arXiv subjects

Jin Yuan

Publications and source records attributed to Jin Yuan.

29 records · Page 2Linked to original sources

arXiv2023

AATCT-IDS: A Benchmark Abdominal Adipose Tissue CT Image Dataset for Image Denoising, Semantic Segmentation, and Radiomics Evaluation

Methods: In this study, a benchmark \emph{Abdominal Adipose Tissue CT Image Dataset} (AATTCT-IDS) containing 300 subjects is prepared and published. AATTCT-IDS publics 13,732 raw CT slices, and the researchers individually annotate the subcutaneous and visceral adipose tissue regions of 3,213 of those slices that have the same slice distance to validate denoising methods, train semantic segmentation models, and study radiomics. For different tasks, this paper compares and analyzes the performance of various methods on AATTCT-IDS by combining the visualization results and evaluation data. Thus, verify the research potential of this data set in the above three types of tasks. Results: In the comparative study of image denoising, algorithms using a smoothing strategy suppress mixed noise at the expense of image details and obtain better evaluation data. Methods such as BM3D preserve the original image structure better, although the evaluation data are slightly lower. The results show significant differences among them. In the comparative study of semantic segmentation of abdominal adipose tissue, the segmentation results of adipose tissue by each model show different structural characteristics. Among them, BiSeNet obtains segmentation results only slightly inferior to U-Net with the shortest training time and effectively separates small and isolated adipose tissue. In addition, the radiomics study based on AATTCT-IDS reveals three adipose distributions in the subject population. Conclusion: AATTCT-IDS contains the ground truth of adipose tissue regions in abdominal CT slices. This open-source dataset can attract researchers to explore the multi-dimensional characteristics of abdominal adipose tissue and thus help physicians and patients in clinical practice. AATCT-IDS is freely published for non-commercial purpose at: \url{https://figshare.com/articles/dataset/AATTCT-IDS/23807256}.

eess.IV↗

arXiv2023

Contrast-augmented Diffusion Model with Fine-grained Sequence Alignment for Markup-to-Image Generation

The recently rising markup-to-image generation poses greater challenges as compared to natural image generation, due to its low tolerance for errors as well as the complex sequence and context correlations between markup and rendered image. This paper proposes a novel model named "Contrast-augmented Diffusion Model with Fine-grained Sequence Alignment" (FSA-CDM), which introduces contrastive positive/negative samples into the diffusion model to boost performance for markup-to-image generation. Technically, we design a fine-grained cross-modal alignment module to well explore the sequence similarity between the two modalities for learning robust feature representations. To improve the generalization ability, we propose a contrast-augmented diffusion model to explicitly explore positive and negative samples by maximizing a novel contrastive variational objective, which is mathematically inferred to provide a tighter bound for the model's optimization. Moreover, the context-aware cross attention module is developed to capture the contextual information within markup language during the denoising process, yielding better noise prediction results. Extensive experiments are conducted on four benchmark datasets from different domains, and the experimental results demonstrate the effectiveness of the proposed components in FSA-CDM, significantly exceeding state-of-the-art performance by about 2%-12% DTW improvements. The code will be released at https://github.com/zgj77/FSACDM.

cs.CV↗

arXiv2022

OMSN and FAROS: OCTA Microstructure Segmentation Network and Fully Annotated Retinal OCTA Segmentation Dataset

The lack of efficient segmentation methods and fully-labeled datasets limits the comprehensive assessment of optical coherence tomography angiography (OCTA) microstructures like retinal vessel network (RVN) and foveal avascular zone (FAZ), which are of great value in ophthalmic and systematic diseases evaluation. Here, we introduce an innovative OCTA microstructure segmentation network (OMSN) by combining an encoder-decoder-based architecture with multi-scale skip connections and the split-attention-based residual network ResNeSt, paying specific attention to OCTA microstructural features while facilitating better model convergence and feature representations. The proposed OMSN achieves excellent single/multi-task performances for RVN or/and FAZ segmentation. Especially, the evaluation metrics on multi-task models outperform single-task models on the same dataset. On this basis, a fully annotated retinal OCTA segmentation (FAROS) dataset is constructed semi-automatically, filling the vacancy of a pixel-level fully-labeled OCTA dataset. OMSN multi-task segmentation model retrained with FAROS further certifies its outstanding accuracy for simultaneous RVN and FAZ segmentation.

