arXiv subjects

Jingjie Yeo

Publications and source records attributed to Jingjie Yeo.

9 recordsLinked to original sources

arXiv2025

Path Entropy-driven Design of Solid-State Electrolytes

The development of high-performance solid-state electrolytes (SSEs) has entered a critical stage, where entropy-driven strategies offer transformative potential for enhancing electrochemical properties. By engineering local environments for conductive ions alongside introducing disorder, these approaches can significantly improve conductivity. However, embracing high-entropy designs does not always guarantee improved performance. Current entropy descriptions oversimplify disorder by accounting solely for host framework configurations, neglecting conductive ion-induced disorder, rendering such descriptions incomplete. Herein, we propose path entropy (Sp) as a descriptor that quantifies diffusion pathway diversity, directly capturing diffusional disorder. Combining Markov state model with transition path theory, we reveal the interplay between diffusion pathway diversity of lithium and microscopic local environments in inorganic thiophosphates. Generalizing this path-informative Sp for high-throughput screening, we demonstrate its broad applicability in identifying and designing high-performance SSEs. Our work establishes a critical link between entropy evolution underlying ion conduction and practical entropy-driven design principles.

cond-mat.mtrl-sci↗

arXiv2025

Nanomechanics of Shear Rate-Dependent Stiffening in Micellar Electrically Conductive Polymers

Electrically conducting polymers with mechanical adaptability are essential for flexible electronics, yet most suffer structural degradation under rapid deformation. In this study, multiscale coarse-grained (MSCG) simulations are used to uncover the nanoscale origins of an unusual strain-rate-dependent stiffening in a poly(2-acrylamido-2-methyl-1-propanesulfonic acid) (PAMPSA)-polyaniline (PANI) blend. The self-assembled morphology consists of semi-crystalline PANI-rich micellar cores dispersed in a soft, viscoelastic PAMPSA matrix. At low shear rates, micelles migrate and coalesce into larger aggregates, enhancing local crystallinity and transient entanglement density while dissipating stress through matrix deformation. At high shear rates, micelles cannot reorganize quickly enough, leading to core dissociation and the emergence of highly aligned PANI filaments that directly bear the load, with PAMPSA serving as a weak but extended support phase. These contrasting regimes (densification-driven local alignment versus dissociation-driven global alignment) enable reversible mechanical stiffening across three orders of magnitude in shear rate. The results provide a molecular-level framework for designing solid-state polymers with tunable, rate-adaptive mechanical properties.

cond-mat.soft↗

arXiv2023

Benchmarking Inverse Optimization Algorithms for Materials Design

Machine learning-based inverse materials discovery has attracted enormous attention recently due to its flexibility in dealing with black box models. Yet, many metaheuristic algorithms are not as widely applied to materials discovery applications as machine learning methods. There are ongoing challenges in applying different optimization algorithms to discover crystals with single- or multi-elemental compositions and how these algorithms differ in mining the ideal materials. We comprehensively compare 11 different optimization algorithms for the design of single- and multi-elemental crystals with targeted properties. By maximizing the bulk modulus and minimizing the Fermi energy through perturbing the parameterized elemental composition representations, we estimated the unique counts of elemental compositions, mean density scan of the objectives space, mean objectives and frequency distributed over the materials' representations and objectives. We found that nature-inspired algorithms contain more uncertainties in the defined elemental composition design tasks, which correspond to their dependency on multiple hyperparameters. Runge Kutta optimization (RUN) exhibits higher mean objectives whereas Bayesian optimization (BO) displayed low mean objectives compared with other methods. Combined with materials count and density scan, we propose that BO strives to approximate a more accurate surrogate of the design space by sampling more elemental compositions and hence have lower mean objectives, yet RUN will repeatedly sample the targeted elemental compositions with higher objective values. Our work shed light on the automated digital design of crystals with single- and multi-elemental compositions and is expected to elicit future studies on materials optimization such as composite and alloy design based on specific desired properties.

cond-mat.mtrl-sci↗

arXiv2023

Controlling Biofilm Transport with Porous Metamaterials Designed with Bayesian Learning

