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Jin Sima

Publications and source records attributed to Jin Sima.

29 records · Page 2Linked to original sources

On Constant-Weight Binary $B_2$-Sequences

Motivated by applications in polymer-based data storage we introduced the new problem of characterizing the code rate and designing constant-weight binary $B_2$-sequences. Binary $B_2$-sequences are collections of binary strings of length $n$ with the property that the real-valued sums of all distinct pairs of strings are distinct. In addition to this defining property, constant-weight binary $B_2$-sequences also satisfy the constraint that each string has a fixed, relatively small weight $ω$ that scales linearly with $n$. The constant-weight constraint ensures low-cost synthesis and uniform processing of the data readout via tandem mass spectrometers. Our main results include upper bounds on the size of the codes formulated as entropy-optimization problems and constructive lower bounds based on Sidon sequences.

cs.IT↗

Perturbation-Resilient Sets for Dynamic Service Balancing

Balanced and swap-robust minimal trades, introduced in [1], are important for studying the balance and stability of server access request protocols under data popularity changes. Constructions of such trades have so far relied on paired sets obtained through iterative combining of smaller sets that have provable stability guarantees, coupled with exhaustive computer search. Currently, there exists a nonnegligible gap between the resulting total dynamic balance discrepancy and the known theoretical lower bound. We present both new upper and lower bounds on the total service requests discrepancy under limited popularity changes. Our constructive near-optimal approach uses a new class of paired graphs whose vertices are two balanced sets with edges (arcs) that capture the balance and potential balance changes induced by limited-magnitude popularity changes (swaps).

cs.IT↗

Non-binary Codes for Correcting a Burst of at Most t Deletions

The problem of correcting deletions has received significant attention, partly because of the prevalence of these errors in DNA data storage. In this paper, we study the problem of correcting a consecutive burst of at most $t$ deletions in non-binary sequences. We first propose a non-binary code correcting a burst of at most 2 deletions for $q$-ary alphabets. Afterwards, we extend this result to the case where the length of the burst can be at most $t$ where $t$ is a constant. Finally, we consider the setup where the sequences that are transmitted are permutations. The proposed codes are the largest known for their respective parameter regimes.

cs.IT↗

Correcting $k$ Deletions and Insertions in Racetrack Memory

One of the main challenges in developing racetrack memory systems is the limited precision in controlling the track shifts, that in turn affects the reliability of reading and writing the data. A current proposal for combating deletions in racetrack memories is to use redundant heads per-track resulting in multiple copies (potentially erroneous) and recovering the data by solving a specialized version of a sequence reconstruction problem. Using this approach, $k$-deletion correcting codes of length $n$, with $d \ge 2$ heads per-track, with redundancy $\log \log n + 4$ were constructed. However, the known approach requires that $k \le d$, namely, that the number of heads ($d$) is larger than or equal to the number of correctable deletions ($k$). Here we address the question: What is the best redundancy that can be achieved for a $k$-deletion code ($k$ is a constant) if the number of heads is fixed at $d$ (due to implementation constraints)? One of our key results is an answer to this question, namely, we construct codes that can correct $k$ deletions, for any $k$ beyond the known limit of $d$. The code has $4k \log \log n+o(\log \log n)$ redundancy for $k \le 2d-1$. In addition, when $k \ge 2d$, our codes have $2 \lfloor k/d\rfloor \log n+o(\log n)$ redundancy, that we prove it is order-wise optimal, specifically, we prove that the redundancy required for correcting $k$ deletions is at least $\lfloor k/d\rfloor \log n+o(\log n)$. The encoding/decoding complexity of our codes is $O(n\log^{2k}n)$. Finally, we ask a general question: What is the optimal redundancy for codes correcting a combination of at most $k$ deletions and insertions in a $d$-head racetrack memory? We prove that the redundancy sufficient to correct a combination of $k$ deletion and insertion errors is similar to the case of $k$ deletion errors.

cs.IT↗

On Algebraic Constructions of Neural Networks with Small Weights

Neural gates compute functions based on weighted sums of the input variables. The expressive power of neural gates (number of distinct functions it can compute) depends on the weight sizes and, in general, large weights (exponential in the number of inputs) are required. Studying the trade-offs among the weight sizes, circuit size and depth is a well-studied topic both in circuit complexity theory and the practice of neural computation. We propose a new approach for studying these complexity trade-offs by considering a related algebraic framework. Specifically, given a single linear equation with arbitrary coefficients, we would like to express it using a system of linear equations with smaller (even constant) coefficients. The techniques we developed are based on Siegel's Lemma for the bounds, anti-concentration inequalities for the existential results and extensions of Sylvester-type Hadamard matrices for the constructions. We explicitly construct a constant weight, optimal size matrix to compute the EQUALITY function (checking if two integers expressed in binary are equal). Computing EQUALITY with a single linear equation requires exponentially large weights. In addition, we prove the existence of the best-known weight size (linear) matrices to compute the COMPARISON function (comparing between two integers expressed in binary). In the context of the circuit complexity theory, our results improve the upper bounds on the weight sizes for the best-known circuit sizes for EQUALITY and COMPARISON.

