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Jin Lu

Publications and source records attributed to Jin Lu.

At least 37 records · Page 2Linked to original sources

Advancing time series completion via RFAMoE and MDFF

Recent studies show that using diffusion models for time series signal reconstruction holds great promise. However, such approaches remain largely unexplored in the domain of medical time series. The unique characteristics of the physiological time series signals, such as multivariate, high temporal variability, highly noisy, and artifact-prone, make deep learning-based approaches still challenging for tasks such as imputation. Hence, we propose a novel Mixture of Experts (MoE)-based noise estimator within a score-based diffusion framework. Specifically, the Receptive Field Adaptive MoE (RFAMoE) module is designed to enable each channel to adaptively select desired receptive fields throughout the diffusion process. Moreover, recent literature has found that when generating a physiological signal, performing multiple inferences and averaging the reconstructed signals can effectively reduce reconstruction errors, but at the cost of significant computational and latency overhead. We design a Fusion MoE module and innovatively leverage the nature of MoE module to generate K noise signals in parallel, fuse them using a routing mechanism, and complete signal reconstruction in a single inference step. This design not only improves performance over previous methods but also eliminates the substantial computational cost and latency associated with multiple inference processes. Extensive results demonstrate that our proposed framework consistently outperforms diffusion-based SOTA works on different tasks and datasets.

cs.LG↗

Retrieval-Augmented Generation in Biomedicine: A Survey of Technologies, Datasets, and Clinical Applications

Large language models (LLMs) in biomedicine face a fundamental conflict between static parameter knowledge and the dynamic nature of clinical evidence. Retrieval-Augmented Generation (RAG) addresses this by grounding generation in external data, yet it introduces new complexities in latency and architecture. This survey synthesizes the biomedical RAG landscape (2020-2025), classifying systems into naive, advanced, and modular paradigms. Beyond a technological taxonomy, we formalize the biomedical RAG trilemma, identifying the inherent trade-offs between reasoning depth, inference latency, and data privacy that constrain current clinical deployment. We analyze how recent agentic workflows enhance diagnostic reasoning but risk prohibitive latency, and how privacy constraints dictate the choice between powerful cloud-based models and local deployment. Finally, we outline the alignment gap in multimodal RAG and propose future directions for self-correcting, verifiable clinical agents.

q-bio.OT↗

MARAuder's Map: Motion-Aware Real-time Activity Recognition with Layout-Based Trajectories

Ambient sensor-based human activity recognition (HAR) in smart homes remains challenging due to the need for real-time inference, spatially grounded reasoning, and context-aware temporal modeling. Existing approaches often rely on pre-segmented, within-activity data and overlook the physical layout of the environment, limiting their robustness in continuous, real-world deployments. In this paper, we propose MARAuder's Map, a novel framework for real-time activity recognition from raw, unsegmented sensor streams. Our method projects sensor activations onto the physical floorplan to generate trajectory-aware, image-like sequences that capture the spatial flow of human movement. These representations are processed by a hybrid deep learning model that jointly captures spatial structure and temporal dependencies. To enhance temporal awareness, we introduce a learnable time embedding module that encodes contextual cues such as hour-of-day and day-of-week. Additionally, an attention-based encoder selectively focuses on informative segments within each observation window, enabling accurate recognition even under cross-activity transitions and temporal ambiguity. Extensive experiments on multiple real-world smart home datasets demonstrate that our method outperforms strong baselines, offering a practical solution for real-time HAR in ambient sensor environments.

cs.LG↗

Harmony in Divergence: Towards Fast, Accurate, and Memory-efficient Zeroth-order LLM Fine-tuning

Large language models (LLMs) excel across various tasks, but standard first-order (FO) fine-tuning demands considerable memory, significantly limiting real-world deployment. Recently, zeroth-order (ZO) optimization stood out as a promising memory-efficient training paradigm, avoiding backward passes and relying solely on forward passes for gradient estimation, making it attractive for resource-constrained scenarios. However, ZO method lags far behind FO method in both convergence speed and accuracy. To bridge the gap, we introduce a novel layer-wise divergence analysis that uncovers the distinct update pattern of FO and ZO optimization. Aiming to resemble the learning capacity of FO method from the findings, we propose Divergence-driven Zeroth-Order (DiZO) optimization. DiZO conducts divergence-driven layer adaptation by incorporating projections to ZO updates, generating diverse-magnitude updates precisely scaled to layer-wise individual optimization needs. Our results demonstrate that DiZO significantly reduces the needed iterations for convergence without sacrificing throughput, cutting training GPU hours by up to 48\% on various datasets. Moreover, DiZO consistently outperforms the representative ZO baselines in fine-tuning RoBERTa-large, OPT-series, and Llama-series on downstream tasks and, in some cases, even surpasses memory-intensive FO fine-tuning. Our code is released at https://github.com/Skilteee/DiZO.