Biofilm growth and transport in confined systems frequently occur in natural and engineered systems. Designing customizable engineered porous materials for controllable biofilm transportation properties could significantly improve the rapid utilization of biofilms as engineered living materials for applications in pollution alleviation, material self-healing, energy production, and many more. We combine Bayesian optimization (BO) and individual-based modeling to conduct design optimizations for maximizing different porous materials' (PM) biofilm transportation capability. We first characterize the acquisition function in BO for designing 2-dimensional porous membranes. We use the expected improvement acquisition function for designing lattice metamaterials (LM) and 3-dimensional porous media (3DPM). We find that BO is 92.89% more efficient than the uniform grid search method for LM and 223.04% more efficient for 3DPM. For all three types of structures, the selected characterization simulation tests are in good agreement with the design spaces approximated with Gaussian process regression. All the extracted optimal designs exhibit better biofilm growth and transportability than unconfined space without substrates. Our comparison study shows that PM stimulates biofilm growth by taking up volumetric space and pushing biofilms' upward growth, as evidenced by a 20% increase in bacteria cell numbers in unconfined space compared to porous materials, and 128% more bacteria cells in the target growth region for PM-induced biofilm growth compared with unconfined growth. Our work provides deeper insights into the design of substrates to tune biofilm growth, analyzing the optimization process and characterizing the design space, and understanding biophysical mechanisms governing the growth of biofilms.

physics.bio-ph↗

arXiv2023

Sustainability-Driven Exploration of Topological Material

Topological materials are at the forefront of quantum materials research, offering tremendous potential for next-generation energy and information devices. However, current investigation of these materials remains largely focused on performance and often neglects the crucial aspect of sustainability. Recognizing the pivotal role of sustainability in addressing global pollution, carbon emissions, resource conservation, and ethical labor practices, we present a comprehensive evaluation of topological materials based on their sustainability and environmental impact. Our approach involves a hierarchical analysis encompassing cost, toxicity, energy demands, environmental impact, social implications, and resilience to imports. By applying this framework to over 16,000 topological materials, we establish a sustainable topological materials database. Our endeavor unveils environmental-friendly topological materials candidates which have been previously overlooked, providing insights into their environmental ramifications and feasibility for industrial scalability. The work represents a critical step toward industrial adoption of topological materials, offering the potential for significant technological advancements and broader societal benefits.

cond-mat.mtrl-sci↗

arXiv2023

Elucidating Interfacial Dynamics of Ti-Al Systems Using Molecular Dynamics Simulation and Markov State Modeling

Due to their remarkable mechanical and chemical properties, Ti-Al based materials are attracting considerable interest in numerous fields of engineering, such as automotive, aerospace, and defense. With their low density, high strength, and resistance to corrosion and oxidation, these intermetallic alloys and compound metal-metallic composites have found diverse applications. The present study delves into the interfacial dynamics of these Ti-Al systems, particularly focusing on the behavior of Ti and Al atoms in the presence of TiAl$_3$ grain boundaries under experimental heat treatment conditions. Using a combination of Molecular Dynamics and Markov State Model analyses, we scrutinize the kinetic processes involved in the formation of TiAl$_3$. The Molecular Dynamics simulation indicates that at the early stage of heat treatment, the predominating process is the diffusion of Al atoms towards the Ti surface through the TiAl$_3$ grain boundaries. The Markov State Modeling identifies three distinct dynamic states of Al atoms within the Ti/Al mixture that forms during the process, each exhibiting a unique spatial distribution. Using transition timescales as a qualitative measure of the rapidness of the dynamics, it is observed that the Al dynamics is significantly less rapid near the Ti surface compared to the Al surface. Put together, the results offer a comprehensive understanding of the interfacial dynamics and reveals a three-stage diffusion mechanism. The process initiates with the premelting of Al, proceeds with the prevalent diffusion of Al atoms towards the Ti surface, and eventually ceases as the Ti concentration within the mixture progressively increases. The insights gained from this study could contribute significantly to the control and optimization of manufacturing processes for these high-performing Ti-Al based materials.