eess.IV↗

arXiv2022

A Survey of Visual Transformers

Transformer, an attention-based encoder-decoder model, has already revolutionized the field of natural language processing (NLP). Inspired by such significant achievements, some pioneering works have recently been done on employing Transformer-liked architectures in the computer vision (CV) field, which have demonstrated their effectiveness on three fundamental CV tasks (classification, detection, and segmentation) as well as multiple sensory data stream (images, point clouds, and vision-language data). Because of their competitive modeling capabilities, the visual Transformers have achieved impressive performance improvements over multiple benchmarks as compared with modern Convolution Neural Networks (CNNs). In this survey, we have reviewed over one hundred of different visual Transformers comprehensively according to three fundamental CV tasks and different data stream types, where a taxonomy is proposed to organize the representative methods according to their motivations, structures, and application scenarios. Because of their differences on training settings and dedicated vision tasks, we have also evaluated and compared all these existing visual Transformers under different configurations. Furthermore, we have revealed a series of essential but unexploited aspects that may empower such visual Transformers to stand out from numerous architectures, e.g., slack high-level semantic embeddings to bridge the gap between the visual Transformers and the sequential ones. Finally, three promising research directions are suggested for future investment. We will continue to update the latest articles and their released source codes at https://github.com/liuyang-ict/awesome-visual-transformers.

cs.CV↗

arXiv2022

Learning to Learn Domain-invariant Parameters for Domain Generalization

Due to domain shift, deep neural networks (DNNs) usually fail to generalize well on unknown test data in practice. Domain generalization (DG) aims to overcome this issue by capturing domain-invariant representations from source domains. Motivated by the insight that only partial parameters of DNNs are optimized to extract domain-invariant representations, we expect a general model that is capable of well perceiving and emphatically updating such domain-invariant parameters. In this paper, we propose two modules of Domain Decoupling and Combination (DDC) and Domain-invariance-guided Backpropagation (DIGB), which can encourage such general model to focus on the parameters that have a unified optimization direction between pairs of contrastive samples. Our extensive experiments on two benchmarks have demonstrated that our proposed method has achieved state-of-the-art performance with strong generalization capability.

cs.LG↗

arXiv2022

Noise-reducing attention cross fusion learning transformer for histological image classification of osteosarcoma

The degree of malignancy of osteosarcoma and its tendency to metastasize/spread mainly depend on the pathological grade (determined by observing the morphology of the tumor under a microscope). The purpose of this study is to use artificial intelligence to classify osteosarcoma histological images and to assess tumor survival and necrosis, which will help doctors reduce their workload, improve the accuracy of osteosarcoma cancer detection, and make a better prognosis for patients. The study proposes a typical transformer image classification framework by integrating noise reduction convolutional autoencoder and feature cross fusion learning (NRCA-FCFL) to classify osteosarcoma histological images. Noise reduction convolutional autoencoder could well denoise histological images of osteosarcoma, resulting in more pure images for osteosarcoma classification. Moreover, we introduce feature cross fusion learning, which integrates two scale image patches, to sufficiently explore their interactions by using additional classification tokens. As a result, a refined fusion feature is generated, which is fed to the residual neural network for label predictions. We conduct extensive experiments to evaluate the performance of the proposed approach. The experimental results demonstrate that our method outperforms the traditional and deep learning approaches on various evaluation metrics, with an accuracy of 99.17% to support osteosarcoma diagnosis.

eess.IV↗

arXiv2020

An automated and multi-parametric algorithm for objective analysis of meibography images

