MLPs are leveraged to modulate the feature maps of CT reconstruction network, which condition the network outputs on different scanning geometries and dose levels. The experiments show that our proposed method can obtain competing performance similar to the original network trained with specific geometry and dose level, which can efficiently save the extra training cost for multiple scanning geometries and dose levels.

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arXiv2020

Fourth-Order Nonlocal Tensor Decomposition Model for Spectral Computed Tomography

Spectral computed tomography (CT) can reconstruct spectral images from different energy bins using photon counting detectors (PCDs). However, due to the limited photons and counting rate in the corresponding spectral fraction, the reconstructed spectral images usually suffer from severe noise. In this paper, a fourth-order nonlocal tensor decomposition model for spectral CT image reconstruction (FONT-SIR) method is proposed. Similar patches are collected in both spatial and spectral dimensions simultaneously to form the basic tensor unit. Additionally, principal component analysis (PCA) is applied to extract latent features from the patches for a robust and efficient similarity measure. Then, low-rank and sparsity decomposition is performed on the produced fourth-order tensor unit, and the weighted nuclear norm and total variation (TV) norm are used to enforce the low-rank and sparsity constraints, respectively. The alternating direction method of multipliers (ADMM) is adopted to optimize the objective function. The experimental results with our proposed FONT-SIR demonstrates a superior qualitative and quantitative performance for both simulated and real data sets relative to several state-of-the-art methods, in terms of noise suppression and detail preservation.

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arXiv2020

ASMFS: Adaptive-Similarity-based Multi-modality Feature Selection for Classification of Alzheimer's Disease

With the increasing amounts of high-dimensional heterogeneous data to be processed, multi-modality feature selection has become an important research direction in medical image analysis. Traditional methods usually depict the data structure using fixed and predefined similarity matrix for each modality separately, without considering the potential relationship structure across different modalities. In this paper, we propose a novel multi-modality feature selection method, which performs feature selection and local similarity learning simultaniously. Specially, a similarity matrix is learned by jointly considering different imaging modalities. And at the same time, feature selection is conducted by imposing sparse l_{2, 1} norm constraint. The effectiveness of our proposed joint learning method can be well demonstrated by the experimental results on Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset, which outperforms existing the state-of-the-art multi-modality approaches.

cs.CV↗

arXiv2020

MAGIC: Manifold and Graph Integrative Convolutional Network for Low-Dose CT Reconstruction

Low-dose computed tomography (LDCT) scans, which can effectively alleviate the radiation problem, will degrade the imaging quality. In this paper, we propose a novel LDCT reconstruction network that unrolls the iterative scheme and performs in both image and manifold spaces. Because patch manifolds of medical images have low-dimensional structures, we can build graphs from the manifolds. Then, we simultaneously leverage the spatial convolution to extract the local pixel-level features from the images and incorporate the graph convolution to analyze the nonlocal topological features in manifold space. The experiments show that our proposed method outperforms both the quantitative and qualitative aspects of state-of-the-art methods. In addition, aided by a projection loss component, our proposed method also demonstrates superior performance for semi-supervised learning. The network can remove most noise while maintaining the details of only 10% (40 slices) of the training data labeled.

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arXiv2020

Noise-Powered Disentangled Representation for Unsupervised Speckle Reduction of Optical Coherence Tomography Images

Due to its noninvasive character, optical coherence tomography (OCT) has become a popular diagnostic method in clinical settings. However, the low-coherence interferometric imaging procedure is inevitably contaminated by heavy speckle noise, which impairs both visual quality and diagnosis of various ocular diseases. Although deep learning has been applied for image denoising and achieved promising results, the lack of well-registered clean and noisy image pairs makes it impractical for supervised learning-based approaches to achieve satisfactory OCT image denoising results. In this paper, we propose an unsupervised OCT image speckle reduction algorithm that does not rely on well-registered image pairs. Specifically, by employing the ideas of disentangled representation and generative adversarial network, the proposed method first disentangles the noisy image into content and noise spaces by corresponding encoders. Then, the generator is used to predict the denoised OCT image with the extracted content features. In addition, the noise patches cropped from the noisy image are utilized to facilitate more accurate disentanglement. Extensive experiments have been conducted, and the results suggest that our proposed method is superior to the classic methods and demonstrates competitive performance to several recently proposed learning-based approaches in both quantitative and qualitative aspects.

