arXiv subjects

Jingxi Li

Publications and source records attributed to Jingxi Li.

36 records · Page 2Linked to original sources

arXiv2023

Multispectral Quantitative Phase Imaging Using a Diffractive Optical Network

As a label-free imaging technique, quantitative phase imaging (QPI) provides optical path length information of transparent specimens for various applications in biology, materials science, and engineering. Multispectral QPI measures quantitative phase information across multiple spectral bands, permitting the examination of wavelength-specific phase and dispersion characteristics of samples. Here, we present the design of a diffractive processor that can all-optically perform multispectral quantitative phase imaging of transparent phase-only objects in a snapshot. Our design utilizes spatially engineered diffractive layers, optimized through deep learning, to encode the phase profile of the input object at a predetermined set of wavelengths into spatial intensity variations at the output plane, allowing multispectral QPI using a monochrome focal plane array. Through numerical simulations, we demonstrate diffractive multispectral processors to simultaneously perform quantitative phase imaging at 9 and 16 target spectral bands in the visible spectrum. These diffractive multispectral processors maintain uniform performance across all the wavelength channels, revealing a decent QPI performance at each target wavelength. The generalization of these diffractive processor designs is validated through numerical tests on unseen objects, including thin Pap smear images. Due to its all-optical processing capability using passive dielectric diffractive materials, this diffractive multispectral QPI processor offers a compact and power-efficient solution for high-throughput quantitative phase microscopy and spectroscopy. This framework can operate at different parts of the electromagnetic spectrum and be used for a wide range of phase imaging and sensing applications.

physics.optics↗

arXiv2023

Virtual histological staining of unlabeled autopsy tissue

Histological examination is a crucial step in an autopsy; however, the traditional histochemical staining of post-mortem samples faces multiple challenges, including the inferior staining quality due to autolysis caused by delayed fixation of cadaver tissue, as well as the resource-intensive nature of chemical staining procedures covering large tissue areas, which demand substantial labor, cost, and time. These challenges can become more pronounced during global health crises when the availability of histopathology services is limited, resulting in further delays in tissue fixation and more severe staining artifacts. Here, we report the first demonstration of virtual staining of autopsy tissue and show that a trained neural network can rapidly transform autofluorescence images of label-free autopsy tissue sections into brightfield equivalent images that match hematoxylin and eosin (H&E) stained versions of the same samples, eliminating autolysis-induced severe staining artifacts inherent in traditional histochemical staining of autopsied tissue. Our virtual H&E model was trained using >0.7 TB of image data and a data-efficient collaboration scheme that integrates the virtual staining network with an image registration network. The trained model effectively accentuated nuclear, cytoplasmic and extracellular features in new autopsy tissue samples that experienced severe autolysis, such as COVID-19 samples never seen before, where the traditional histochemical staining failed to provide consistent staining quality. This virtual autopsy staining technique can also be extended to necrotic tissue, and can rapidly and cost-effectively generate artifact-free H&E stains despite severe autolysis and cell death, also reducing labor, cost and infrastructure requirements associated with the standard histochemical staining.

physics.med-ph↗

arXiv2023

Rapid and stain-free quantification of viral plaque via lens-free holography and deep learning

We present a rapid and stain-free quantitative viral plaque assay using lensfree holographic imaging and deep learning. This cost-effective, compact, and automated device significantly reduces the incubation time needed for traditional plaque assays while preserving their advantages over other virus quantification methods. This device captures ~0.32 Giga-pixel/hour phase information of the objects per test well, covering an area of ~30x30 mm^2, in a label-free manner, eliminating staining entirely. We demonstrated the success of this computational method using vesicular stomatitis virus (VSV), herpes simplex virus (HSV-1) and encephalomyocarditis virus (EMCV). Using a neural network, this stain-free device automatically detected the first cell lysing events due to the VSV viral replication as early as 5 hours after the incubation, and achieved >90% detection rate for the VSV plaque-forming units (PFUs) with 100% specificity in <20 hours, providing major time savings compared to the traditional plaque assays that take at least 48 hours. Similarly, this stain-free device reduced the needed incubation time by ~48 hours for HSV-1 and ~20 hours for EMCV, achieving >90% detection rate with 100% specificity. We also demonstrated that this data-driven plaque assay offers the capability of quantifying the infected area of the cell monolayer, performing automated counting and quantification of PFUs and virus-infected areas over a 10-fold larger dynamic range of virus concentration than standard viral plaque assays. This compact, low-cost, automated PFU quantification device can be broadly used in virology research, vaccine development, and clinical applications.