cs.CC↗

Trace Reconstruction with Bounded Edit Distance

The trace reconstruction problem studies the number of noisy samples needed to recover an unknown string $\boldsymbol{x}\in\{0,1\}^n$ with high probability, where the samples are independently obtained by passing $\boldsymbol{x}$ through a random deletion channel with deletion probability $q$. The problem is receiving significant attention recently due to its applications in DNA sequencing and DNA storage. Yet, there is still an exponential gap between upper and lower bounds for the trace reconstruction problem. In this paper we study the trace reconstruction problem when $\boldsymbol{x}$ is confined to an edit distance ball of radius $k$, which is essentially equivalent to distinguishing two strings with edit distance at most $k$. It is shown that $n^{O(k)}$ samples suffice to achieve this task with high probability.

cs.IT↗

On Coding over Sliced Information

The interest in channel models in which the data is sent as an unordered set of binary strings has increased lately, due to emerging applications in DNA storage, among others. In this paper we analyze the minimal redundancy of binary codes for this channel under substitution errors, and provide several constructions, some of which are shown to be asymptotically optimal up to constants. The surprising result in this paper is that while the information vector is sliced into a set of unordered strings, the amount of redundant bits that are required to correct errors is order-wise equivalent to the amount required in the classical error correcting paradigm.

cs.IT↗

Optimal $k$-Deletion Correcting Codes

Levenshtein introduced the problem of constructing $k$-deletion correcting codes in 1966, proved that the optimal redundancy of those codes is $O(k\log N)$, and proposed an optimal redundancy single-deletion correcting code (using the so-called VT construction). However, the problem of constructing optimal redundancy $k$-deletion correcting codes remained open. Our key contribution is a solution to this longstanding open problem. We present a $k$-deletion correcting code that has redundancy $8k\log n +o(\log n)$ and encoding/decoding algorithms of complexity $O(n^{2k+1})$ for constant $k$.

cs.IT↗

Two Deletion Correcting Codes from Indicator Vectors

Construction of capacity achieving deletion correcting codes has been a baffling challenge for decades. A recent breakthrough by Brakensiek $et~al$., alongside novel applications in DNA storage, have reignited the interest in this longstanding open problem. In spite of recent advances, the amount of redundancy in existing codes is still orders of magnitude away from being optimal. In this paper, a novel approach for constructing binary two-deletion correcting codes is proposed. By this approach, parity symbols are computed from indicator vectors (i.e., vectors that indicate the positions of certain patterns) of the encoded message, rather than from the message itself. Most interestingly, the parity symbols and the proof of correctness are a direct generalization of their counterparts in the Varshamov-Tenengolts construction. Our techniques require $7\log(n)+o(\log(n)$ redundant bits to encode an~$n$-bit message, which is near-optimal.

cs.IT↗

Polar Codes for Broadcast Channels with Receiver Message Side Information and Noncausal State Available at the Encoder

In this paper polar codes are proposed for two receiver broadcast channels with receiver message side information (BCSI) and noncausal state available at the encoder, referred to as BCSI with noncausal state for short, where the two receivers know a priori the private messages intended for each other. This channel generalizes BCSI with common message and Gelfand-Pinsker problem and has applications in cellular communication systems. We establish an achievable rate region for BCSI with noncausal state and show that it is strictly larger than the straightforward extension of the Gelfand-Pinsker result. To achieve the established rate region with polar coding, we present polar codes for the general Gelfand-Pinsker problem, which adopts chaining construction and utilizes causal information to pre-transmit the frozen bits. It is also shown that causal information is necessary to pre-transmit the frozen bits. Based on the result of Gelfand-Pinsker problem, we use the chaining construction method to design polar codes for BCSI with noncausal state. The difficulty is that there are multiple chains sharing common information bit indices. To avoid value assignment conflicts, a nontrivial polarization alignment scheme is presented. It is shown that the proposed rate region is tight for degraded BCSI with noncausal state.

cs.IT↗

Joint Network and Gelfand-Pinsker Coding for 3-Receiver Gaussian Broadcast Channels with Receiver Message Side Information

The problem of characterizing the capacity region for Gaussian broadcast channels with receiver message side information appears difficult and remains open for N >= 3 receivers. This paper proposes a joint network and Gelfand-Pinsker coding method for 3-receiver cases. Using the method, we establish a unified inner bound on the capacity region of 3-receiver Gaussian broadcast channels under general message side information configuration. The achievability proof of the inner bound uses an idea of joint interference cancelation, where interference is canceled by using both dirty-paper coding at the encoder and successive decoding at some of the decoders. We show that the inner bound is larger than that achieved by state of the art coding schemes. An outer bound is also established and shown to be tight in 46 out of all 64 possible cases.

cs.IT↗