cond-mat.mes-hall↗

arXiv2023

Multiscale mechanics of thermal gradient coupled graphene fracture: A molecular dynamics study

The thermo-mechanical coupling mechanism of graphene fracture under thermal gradients possesses rich applications whereas is hard to study due to its coupled non-equilibrium nature. We employ non-equilibrium molecular dynamics to study the fracture of graphene by applying a fixed strain rate under different thermal gradients by employing different potential fields. It is found that for AIREBO and AIREBO-M, the fracture stresses do not strictly follow the positive correlations with the initial crack length. Strain-hardening effects are observed for "REBO-based" potential models of small initial defects, which is interpreted as blunting effect observed for porous graphene. The temperature gradients are observed to not show clear relations with the fracture stresses and crack propagation dynamics. Quantized fracture mechanics verifies our molecular dynamics calculations. We provide a unique perspective that the transverse bond forces share the loading to account for the nonlinear increase of fracture stress with shorter crack length. Anomalous kinetic energy transportation along crack tips is observed for "REBO-based" potential models, which we attribute to the high interatomic attractions in the potential models. The fractures are honored to be more "brittle-liked" carried out using machine learning interatomic potential (MLIP), yet incapable of simulating post-fracture dynamical behaviors. The mechanical responses using MLIP are observed to be not related to temperature gradients. The temperature configuration of equilibration simulation employing the dropout uncertainty neural network potential with a dropout rate of 0.1 is reported to be the most accurate compared with the rest. This work is expected to inspire further investigation of non-equilibrium dynamics in graphene with practical applications in various engineering fields.

cond-mat.mtrl-sci↗

arXiv2023

Predicting the Fracture Propensity of Amorphous Silica Using Molecular Dynamics Simulations and Machine Learning

Amorphous silica ($a-SiO_2$) is a widely used inorganic material. Interestingly, the relationship between the local atomic structures of $a-SiO_2$ and their effects on ductility and fracture is seldom explored. Here, we combine large-scale molecular dynamics simulations and machine learning methods to examine the molecular deformations and fracture mechanisms of $a-SiO_2$. By quenching at high pressures, we demonstrate that densifying $a-SiO_2$ increases the ductility and toughness. Through theoretical analysis and simulation results, we find that changes in local bonding topologies greatly facilitate energy dissipation during plastic deformation, particularly if the coordination numbers decrease. The appearance of fracture can then be accurately located based on the spatial distribution of the atoms. We further observe that the static unstrained structure encodes the propensity for local atomic coordination to change during applied strain, hence a distinct connection can be made between the initial atomic configurations before loading and the final far-from-equilibrium atomic configurations upon fracture. These results are essential for understanding how atomic arrangements strongly influence the mechanical properties and structural features in amorphous solids and will be useful in atomistic design of functional materials.

cond-mat.mes-hall↗

arXiv2022

Computational design of antimicrobial active surfaces via automated Bayesian optimization

Biofilms pose significant problems for engineers in diverse fields, such as marine science, bioenergy, and biomedicine, where effective biofilm control is a long-term goal. The adhesion and surface mechanics of biofilms play crucial roles in generating and removing biofilm. Designing customized nano-surfaces with different surface topologies can alter the adhesive properties to remove biofilms more easily and greatly improve long-term biofilm control. To rapidly design such topologies, we employ individual-based modeling and Bayesian optimization to automate the design process and generate different active surfaces for effective biofilm removal. Our framework successfully generated ideal nano-surfaces for biofilm removal through applied shear and vibration. Densely distributed short pillar topography is the optimal geometry to prevent biofilm formation. Under fluidic shearing, the optimal topography is to sparsely distribute tall, slim, pillar-like structures. When subjected to either vertical or lateral vibrations, thick trapezoidal cones are found to be optimal. Optimizing the vibrational loading indicates a small vibration magnitude with relatively low frequencies is more efficient in removing biofilm. Our results provide insights into various engineering fields that require surface-mediated biofilm control. Our framework can also be applied to more general materials design and optimization.

physics.bio-ph↗