physics.ins-det↗

arXiv2023

Universal Polarization Transformations: Spatial programming of polarization scattering matrices using a deep learning-designed diffractive polarization transformer

We demonstrate universal polarization transformers based on an engineered diffractive volume, which can synthesize a large set of arbitrarily-selected, complex-valued polarization scattering matrices between the polarization states at different positions within its input and output field-of-views (FOVs). This framework comprises 2D arrays of linear polarizers with diverse angles, which are positioned between isotropic diffractive layers, each containing tens of thousands of diffractive features with optimizable transmission coefficients. We demonstrate that, after its deep learning-based training, this diffractive polarization transformer could successfully implement N_i x N_o = 10,000 different spatially-encoded polarization scattering matrices with negligible error within a single diffractive volume, where N_i and N_o represent the number of pixels in the input and output FOVs, respectively. We experimentally validated this universal polarization transformation framework in the terahertz part of the spectrum by fabricating wire-grid polarizers and integrating them with 3D-printed diffractive layers to form a physical polarization transformer operating at 0.75 mm wavelength. Through this set-up, we demonstrated an all-optical polarization permutation operation of spatially-varying polarization fields, and simultaneously implemented distinct spatially-encoded polarization scattering matrices between the input and output FOVs of a compact diffractive processor that axially spans 200 wavelengths. This framework opens up new avenues for developing novel optical devices for universal polarization control, and may find various applications in, e.g., remote sensing, medical imaging, security, material inspection and machine vision.

physics.optics↗

arXiv2023

Universal Linear Intensity Transformations Using Spatially-Incoherent Diffractive Processors

Under spatially-coherent light, a diffractive optical network composed of structured surfaces can be designed to perform any arbitrary complex-valued linear transformation between its input and output fields-of-view (FOVs) if the total number (N) of optimizable phase-only diffractive features is greater than or equal to ~2 Ni x No, where Ni and No refer to the number of useful pixels at the input and the output FOVs, respectively. Here we report the design of a spatially-incoherent diffractive optical processor that can approximate any arbitrary linear transformation in time-averaged intensity between its input and output FOVs. Under spatially-incoherent monochromatic light, the spatially-varying intensity point spread functon(H) of a diffractive network, corresponding to a given, arbitrarily-selected linear intensity transformation, can be written as H(m,n;m',n')=|h(m,n;m',n')|^2, where h is the spatially-coherent point-spread function of the same diffractive network, and (m,n) and (m',n') define the coordinates of the output and input FOVs, respectively. Using deep learning, supervised through examples of input-output profiles, we numerically demonstrate that a spatially-incoherent diffractive network can be trained to all-optically perform any arbitrary linear intensity transformation between its input and output if N is greater than or equal to ~2 Ni x No. These results constitute the first demonstration of universal linear intensity transformations performed on an input FOV under spatially-incoherent illumination and will be useful for designing all-optical visual processors that can work with incoherent, natural light.

physics.optics↗

arXiv2023

Rapid Sensing of Hidden Objects and Defects using a Single-Pixel Diffractive Terahertz Processor