cs.LG↗

End-to-End On-Device Quantization-Aware Training for LLMs at Inference Cost

Quantization is an effective technique to reduce the deployment cost of large language models (LLMs), and post-training quantization (PTQ) has been widely studied due to its efficiency. However, existing PTQ methods are limited by their inability to fine-tune model parameters and often suffer significant accuracy loss in low-bit scenarios. Quantization-aware training (QAT) provides a more principled solution, but its reliance on backpropagation incurs prohibitive memory costs, limiting its practicality for LLM deployment. To address these challenges, we propose ZeroQAT, a zeroth-order optimization-based QAT framework that supports both weight and activation quantization. ZeroQAT leverages forward-only gradient estimation to eliminate backpropagation, substantially reducing computational and memory overhead while retaining the benefits of end-to-end optimization. We further introduce a lightweight variant of ZeroQAT for quantized fine-tuning, which freezes and pre-quantizes most parameters to further cut memory usage. Experiments show that ZeroQAT consistently outperforms representative PTQ and QAT baselines while requiring significantly less memory. For example, ZeroQAT enables fine-tuning of a 13B model at extremely low bit-widths (e.g., 2-4 bits) on a single 8GB GPU, and even allows fine-tuning a 6.7B model on a OnePlus 12 smartphone, demonstrating its practicality for end-to-end QAT on resource-limited edge devices.

cs.LG↗

Rethinking the Potential of Layer Freezing for Efficient DNN Training

With the growing size of deep neural networks and datasets, the computational costs of training have significantly increased. The layer-freezing technique has recently attracted great attention as a promising method to effectively reduce the cost of network training. However, in traditional layer-freezing methods, frozen layers are still required for forward propagation to generate feature maps for unfrozen layers, limiting the reduction of computation costs. To overcome this, prior works proposed a hypothetical solution, which caches feature maps from frozen layers as a new dataset, allowing later layers to train directly on stored feature maps. While this approach appears to be straightforward, it presents several major challenges that are severely overlooked by prior literature, such as how to effectively apply augmentations to feature maps and the substantial storage overhead introduced. If these overlooked challenges are not addressed, the performance of the caching method will be severely impacted and even make it infeasible. This paper is the first to comprehensively explore these challenges and provides a systematic solution. To improve training accuracy, we propose \textit{similarity-aware channel augmentation}, which caches channels with high augmentation sensitivity with a minimum additional storage cost. To mitigate storage overhead, we incorporate lossy data compression into layer freezing and design a \textit{progressive compression} strategy, which increases compression rates as more layers are frozen, effectively reducing storage costs. Finally, our solution achieves significant reductions in training cost while maintaining model accuracy, with a minor time overhead. Additionally, we conduct a comprehensive evaluation of freezing and compression strategies, providing insights into optimizing their application for efficient DNN training.

cs.LG↗

Fact or Guesswork? Evaluating Large Language Models' Medical Knowledge with Structured One-Hop Judgments

Large language models (LLMs) have been widely adopted in various downstream task domains. However, their abilities to directly recall and apply factual medical knowledge remains under-explored. Most existing medical QA benchmarks assess complex reasoning or multi-hop inference, making it difficult to isolate LLMs' inherent medical knowledge from their reasoning capabilities. Given the high-stakes nature of medical applications, where incorrect information can have critical consequences, it is essential to evaluate the factuality of LLMs to retain medical knowledge. To address this challenge, we introduce the Medical Knowledge Judgment Dataset (MKJ), a dataset derived from the Unified Medical Language System (UMLS), a comprehensive repository of standardized biomedical vocabularies and knowledge graphs. Through a binary classification framework, MKJ evaluates LLMs' grasp of fundamental medical facts by having them assess the validity of concise, one-hop statements, enabling direct measurement of their knowledge retention capabilities. Our experiments reveal that LLMs have difficulty accurately recalling medical facts, with performances varying substantially across semantic types and showing notable weakness in uncommon medical conditions. Furthermore, LLMs show poor calibration, often being overconfident in incorrect answers. To mitigate these issues, we explore retrieval-augmented generation, demonstrating its effectiveness in improving factual accuracy and reducing uncertainty in medical decision-making.