Meibography is a non-contact imaging technique used by ophthalmologists to assist in the evaluation and diagnosis of meibomian gland dysfunction (MGD). While artificial qualitative analysis of meibography images could lead to low repeatability and efficiency and multi-parametric analysis is demanding to offer more comprehensive information in discovering subtle changes of meibomian glands during MGD progression, we developed an automated and multi-parametric algorithm for objective and quantitative analysis of meibography images. The full architecture of the algorithm can be divided into three steps: (1) segmentation of the tarsal conjunctiva area as the region of interest (ROI); (2) segmentation and identification of glands within the ROI; and (3) quantitative multi-parametric analysis including newly defined gland diameter deformation index (DI), gland tortuosity index (TI), and glands signal index (SI). To evaluate the performance of the automated algorithm, the similarity index (k) and the segmentation error including the false positive rate (r_P) and the false negative rate (r_N) are calculated between the manually defined ground truth and the automatic segmentations of both the ROI and meibomian glands of 15 typical meibography images. The feasibility of the algorithm is demonstrated in analyzing typical meibograhy images.

eess.IV↗

arXiv2019

Uncertainty-Guided Domain Alignment for Layer Segmentation in OCT Images

Automatic and accurate segmentation for retinal and choroidal layers of Optical Coherence Tomography (OCT) is crucial for detection of various ocular diseases. However, because of the variations in different equipments, OCT data obtained from different manufacturers might encounter appearance discrepancy, which could lead to performance fluctuation to a deep neural network. In this paper, we propose an uncertainty-guided domain alignment method to aim at alleviating this problem to transfer discriminative knowledge across distinct domains. We disign a novel uncertainty-guided cross-entropy loss for boosting the performance over areas with high uncertainty. An uncertainty-guided curriculum transfer strategy is developed for the self-training (ST), which regards uncertainty as efficient and effective guidance to optimize the learning process in target domain. Adversarial learning with feature recalibration module (FRM) is applied to transfer informative knowledge from the domain feature spaces adaptively. The experiments on two OCT datasets show that the proposed methods can obtain significant segmentation improvements compared with the baseline models.

cs.CV↗

arXiv2017

TMRT observations of 26 pulsars at 8.6 GHz

Integrated pulse profiles at 8.6~GHz obtained with the Shanghai Tian Ma Radio Telescope (TMRT) are presented for a sample of 26 pulsars. Mean flux densities and pulse width parameters of these pulsars are estimated. For eleven pulsars these are the first high-frequency observations and for a further four, our observations have a better signal-to-noise ratio than previous observations. For one (PSR J0742-2822) the 8.6~GHz profiles differs from previously observed profiles. A comparison of 19 profiles with those at other frequencies shows that in nine cases the separation between the outmost leading and trailing components decreases with frequency, roughly in agreement with radius-to-frequency mapping, whereas in the other ten the separation is nearly constant. Different spectral indices of profile components lead to the variation of integrated pulse profile shapes with frequency. In seven pulsars with multi-component profiles, the spectral indices of the central components are steeper than those of the outer components. For the 12 pulsars with multi-component profiles in the high-frequency sample, we estimate the core width using gaussian fitting and discuss the width-period relationship.

astro-ph.HE↗

arXiv2017

Distributed FD-MIMO: Cellular Evolution for 5G and Beyond

This paper presents the next evolution of FD-MIMO technology for beyond 5G, where antennas of the FD-MIMO system are placed in a distributed manner throughout the cell in a multi-cell deployment scenario. This system, referred to as Distributed FD-MIMO (D-FD-MIMO) system, is capable of providing higher cell average throughput as well as more uniform user experience compared to the conventional FD-MIMO system. System level simulations are performed to evaluate performance. Our results show that the proposed D-FD-MIMO system achieves 1.4-2 times cell average throughput gain compared to the FD-MIMO system. The insights of performance gain are provided. Hardware implementation challenges and potential standards impact are also presented.

cs.IT↗

arXiv2014

Permutation trinomials over finite fields with even characteristic

Permutation polynomials have been a subject of study for a long time and have applications in many areas of science and engineering. However, only a small number of specific classes of permutation polynomials are described in the literature so far. In this paper we present a number of permutation trinomials over finite fields, which are of different forms.

cs.IT↗