Terahertz waves offer numerous advantages for the nondestructive detection of hidden objects/defects in materials, as they can penetrate through most optically-opaque materials. However, existing terahertz inspection systems are restricted in their throughput and accuracy (especially for detecting small features) due to their limited speed and resolution. Furthermore, machine vision-based continuous sensing systems that use large-pixel-count imaging are generally bottlenecked due to their digital storage, data transmission and image processing requirements. Here, we report a diffractive processor that rapidly detects hidden defects/objects within a target sample using a single-pixel spectroscopic terahertz detector, without scanning the sample or forming/processing its image. This terahertz processor consists of passive diffractive layers that are optimized using deep learning to modify the spectrum of the terahertz radiation according to the absence/presence of hidden structures or defects. After its fabrication, the resulting diffractive processor all-optically probes the structural information of the sample volume and outputs a spectrum that directly indicates the presence or absence of hidden structures, not visible from outside. As a proof-of-concept, we trained a diffractive terahertz processor to sense hidden defects (including subwavelength features) inside test samples, and evaluated its performance by analyzing the detection sensitivity as a function of the size and position of the unknown defects. We validated its feasibility using a single-pixel terahertz time-domain spectroscopy setup and 3D-printed diffractive layers, successfully detecting hidden defects using pulsed terahertz illumination. This technique will be valuable for various applications, e.g., security screening, biomedical sensing, quality control, anti-counterfeiting measures and cultural heritage protection.

physics.optics↗

arXiv2022

Unidirectional Imaging using Deep Learning-Designed Materials

A unidirectional imager would only permit image formation along one direction, from an input field-of-view (FOV) A to an output FOV B, and in the reverse path, the image formation would be blocked. Here, we report the first demonstration of unidirectional imagers, presenting polarization-insensitive and broadband unidirectional imaging based on successive diffractive layers that are linear and isotropic. These diffractive layers are optimized using deep learning and consist of hundreds of thousands of diffractive phase features, which collectively modulate the incoming fields and project an intensity image of the input onto an output FOV, while blocking the image formation in the reverse direction. After their deep learning-based training, the resulting diffractive layers are fabricated to form a unidirectional imager. As a reciprocal device, the diffractive unidirectional imager has asymmetric mode processing capabilities in the forward and backward directions, where the optical modes from B to A are selectively guided/scattered to miss the output FOV, whereas for the forward direction such modal losses are minimized, yielding an ideal imaging system between the input and output FOVs. Although trained using monochromatic illumination, the diffractive unidirectional imager maintains its functionality over a large spectral band and works under broadband illumination. We experimentally validated this unidirectional imager using terahertz radiation, very well matching our numerical results. Using the same deep learning-based design strategy, we also created a wavelength-selective unidirectional imager, where two unidirectional imaging operations, in reverse directions, are multiplexed through different illumination wavelengths. Diffractive unidirectional imaging using structured materials will have numerous applications in e.g., security, defense, telecommunications and privacy protection.

physics.optics↗

arXiv2022

Massively Parallel Universal Linear Transformations using a Wavelength-Multiplexed Diffractive Optical Network

We report deep learning-based design of a massively parallel broadband diffractive neural network for all-optically performing a large group of arbitrarily-selected, complex-valued linear transformations between an input and output field-of-view, each with N_i and N_o pixels, respectively. This broadband diffractive processor is composed of N_w wavelength channels, each of which is uniquely assigned to a distinct target transformation. A large set of arbitrarily-selected linear transformations can be individually performed through the same diffractive network at different illumination wavelengths, either simultaneously or sequentially (wavelength scanning). We demonstrate that such a broadband diffractive network, regardless of its material dispersion, can successfully approximate N_w unique complex-valued linear transforms with a negligible error when the number of diffractive neurons (N) in its design matches or exceeds 2 x N_w x N_i x N_o. We further report that the spectral multiplexing capability (N_w) can be increased by increasing N; our numerical analyses confirm these conclusions for N_w > 180, which can be further increased to e.g., ~2000 depending on the upper bound of the approximation error. Massively parallel, wavelength-multiplexed diffractive networks will be useful for designing high-throughput intelligent machine vision systems and hyperspectral processors that can perform statistical inference and analyze objects/scenes with unique spectral properties.

cs.NE↗

arXiv2022

Super-resolution image display using diffractive decoders

High-resolution synthesis/projection of images over a large field-of-view (FOV) is hindered by the restricted space-bandwidth-product (SBP) of wavefront modulators. We report a deep learning-enabled diffractive display design that is based on a jointly-trained pair of an electronic encoder and a diffractive optical decoder to synthesize/project super-resolved images using low-resolution wavefront modulators. The digital encoder, composed of a trained convolutional neural network (CNN), rapidly pre-processes the high-resolution images of interest so that their spatial information is encoded into low-resolution (LR) modulation patterns, projected via a low SBP wavefront modulator. The diffractive decoder processes this LR encoded information using thin transmissive layers that are structured using deep learning to all-optically synthesize and project super-resolved images at its output FOV. Our results indicate that this diffractive image display can achieve a super-resolution factor of ~4, demonstrating a ~16-fold increase in SBP. We also experimentally validate the success of this diffractive super-resolution display using 3D-printed diffractive decoders that operate at the THz spectrum. This diffractive image decoder can be scaled to operate at visible wavelengths and inspire the design of large FOV and high-resolution displays that are compact, low-power, and computationally efficient.