cs.CL↗

A Foundation Model for DAS Signal Recognition and Visual Prompt Tuning of the Pre-trained Model for Downstream Tasks

Distributed Acoustic Sensing (DAS) technology finds growing applications across various domains. However, data distribution disparities due to heterogeneous sensing environments pose challenges for data-driven artificial intelligence (AI) models, limiting cross-domain generalization and facing a shortage of labeled training data. To address these issues, this study proposes a foundational model for DAS signal recognition based on a Masked Autoencoder, named MAEPD. The MAEPD model is pretrained on a dataset of 635,860 samples, encompassing DAS gait spatiotemporal signals, 2D GASF images for perimeter security, 2D time-frequency images for pipeline leakage, and open-dataset signals including whale vocalizations and seismic activities, using a self-supervised mask reconstruction task to capture deep semantic features of DAS signals. Visual Prompt Tuning (VPT) is employed for downstream recognition tasks. This method freezes the pretrained backbone parameters and fine-tunes only a small set of learnable visual prompt vectors inserted into the Transformer encoder layers. Experiments on the NVIDIA GeForce RTX 4080 Super platform validate MAEPD using indoor gait recognition as a downstream task. The VPT-Deep approach achieves a classification accuracy of 96.94% with just 0.322% of parameters fine-tuned, surpassing the traditional Full Fine Tuning (FFT) method by 0.61% and reducing training time by 45%. The model also exhibits robust performance in pipeline leakage detection, confirming the generality, efficiency, and scalability of MAEPD as a foundational model. This approach offers a novel paradigm for addressing the limited generalization of signal recognition models in the DAS domain.

cs.CV↗

Perturbation-efficient Zeroth-order Optimization for Hardware-friendly On-device Training

Zeroth-order (ZO) optimization is an emerging deep neural network (DNN) training paradigm that offers computational simplicity and memory savings. However, this seemingly promising approach faces a significant and long-ignored challenge. ZO requires generating a substantial number of Gaussian random numbers, which poses significant difficulties and even makes it infeasible for hardware platforms, such as FPGAs and ASICs. In this paper, we identify this critical issue, which arises from the mismatch between algorithm and hardware designers. To address this issue, we proposed PeZO, a perturbation-efficient ZO framework. Specifically, we design random number reuse strategies to significantly reduce the demand for random number generation and introduce a hardware-friendly adaptive scaling method to replace the costly Gaussian distribution with a uniform distribution. Our experiments show that PeZO reduces the required LUTs and FFs for random number generation by 48.6\% and 12.7\%, and saves at maximum 86\% power consumption, all without compromising training performance, making ZO optimization feasible for on-device training. To the best of our knowledge, we are the first to explore the potential of on-device ZO optimization, providing valuable insights for future research.

cs.LG↗

A Black Start Strategy for Hydrogen-integrated Renewable Grids with Energy Storage Systems

With the increasing integration of renewable energy, the reliability and resilience of modern power systems are of vital significance. However, large-scale blackouts caused by natural disasters or equipment failures remain a significant threat, necessitating effective restoration strategies. This study proposes novel black start models for modern power systems that integrate fuel cells and battery storage, recognizing their distinct characteristics and contributions to grid resilience. These models specifically address the restoration of electrical grids, including the energization paths and time of the transmission network, while accounting for the unique power output traits of fuel cells and the energy storage capacity of batteries as black start resources. Black start simulations, comparing the generator startup sequence (GSUS) with fuel cell versus battery systems, are performed on the IEEE 39-bus system. We conduct sensitivity analyses on fuel cell capacity, battery storage capacity, initial state of charge (SOC), and resource locations to identify optimal scenarios for black start operations.

eess.SY↗

Smarter Together: Combining Large Language Models and Small Models for Physiological Signals Visual Inspection

