arXiv subjects

Jingxin Liu

Publications and source records attributed to Jingxin Liu.

32 records · Page 2Linked to original sources

arXiv2022

Geometry-aware Single-image Full-body Human Relighting

Single-image human relighting aims to relight a target human under new lighting conditions by decomposing the input image into albedo, shape and lighting. Although plausible relighting results can be achieved, previous methods suffer from both the entanglement between albedo and lighting and the lack of hard shadows, which significantly decrease the realism. To tackle these two problems, we propose a geometry-aware single-image human relighting framework that leverages single-image geometry reconstruction for joint deployment of traditional graphics rendering and neural rendering techniques. For the de-lighting, we explore the shortcomings of UNet architecture and propose a modified HRNet, achieving better disentanglement between albedo and lighting. For the relighting, we introduce a ray tracing-based per-pixel lighting representation that explicitly models high-frequency shadows and propose a learning-based shading refinement module to restore realistic shadows (including hard cast shadows) from the ray-traced shading maps. Our framework is able to generate photo-realistic high-frequency shadows such as cast shadows under challenging lighting conditions. Extensive experiments demonstrate that our proposed method outperforms previous methods on both synthetic and real images.

cs.CV↗

arXiv2022

Mitosis domain generalization in histopathology images -- The MIDOG challenge

The density of mitotic figures within tumor tissue is known to be highly correlated with tumor proliferation and thus is an important marker in tumor grading. Recognition of mitotic figures by pathologists is known to be subject to a strong inter-rater bias, which limits the prognostic value. State-of-the-art deep learning methods can support the expert in this assessment but are known to strongly deteriorate when applied in a different clinical environment than was used for training. One decisive component in the underlying domain shift has been identified as the variability caused by using different whole slide scanners. The goal of the MICCAI MIDOG 2021 challenge has been to propose and evaluate methods that counter this domain shift and derive scanner-agnostic mitosis detection algorithms. The challenge used a training set of 200 cases, split across four scanning systems. As a test set, an additional 100 cases split across four scanning systems, including two previously unseen scanners, were given. The best approaches performed on an expert level, with the winning algorithm yielding an F_1 score of 0.748 (CI95: 0.704-0.781). In this paper, we evaluate and compare the approaches that were submitted to the challenge and identify methodological factors contributing to better performance.

eess.IV↗

arXiv2021

Domain Adaptive Cascade R-CNN for MItosis DOmain Generalization (MIDOG) Challenge

We present a summary of the domain adaptive cascade R-CNN method for mitosis detection of digital histopathology images. By comprehensive data augmentation and adapting existing popular detection architecture, our proposed method has achieved an F1 score of 0.7500 on the preliminary test set in MItosis DOmain Generalization (MIDOG) Challenge at MICCAI 2021.

eess.IV↗

arXiv2020

K-Core based Temporal Graph Convolutional Network for Dynamic Graphs

Graph representation learning is a fundamental task in various applications that strives to learn low-dimensional embeddings for nodes that can preserve graph topology information. However, many existing methods focus on static graphs while ignoring evolving graph patterns. Inspired by the success of graph convolutional networks(GCNs) in static graph embedding, we propose a novel k-core based temporal graph convolutional network, the CTGCN, to learn node representations for dynamic graphs. In contrast to previous dynamic graph embedding methods, CTGCN can preserve both local connective proximity and global structural similarity while simultaneously capturing graph dynamics. In the proposed framework, the traditional graph convolution is generalized into two phases, feature transformation and feature aggregation, which gives the CTGCN more flexibility and enables the CTGCN to learn connective and structural information under the same framework. Experimental results on 7 real-world graphs demonstrate that the CTGCN outperforms existing state-of-the-art graph embedding methods in several tasks, including link prediction and structural role classification. The source code of this work can be obtained from \url{https://github.com/jhljx/CTGCN}.

cs.LG↗

arXiv2020

Beam Measurements of the Tianlai Dish Radio Telescope using an Unmanned Aerial Vehicle