physics.optics↗

arXiv2022

Polarization Multiplexed Diffractive Computing: All-Optical Implementation of a Group of Linear Transformations Through a Polarization-Encoded Diffractive Network

Research on optical computing has recently attracted significant attention due to the transformative advances in machine learning. Among different approaches, diffractive optical networks composed of spatially-engineered transmissive surfaces have been demonstrated for all-optical statistical inference and performing arbitrary linear transformations using passive, free-space optical layers. Here, we introduce a polarization multiplexed diffractive processor to all-optically perform multiple, arbitrarily-selected linear transformations through a single diffractive network trained using deep learning. In this framework, an array of pre-selected linear polarizers is positioned between trainable transmissive diffractive materials that are isotropic, and different target linear transformations (complex-valued) are uniquely assigned to different combinations of input/output polarization states. The transmission layers of this polarization multiplexed diffractive network are trained and optimized via deep learning and error-backpropagation by using thousands of examples of the input/output fields corresponding to each one of the complex-valued linear transformations assigned to different input/output polarization combinations. Our results and analysis reveal that a single diffractive network can successfully approximate and all-optically implement a group of arbitrarily-selected target transformations with a negligible error when the number of trainable diffractive features/neurons (N) approaches N_p x N_i x N_o, where N_i and N_o represent the number of pixels at the input and output fields-of-view, respectively, and N_p refers to the number of unique linear transformations assigned to different input/output polarization combinations. This polarization-multiplexed all-optical diffractive processor can find various applications in optical computing and polarization-based machine vision tasks.

physics.optics↗

arXiv2021

Label-free virtual HER2 immunohistochemical staining of breast tissue using deep learning

The immunohistochemical (IHC) staining of the human epidermal growth factor receptor 2 (HER2) biomarker is widely practiced in breast tissue analysis, preclinical studies and diagnostic decisions, guiding cancer treatment and investigation of pathogenesis. HER2 staining demands laborious tissue treatment and chemical processing performed by a histotechnologist, which typically takes one day to prepare in a laboratory, increasing analysis time and associated costs. Here, we describe a deep learning-based virtual HER2 IHC staining method using a conditional generative adversarial network that is trained to rapidly transform autofluorescence microscopic images of unlabeled/label-free breast tissue sections into bright-field equivalent microscopic images, matching the standard HER2 IHC staining that is chemically performed on the same tissue sections. The efficacy of this virtual HER2 staining framework was demonstrated by quantitative analysis, in which three board-certified breast pathologists blindly graded the HER2 scores of virtually stained and immunohistochemically stained HER2 whole slide images (WSIs) to reveal that the HER2 scores determined by inspecting virtual IHC images are as accurate as their immunohistochemically stained counterparts. A second quantitative blinded study performed by the same diagnosticians further revealed that the virtually stained HER2 images exhibit a comparable staining quality in the level of nuclear detail, membrane clearness, and absence of staining artifacts with respect to their immunohistochemically stained counterparts. This virtual HER2 staining framework bypasses the costly, laborious, and time-consuming IHC staining procedures in laboratory, and can be extended to other types of biomarkers to accelerate the IHC tissue staining used in life sciences and biomedical workflow.

q-bio.QM↗

arXiv2021

Computational Imaging Without a Computer: Seeing Through Random Diffusers at the Speed of Light