Large language models (LLMs) have shown promising capabilities in visually interpreting medical time-series data. However, their general-purpose design can limit domain-specific precision, and the proprietary nature of many models poses challenges for fine-tuning on specialized clinical datasets. Conversely, small specialized models (SSMs) offer strong performance on focused tasks but lack the broader reasoning needed for complex medical decision-making. To address these complementary limitations, we introduce \ConMIL{} (Conformalized Multiple Instance Learning), a novel decision-support framework distinctively synergizes three key components: (1) a new Multiple Instance Learning (MIL) mechanism, QTrans-Pooling, designed for per-class interpretability in identifying clinically relevant physiological signal segments; (2) conformal prediction, integrated with MIL to generate calibrated, set-valued outputs with statistical reliability guarantees; and (3) a structured approach for these interpretable and uncertainty-quantified SSM outputs to enhance the visual inspection capabilities of LLMs. Our experiments on arrhythmia detection and sleep stage classification demonstrate that \ConMIL{} can enhance the accuracy of LLMs such as ChatGPT4.0, Qwen2-VL-7B, and MiMo-VL-7B-RL. For example, \ConMIL{}-supported Qwen2-VL-7B and MiMo-VL-7B-RL both achieves 94.92% and 96.82% precision on confident samples and (70.61% and 78.02%)/(78.10% and 71.98%) on uncertain samples for the two tasks, compared to 46.13% and 13.16% using the LLM alone. These results suggest that integrating task-specific models with LLMs may offer a promising pathway toward more interpretable and trustworthy AI-driven clinical decision support.

cs.AI↗

A Synthetic Texas Power System with Time-Series Weather-Dependent Spatiotemporal Profiles

We developed a synthetic Texas 123-bus backbone transmission system (TX-123BT) with spatio-temporally correlated grid profiles of solar power, wind power, dynamic line ratings and loads at one-hour resolution for five continuous years, which demonstrates unique advantages compared to conventional test cases that offer single static system profile snapshots. Three weather-dependent models are used to create the hourly wind power productions, solar power productions, and dynamic line ratings respectively. The actual historical weather information is also provided along with this dataset, which is suitable for machine learning models. Security-constrained unit commitment is conducted on TX-123BT daily grid profiles and numerical results are compared with the actual Texas system for validation. The created hourly DLR profiles can cut operating cost from USD 8.09 M to USD 7.95 M (-1.7 %), raises renewable dispatch by 1.3 %, and lowers average LMPs from USD 18.66 to USD 17.98 /MWh (-3.6 %). Two hydrogen options -- a 200 MW dual hub and a 500 MW hydrogen-energy transmission and conversion system -- reduce high-load Q3 daily costs by 13.9 % and 14.1 %, respectively. Sensitivity tests show that suppressing the high-resolution weather-driven profiles can push system cost up by as much as 15 %, demonstrating the economic weight of temporal detail.

eess.SY↗

ADLGen: Synthesizing Symbolic, Event-Triggered Sensor Sequences for Human Activity Modeling

Real world collection of Activities of Daily Living data is challenging due to privacy concerns, costly deployment and labeling, and the inherent sparsity and imbalance of human behavior. We present ADLGen, a generative framework specifically designed to synthesize realistic, event triggered, and symbolic sensor sequences for ambient assistive environments. ADLGen integrates a decoder only Transformer with sign based symbolic temporal encoding, and a context and layout aware sampling mechanism to guide generation toward semantically rich and physically plausible sensor event sequences. To enhance semantic fidelity and correct structural inconsistencies, we further incorporate a large language model into an automatic generate evaluate refine loop, which verifies logical, behavioral, and temporal coherence and generates correction rules without manual intervention or environment specific tuning. Through comprehensive experiments with novel evaluation metrics, ADLGen is shown to outperform baseline generators in statistical fidelity, semantic richness, and downstream activity recognition, offering a scalable and privacy-preserving solution for ADL data synthesis.

cs.LG↗

From Task-Specific Models to Unified Systems: A Review of Model Merging Approaches

Model merging has achieved significant success, with numerous innovative methods proposed to enhance capabilities by combining multiple models. However, challenges persist due to the lack of a unified framework for classification and systematic comparative analysis, leading to inconsistencies in terminologies and categorizations. Meanwhile, as an increasing number of fine-tuned models are publicly available, their original training data often remain inaccessible due to privacy concerns or intellectual property restrictions. This makes traditional multi-task learning based on shared training data impractical. In scenarios where direct access to training data is infeasible, merging model parameters to create a unified model with broad generalization across multiple domains becomes crucial, further underscoring the importance of model merging techniques. Despite the rapid progress in this field, a comprehensive taxonomy and survey summarizing recent advances and predicting future directions are still lacking. This paper addresses these gaps by establishing a new taxonomy of model merging methods, systematically comparing different approaches, and providing an overview of key developments. By offering a structured perspective on this evolving area, we aim to help newcomers quickly grasp the field's landscape and inspire further innovations.