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arXiv2020

Hyper RPCA: Joint Maximum Correntropy Criterion and Laplacian Scale Mixture Modeling On-the-Fly for Moving Object Detection

Moving object detection is critical for automated video analysis in many vision-related tasks, such as surveillance tracking, video compression coding, etc. Robust Principal Component Analysis (RPCA), as one of the most popular moving object modelling methods, aims to separate the temporally varying (i.e., moving) foreground objects from the static background in video, assuming the background frames to be low-rank while the foreground to be spatially sparse. Classic RPCA imposes sparsity of the foreground component using l1-norm, and minimizes the modeling error via 2-norm. We show that such assumptions can be too restrictive in practice, which limits the effectiveness of the classic RPCA, especially when processing videos with dynamic background, camera jitter, camouflaged moving object, etc. In this paper, we propose a novel RPCA-based model, called Hyper RPCA, to detect moving objects on the fly. Different from classic RPCA, the proposed Hyper RPCA jointly applies the maximum correntropy criterion (MCC) for the modeling error, and Laplacian scale mixture (LSM) model for foreground objects. Extensive experiments have been conducted, and the results demonstrate that the proposed Hyper RPCA has competitive performance for foreground detection to the state-of-the-art algorithms on several well-known benchmark datasets.

cs.CV↗

arXiv2020

MD-Recon-Net: A Parallel Dual-Domain Convolutional Neural Network for Compressed Sensing MRI

Compressed sensing magnetic resonance imaging (CS-MRI) is a theoretical framework that can accurately reconstruct images from undersampled k-space data with a much lower sampling rate than the one set by the classical Nyquist-Shannon sampling theorem. Therefore, CS-MRI can efficiently accelerate acquisition time and relieve the psychological burden on patients while maintaining high imaging quality. The problems with traditional CS-MRI reconstruction are solved by iterative numerical solvers, which usually suffer from expensive computational cost and the lack of accurate handcrafted priori. In this paper, inspired by deep learning's (DL's) fast inference and excellent end-to-end performance, we propose a novel cascaded convolutional neural network called MD-Recon-Net to facilitate fast and accurate MRI reconstruction. Especially, different from existing DL-based methods, which operate on single domain data or both domains in a certain order, our proposed MD-Recon-Net contains two parallel and interactive branches that simultaneously perform on k-space and spatial-domain data, exploring the latent relationship between k-space and the spatial domain. The simulated experimental results show that the proposed method not only achieves competitive visual effects to several state-of-the-art methods, but also outperforms other DL-based methods in terms of model scale and computational cost.

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arXiv2019

Denoising of 3-D Magnetic Resonance Images Using a Residual Encoder-Decoder Wasserstein Generative Adversarial Network

Structure-preserved denoising of 3D magnetic resonance imaging (MRI) images is a critical step in medical image analysis. Over the past few years, many algorithms with impressive performances have been proposed. In this paper, inspired by the idea of deep learning, we introduce an MRI denoising method based on the residual encoder-decoder Wasserstein generative adversarial network (RED-WGAN). Specifically, to explore the structure similarity between neighboring slices, a 3D configuration is utilized as the basic processing unit. Residual autoencoders combined with deconvolution operations are introduced into the generator network. Furthermore, to alleviate the oversmoothing shortcoming of the traditional mean squared error (MSE) loss function, the perceptual similarity, which is implemented by calculating the distances in the feature space extracted by a pretrained VGG-19 network, is incorporated with the MSE and adversarial losses to form the new loss function. Extensive experiments are implemented to assess the performance of the proposed method. The experimental results show that the proposed RED-WGAN achieves performance superior to several state-of-the-art methods in both simulated and real clinical data. In particular, our method demonstrates powerful abilities in both noise suppression and structure preservation.

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arXiv2019

Convolutional Sparse Coding for Compressed Sensing CT Reconstruction

Over the past few years, dictionary learning (DL)-based methods have been successfully used in various image reconstruction problems. However, traditional DL-based computed tomography (CT) reconstruction methods are patch-based and ignore the consistency of pixels in overlapped patches. In addition, the features learned by these methods always contain shifted versions of the same features. In recent years, convolutional sparse coding (CSC) has been developed to address these problems. In this paper, inspired by several successful applications of CSC in the field of signal processing, we explore the potential of CSC in sparse-view CT reconstruction. By directly working on the whole image, without the necessity of dividing the image into overlapped patches in DL-based methods, the proposed methods can maintain more details and avoid artifacts caused by patch aggregation. With predetermined filters, an alternating scheme is developed to optimize the objective function. Extensive experiments with simulated and real CT data were performed to validate the effectiveness of the proposed methods. Qualitative and quantitative results demonstrate that the proposed methods achieve better performance than several existing state-of-the-art methods.

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