Imaging through diffusers presents a challenging problem with various digital image reconstruction solutions demonstrated to date using computers. We present a computer-free, all-optical image reconstruction method to see through random diffusers at the speed of light. Using deep learning, a set of diffractive surfaces are designed/trained to all-optically reconstruct images of objects that are covered by random phase diffusers. We experimentally demonstrated this concept using coherent THz illumination and all-optically reconstructed objects distorted by unknown, random diffusers, never used during training. Unlike digital methods, all-optical diffractive reconstructions do not require power except for the illumination light. This diffractive solution to see through diffusers can be extended to other wavelengths, and might fuel various applications in biomedical imaging, astronomy, atmospheric sciences, oceanography, security, robotics, among others.

physics.optics↗

arXiv2021

Spectrally-Encoded Single-Pixel Machine Vision Using Diffractive Networks

3D engineering of matter has opened up new avenues for designing systems that can perform various computational tasks through light-matter interaction. Here, we demonstrate the design of optical networks in the form of multiple diffractive layers that are trained using deep learning to transform and encode the spatial information of objects into the power spectrum of the diffracted light, which are used to perform optical classification of objects with a single-pixel spectroscopic detector. Using a time-domain spectroscopy setup with a plasmonic nanoantenna-based detector, we experimentally validated this machine vision framework at terahertz spectrum to optically classify the images of handwritten digits by detecting the spectral power of the diffracted light at ten distinct wavelengths, each representing one class/digit. We also report the coupling of this spectral encoding achieved through a diffractive optical network with a shallow electronic neural network, separately trained to reconstruct the images of handwritten digits based on solely the spectral information encoded in these ten distinct wavelengths within the diffracted light. These reconstructed images demonstrate task-specific image decompression and can also be cycled back as new inputs to the same diffractive network to improve its optical object classification. This unique machine vision framework merges the power of deep learning with the spatial and spectral processing capabilities of diffractive networks, and can also be extended to other spectral-domain measurement systems to enable new 3D imaging and sensing modalities integrated with spectrally encoded classification tasks performed through diffractive optical networks.

cs.CV↗

arXiv2020

Terahertz Pulse Shaping Using Diffractive Surfaces

Recent advances in deep learning have been providing non-intuitive solutions to various inverse problems in optics. At the intersection of machine learning and optics, diffractive networks merge wave-optics with deep learning to design task-specific elements to all-optically perform various tasks such as object classification and machine vision. Here, we present a diffractive network, which is used to shape an arbitrary broadband pulse into a desired optical waveform, forming a compact pulse engineering system. We experimentally demonstrate the synthesis of square pulses with different temporal-widths by manufacturing passive diffractive layers that collectively control both the spectral amplitude and the phase of an input terahertz pulse. Our results constitute the first demonstration of direct pulse shaping in terahertz spectrum, where a complex-valued spectral modulation function directly acts on terahertz frequencies. Furthermore, a Lego-like physical transfer learning approach is presented to illustrate pulse-width tunability by replacing part of an existing network with newly trained diffractive layers, demonstrating its modularity. This learning-based diffractive pulse engineering framework can find broad applications in e.g., communications, ultra-fast imaging and spectroscopy.

physics.optics↗

arXiv2020

Ensemble learning of diffractive optical networks

A plethora of research advances have emerged in the fields of optics and photonics that benefit from harnessing the power of machine learning. Specifically, there has been a revival of interest in optical computing hardware, due to its potential advantages for machine learning tasks in terms of parallelization, power efficiency and computation speed. Diffractive Deep Neural Networks (D2NNs) form such an optical computing framework, which benefits from deep learning-based design of successive diffractive layers to all-optically process information as the input light diffracts through these passive layers. D2NNs have demonstrated success in various tasks, including e.g., object classification, spectral-encoding of information, optical pulse shaping and imaging, among others. Here, we significantly improve the inference performance of diffractive optical networks using feature engineering and ensemble learning. After independently training a total of 1252 D2NNs that were diversely engineered with a variety of passive input filters, we applied a pruning algorithm to select an optimized ensemble of D2NNs that collectively improve their image classification accuracy. Through this pruning, we numerically demonstrated that ensembles of N=14 and N=30 D2NNs achieve blind testing accuracies of 61.14% and 62.13%, respectively, on the classification of CIFAR-10 test images, providing an inference improvement of >16% compared to the average performance of the individual D2NNs within each ensemble. These results constitute the highest inference accuracies achieved to date by any diffractive optical neural network design on the same dataset and might provide a significant leapfrog to extend the application space of diffractive optical image classification and machine vision systems.

