SearcharxivSearch

arXiv subjects

Jimin Cho

Publications and source records attributed to Jimin Cho.

2 recordsLinked to original sources

Programmable spatial coherence tomography: diffraction-limited three-dimensional reflection imaging under modulated monochromatic illumination

Depth sectioning in reflection microscopy has predominantly relied on temporal coherence gating. Here we show that volumetric reflection tomography at diffraction-limited resolution can be achieved under monochromatic illumination by engineering spatial, rather than temporal, coherence. In programmable spatial coherence tomography (PSCT), a sequence of pupil-coded illumination patterns with angular-spectrum diversity generates measurement redundancy enabling the system to calibrate itself, jointly retrieving aberrations, illumination profiles, and sample motion without guide stars or modal priors. We demonstrate label-free volumetric imaging of thick human tissues, organoids, frequency-resolved dynamic contrast, and high-resolution in vivo brain imaging through a cranial window. These results position PSCT as an alternative to temporal coherence based reflection imaging in complex biological systems.

physics.optics

Morphology-Preserving Holotomography: Quantitative Analysis of 3D Organoid Dynamics

Organoids are three-dimensional (3D) in vitro models for studying tissue development, disease progression, and physiological responses. Holotomography (HT) enables long-term, label-free imaging of live organoids by reconstructing volumetric refractive-index (RI) maps, but quantitative analysis is limited by the missing-cone artifact, which introduces anisotropic resolution and axial distortion. Here, we present a quantitative analysis framework that addresses the missing-cone problem at the level of image representation rather than reconstruction. We introduce morphology-preserving holotomography (MP-HT), a torus-shaped spatial filtering strategy that emphasizes high-spatial-frequency RI texture while suppressing low-frequency components most susceptible to missing-cone-induced distortion. Based on MP-HT, we develop a 3D segmentation pipeline for robust separation of epithelial and luminal structures, together with a model-based RI quantification approach that incorporates the system point spread function to enable morphology-independent estimation of dry-mass density and total dry mass. We apply the framework to long-term imaging of live hepatic organoids undergoing expansion, collapse, and fusion. The results demonstrate consistent segmentation across diverse geometries and reveal coordinated epithelial-lumen remodeling, breakdown of morphometric homeostasis during collapse, and transient biophysical fluctuations during fusion. Overall, this work establishes a physically transparent and reproducible approach for quantitative, label-free analysis of organoid dynamics in three dimensions.

physics.med-ph