arXiv subjects

Jimmy Gonzalez Nuñez

Publications and source records attributed to Jimmy Gonzalez Nuñez.

3 recordsLinked to original sources

arXiv2025

Spontaneous spatial sorting by cell shape in growing colonies of rod-like bacteria

Mechanical interactions among cells in a growing microbial colony can significantly influence the colony's spatial genetic structure and, thus, evolutionary outcomes such as the fates of rare mutations. Here, we computationally investigate how this spatial genetic structure changes as a result of heritable phenotypic variations in cell shape. By modeling rod-like bacterial cells as lengthening and dividing circo-rectangles in a 2D Brownian dynamics framework, we simulate the growth of a colony containing two populations with different aspect ratios. Compared to monodisperse colonies, such bidisperse colonies exhibit diminished intermixing between sub-populations when the less elongated cells are too short to nematically order, instead forming large clusters. We find that the cells with longer aspect ratio gradually segregate to the colony periphery. We present evidence that this demixing is related to nematic order in the bulk and to active nematic mixing dynamics near the periphery. These findings are qualitatively robust across different growth rate protocols and initial conditions. Because the periphery is often an advantageous position when nutrients are limited, our results suggest a possible evolutionary selective pressure of mechanical origin that favors large cell aspect ratio.

cond-mat.soft↗

arXiv2024

Geometry-Induced Competitive Release in a Meta-Population Model of Range Expansions in Disordered Environments

Rare evolutionary events, such as the rise to prominence of deleterious mutations, can have drastic impacts on the evolution of growing populations. Heterogeneous environments may reduce the influence of selection on evolutionary outcomes through various mechanisms, including pinning of genetic lineages and of the population fronts. These effects play significant roles in enabling competitive release of otherwise trapped mutations. In this work we show that environments containing random arrangements of "hotspot" patches, where locally abundant resources enhance growth rates equally for all sub-populations, give rise to massively enriched deleterious mutant clones. We derive a geometrical optics description of mutant bubbles, which result from interactions with hotspots, that successfully predicts the observed increase in mutant survival. This prediction requires no fitting parameters and holds well in scenarios of rare mutations and of adaptation from standing variation. In addition, we find that the influence of environmental noise in shaping the fate of rare mutations is maximal near a percolation transition of overlapping discs, beyond which mutant survival decreases.

q-bio.PE↗

arXiv2024

Connecting the Dots: Range Expansions across Landscapes with Quenched Noise

When biological populations expand into new territory, the evolutionary outcomes can be strongly influenced by genetic drift, the random fluctuations in allele frequencies. Meanwhile, spatial variability in the environment can also significantly influence the competition between sub-populations vying for space. Little is known about the interplay of these intrinsic and extrinsic sources of noise in population dynamics: When does environmental heterogeneity dominate over genetic drift or vice versa, and what distinguishes their population genetics signatures? Here, in the context of neutral evolution, we examine the interplay between a population's intrinsic, demographic noise and an extrinsic, quenched random noise provided by a heterogeneous environment. Using a multi-species Eden model, we simulate a population expanding over a landscape with random variations in local growth rates and measure how this variability affects genealogical tree structure, and thus genetic diversity. We find that, for strong heterogeneity, the genetic makeup of the expansion front is to a great extent predetermined by the set of fastest paths through the environment. The landscape-dependent statistics of these optimal paths then supersede those of the population's intrinsic noise as the main determinant of evolutionary dynamics. Remarkably, the statistics for coalescence of genealogical lineages, derived from those deterministic paths, strongly resemble the statistics emerging from demographic noise alone in uniform landscapes. This cautions interpretations of coalescence statistics and raises new challenges for inferring past population dynamics.

q-bio.PE↗