cs.NE↗

arXiv2020

Temporal Pulses Driven Spiking Neural Network for Fast Object Recognition in Autonomous Driving

Accurate real-time object recognition from sensory data has long been a crucial and challenging task for autonomous driving. Even though deep neural networks (DNNs) have been successfully applied in this area, most existing methods still heavily rely on the pre-processing of the pulse signals derived from LiDAR sensors, and therefore introduce additional computational overhead and considerable latency. In this paper, we propose an approach to address the object recognition problem directly with raw temporal pulses utilizing the spiking neural network (SNN). Being evaluated on various datasets (including Sim LiDAR, KITTI and DVS-barrel) derived from LiDAR and dynamic vision sensor (DVS), our proposed method has shown comparable performance as the state-of-the-art methods, while achieving remarkable time efficiency. It highlights the SNN's great potentials in autonomous driving and related applications. To the best of our knowledge, this is the first attempt to use SNN to directly perform object recognition on raw temporal pulses.

cs.CV↗

arXiv2020

Digital synthesis of histological stains using micro-structured and multiplexed virtual staining of label-free tissue

Histological staining is a vital step used to diagnose various diseases and has been used for more than a century to provide contrast to tissue sections, rendering the tissue constituents visible for microscopic analysis by medical experts. However, this process is time-consuming, labor-intensive, expensive and destructive to the specimen. Recently, the ability to virtually-stain unlabeled tissue sections, entirely avoiding the histochemical staining step, has been demonstrated using tissue-stain specific deep neural networks. Here, we present a new deep learning-based framework which generates virtually-stained images using label-free tissue, where different stains are merged following a micro-structure map defined by the user. This approach uses a single deep neural network that receives two different sources of information at its input: (1) autofluorescence images of the label-free tissue sample, and (2) a digital staining matrix which represents the desired microscopic map of different stains to be virtually generated at the same tissue section. This digital staining matrix is also used to virtually blend existing stains, digitally synthesizing new histological stains. We trained and blindly tested this virtual-staining network using unlabeled kidney tissue sections to generate micro-structured combinations of Hematoxylin and Eosin (H&E), Jones silver stain, and Masson's Trichrome stain. Using a single network, this approach multiplexes virtual staining of label-free tissue with multiple types of stains and paves the way for synthesizing new digital histological stains that can be created on the same tissue cross-section, which is currently not feasible with standard histochemical staining methods.

eess.IV↗

arXiv2019

Class-specific Differential Detection in Diffractive Optical Neural Networks Improves Inference Accuracy

Diffractive deep neural networks have been introduced earlier as an optical machine learning framework that uses task-specific diffractive surfaces designed by deep learning to all-optically perform inference, achieving promising performance for object classification and imaging. Here we demonstrate systematic improvements in diffractive optical neural networks based on a differential measurement technique that mitigates the non-negativity constraint of light intensity. In this scheme, each class is assigned to a separate pair of photodetectors, behind a diffractive network, and the class inference is made by maximizing the normalized signal difference between the detector pairs. Moreover, by utilizing the inherent parallelization capability of optical systems, we reduced the signal coupling between the positive and negative detectors of each class by dividing their optical path into two jointly-trained diffractive neural networks that work in parallel. We further made use of this parallelization approach, and divided individual classes among multiple jointly-trained differential diffractive neural networks. Using this class-specific differential detection in jointly-optimized diffractive networks, our simulations achieved testing accuracies of 98.52%, 91.48% and 50.82% for MNIST, Fashion-MNIST and grayscale CIFAR-10 datasets, respectively. Similar to ensemble methods practiced in machine learning, we also independently-optimized multiple differential diffractive networks that optically project their light onto a common detector plane, and achieved testing accuracies of 98.59%, 91.06% and 51.44% for MNIST, Fashion-MNIST and grayscale CIFAR-10, respectively. Through these systematic advances in designing diffractive neural networks, the reported classification accuracies set the state-of-the-art for an all-optical neural network design.

cs.NE↗