cs.LG↗

HoP: Homeomorphic Polar Learning for Hard Constrained Optimization

Constrained optimization demands highly efficient solvers which promotes the development of learn-to-optimize (L2O) approaches. As a data-driven method, L2O leverages neural networks to efficiently produce approximate solutions. However, a significant challenge remains in ensuring both optimality and feasibility of neural networks' output. To tackle this issue, we introduce Homeomorphic Polar Learning (HoP) to solve the star-convex hard-constrained optimization by embedding homeomorphic mapping in neural networks. The bijective structure enables end-to-end training without extra penalty or correction. For performance evaluation, we evaluate HoP's performance across a variety of synthetic optimization tasks and real-world applications in wireless communications. In all cases, HoP achieves solutions closer to the optimum than existing L2O methods while strictly maintaining feasibility.

cs.LG↗

Large Language Models for Bioinformatics

With the rapid advancements in large language model (LLM) technology and the emergence of bioinformatics-specific language models (BioLMs), there is a growing need for a comprehensive analysis of the current landscape, computational characteristics, and diverse applications. This survey aims to address this need by providing a thorough review of BioLMs, focusing on their evolution, classification, and distinguishing features, alongside a detailed examination of training methodologies, datasets, and evaluation frameworks. We explore the wide-ranging applications of BioLMs in critical areas such as disease diagnosis, drug discovery, and vaccine development, highlighting their impact and transformative potential in bioinformatics. We identify key challenges and limitations inherent in BioLMs, including data privacy and security concerns, interpretability issues, biases in training data and model outputs, and domain adaptation complexities. Finally, we highlight emerging trends and future directions, offering valuable insights to guide researchers and clinicians toward advancing BioLMs for increasingly sophisticated biological and clinical applications.

q-bio.QM↗

HELENE: Hessian Layer-wise Clipping and Gradient Annealing for Accelerating Fine-tuning LLM with Zeroth-order Optimization

Fine-tuning large language models (LLMs) poses significant memory challenges, as the back-propagation process demands extensive resources, especially with growing model sizes. Recent work, MeZO, addresses this issue using a zeroth-order (ZO) optimization method, which reduces memory consumption by matching the usage to the inference phase. However, MeZO experiences slow convergence due to varying curvatures across model parameters. To overcome this limitation, we introduce HELENE, a novel scalable and memory-efficient optimizer that integrates annealed A-GNB gradients with a diagonal Hessian estimation and layer-wise clipping, serving as a second-order pre-conditioner. This combination allows for faster and more stable convergence. Our theoretical analysis demonstrates that HELENE improves convergence rates, particularly for models with heterogeneous layer dimensions, by reducing the dependency on the total parameter space dimension. Instead, the method scales with the largest layer dimension, making it highly suitable for modern LLM architectures. Experimental results on RoBERTa-large and OPT-1.3B across multiple tasks show that HELENE achieves up to a 20x speedup compared to MeZO, with average accuracy improvements of 1.5%. Furthermore, HELENE remains compatible with both full parameter tuning and parameter-efficient fine-tuning (PEFT), outperforming several state-of-the-art optimizers. The codes will be released after reviewing.

cs.LG↗

Towards Next-Generation Medical Agent: How o1 is Reshaping Decision-Making in Medical Scenarios

Artificial Intelligence (AI) has become essential in modern healthcare, with large language models (LLMs) offering promising advances in clinical decision-making. Traditional model-based approaches, including those leveraging in-context demonstrations and those with specialized medical fine-tuning, have demonstrated strong performance in medical language processing but struggle with real-time adaptability, multi-step reasoning, and handling complex medical tasks. Agent-based AI systems address these limitations by incorporating reasoning traces, tool selection based on context, knowledge retrieval, and both short- and long-term memory. These additional features enable the medical AI agent to handle complex medical scenarios where decision-making should be built on real-time interaction with the environment. Therefore, unlike conventional model-based approaches that treat medical queries as isolated questions, medical AI agents approach them as complex tasks and behave more like human doctors. In this paper, we study the choice of the backbone LLM for medical AI agents, which is the foundation for the agent's overall reasoning and action generation. In particular, we consider the emergent o1 model and examine its impact on agents' reasoning, tool-use adaptability, and real-time information retrieval across diverse clinical scenarios, including high-stakes settings such as intensive care units (ICUs). Our findings demonstrate o1's ability to enhance diagnostic accuracy and consistency, paving the way for smarter, more responsive AI tools that support better patient outcomes and decision-making efficacy in clinical practice.

cs.CL↗