Precision measurement of the beam pattern of an antenna is very important for many applications. While traditionally such measurement is often made in a microwave anechoic chamber or at a test range, measurement using an unmanned aerial vehicle offers a number of advantages: the measurement can be made for the assembled antenna on site, thus reflecting the actual characteristics of the antenna of interest, and more importantly, it can be performed for larger antennas which cannot be steered or easily measured using the anechoic chamber and test range. Here we report our beam measurement experiment with UAV for a 6 meter dish used in the Tianlai array, which is a radio astronomy experiment. Due to the dish's small collecting area, calibration with an astronomical source only allows for determining the antenna beam pattern over a very limited angular range. We describe in detail the setup of the experiment, the components of the signal transmitting system, the design of the flight path and the procedure for data processing. We find the UAV measurement of the beam pattern agrees very well with the astronomical source measurement in the main lobe, but the UAV measurement can be extended to the fourth side lobe. The measured position and width of each lobe also shows good agreement with electromagnetic field simulation. This UAV-based approach of beam pattern measurement is flexible and inexpensive, and the technique may also be applied to other experiments.

astro-ph.IM↗

arXiv2020

Class-Aware Domain Adaptation for Improving Adversarial Robustness

Recent works have demonstrated convolutional neural networks are vulnerable to adversarial examples, i.e., inputs to machine learning models that an attacker has intentionally designed to cause the models to make a mistake. To improve the adversarial robustness of neural networks, adversarial training has been proposed to train networks by injecting adversarial examples into the training data. However, adversarial training could overfit to a specific type of adversarial attack and also lead to standard accuracy drop on clean images. To this end, we propose a novel Class-Aware Domain Adaptation (CADA) method for adversarial defense without directly applying adversarial training. Specifically, we propose to learn domain-invariant features for adversarial examples and clean images via a domain discriminator. Furthermore, we introduce a class-aware component into the discriminator to increase the discriminative power of the network for adversarial examples. We evaluate our newly proposed approach using multiple benchmark datasets. The results demonstrate that our method can significantly improve the state-of-the-art of adversarial robustness for various attacks and maintain high performances on clean images.

cs.CV↗

arXiv2020

Single-cell entropy to quantify the cellular transcription from single-cell RNA-seq data

We present the use of single-cell entropy (scEntropy) to measure the order of the cellular transcriptome profile from single-cell RNA-seq data, which leads to a method of unsupervised cell type classification through scEntropy followed by the Gaussian mixture model (scEGMM). scEntropy is straightforward in defining an intrinsic transcriptional state of a cell. scEGMM is a coherent method of cell type classification that includes no parameters and no clustering; however, it is comparable to existing machine learning-based methods in benchmarking studies and facilitates biological interpretation.

q-bio.QM↗

arXiv2019

An anomaly prediction framework for financial IT systems using hybrid machine learning methods

In financial field, a robust software system is of vital importance to ensure the smooth operation of financial transactions. However, many financial corporations still depend on operators to identify and eliminate the system failures when financial software systems break down. This traditional operation method is time consuming and extremely inefficient. To improve the efficiency and accuracy of system failure detection and thereby reduce the impact of system failures on financial services, we propose a novel machine learning-based framework to predict the occurrence of system exceptions and failures in a financial software system. In particular, we first extract rich information from system logs and eliminate noises in the data. Then the cleaned data is leveraged as the input of our proposed anomaly prediction framework which consists of three modules: key performance indicator(KPI) data prediction module, anomaly identification module and severity classification module. Notably, we design a hierarchical architecture of alarm classifiers and try to alleviate the influence of class-imbalance problem on the overall performance. Empirically, the experimental results demonstrate the superior performance of our proposed method on a real-world financial software system log data set.

cs.LG↗

arXiv2019

Dual Adaptive Pyramid Network for Cross-Stain Histopathology Image Segmentation

Supervised semantic segmentation normally assumes the test data being in a similar data domain as the training data. However, in practice, the domain mismatch between the training and unseen data could lead to a significant performance drop. Obtaining accurate pixel-wise label for images in different domains is tedious and labor intensive, especially for histopathology images. In this paper, we propose a dual adaptive pyramid network (DAPNet) for histopathological gland segmentation adapting from one stain domain to another. We tackle the domain adaptation problem on two levels: 1) the image-level considers the differences of image color and style; 2) the feature-level addresses the spatial inconsistency between two domains. The two components are implemented as domain classifiers with adversarial training. We evaluate our new approach using two gland segmentation datasets with H&E and DAB-H stains respectively. The extensive experiments and ablation study demonstrate the effectiveness of our approach on the domain adaptive segmentation task. We show that the proposed approach performs favorably against other state-of-the-art methods.

cs.CV↗

arXiv2019

Pathological Myopic Image Analysis with Transfer Learning

We present a summary of transfer learning based methods for several challenging myopic fundus image analysis tasks including classification of pathological and non-pathological myopia,localisation of fovea,and segmentation of optic disc.By adapting existing popular deep learning architectures,our proposed methods have achieved 1st and 2nd place in several tasks at the Pathologic Myopia Challenge held at ISBI2019.

eess.IV↗

arXiv2019

Learning Deep Image Priors for Blind Image Denoising

Image denoising is the process of removing noise from noisy images, which is an image domain transferring task, i.e., from a single or several noise level domains to a photo-realistic domain. In this paper, we propose an effective image denoising method by learning two image priors from the perspective of domain alignment. We tackle the domain alignment on two levels. 1) the feature-level prior is to learn domain-invariant features for corrupted images with different level noise; 2) the pixel-level prior is used to push the denoised images to the natural image manifold. The two image priors are based on $\mathcal{H}$-divergence theory and implemented by learning classifiers in adversarial training manners. We evaluate our approach on multiple datasets. The results demonstrate the effectiveness of our approach for robust image denoising on both synthetic and real-world noisy images. Furthermore, we show that the feature-level prior is capable of alleviating the discrepancy between different level noise. It can be used to improve the blind denoising performance in terms of distortion measures (PSNR and SSIM), while pixel-level prior can effectively improve the perceptual quality to ensure the realistic outputs, which is further validated by subjective evaluation.

eess.IV↗

arXiv2019

Look, Investigate, and Classify: A Deep Hybrid Attention Method for Breast Cancer Classification

One issue with computer based histopathology image analysis is that the size of the raw image is usually very large. Taking the raw image as input to the deep learning model would be computationally expensive while resizing the raw image to low resolution would incur information loss. In this paper, we present a novel deep hybrid attention approach to breast cancer classification. It first adaptively selects a sequence of coarse regions from the raw image by a hard visual attention algorithm, and then for each such region it is able to investigate the abnormal parts based on a soft-attention mechanism. A recurrent network is then built to make decisions to classify the image region and also to predict the location of the image region to be investigated at the next time step. As the region selection process is non-differentiable, we optimize the whole network through a reinforcement approach to learn an optimal policy to classify the regions. Based on this novel Look, Investigate and Classify approach, we only need to process a fraction of the pixels in the raw image resulting in significant saving in computational resources without sacrificing performances. Our approach is evaluated on a public breast cancer histopathology database, where it demonstrates superior performance to the state-of-the-art deep learning approaches, achieving around 96\% classification accuracy while only 15% of raw pixels are used.

cs.CV↗

arXiv2018

Outline Objects using Deep Reinforcement Learning

Image segmentation needs both local boundary position information and global object context information. The performance of the recent state-of-the-art method, fully convolutional networks, reaches a bottleneck due to the neural network limit after balancing between the two types of information simultaneously in an end-to-end training style. To overcome this problem, we divide the semantic image segmentation into temporal subtasks. First, we find a possible pixel position of some object boundary; then trace the boundary at steps within a limited length until the whole object is outlined. We present the first deep reinforcement learning approach to semantic image segmentation, called DeepOutline, which outperforms other algorithms in Coco detection leaderboard in the middle and large size person category in Coco val2017 dataset. Meanwhile, it provides an insight into a divide and conquer way by reinforcement learning on computer vision problems.

cs.CV↗

arXiv2018

An End-to-End Deep Learning Histochemical Scoring System for Breast Cancer Tissue Microarray

One of the methods for stratifying different molecular classes of breast cancer is the Nottingham Prognostic Index Plus (NPI+) which uses breast cancer relevant biomarkers to stain tumour tissues prepared on tissue microarray (TMA). To determine the molecular class of the tumour, pathologists will have to manually mark the nuclei activity biomarkers through a microscope and use a semi-quantitative assessment method to assign a histochemical score (H-Score) to each TMA core. Manually marking positively stained nuclei is a time consuming, imprecise and subjective process which will lead to inter-observer and intra-observer discrepancies. In this paper, we present an end-to-end deep learning system which directly predicts the H-Score automatically. Our system imitates the pathologists' decision process and uses one fully convolutional network (FCN) to extract all nuclei region (tumour and non-tumour), a second FCN to extract tumour nuclei region, and a multi-column convolutional neural network which takes the outputs of the first two FCNs and the stain intensity description image as input and acts as the high-level decision making mechanism to directly output the H-Score of the input TMA image. To the best of our knowledge, this is the first end-to-end system that takes a TMA image as input and directly outputs a clinical score. We will present experimental results which demonstrate that the H-Scores predicted by our model have very high and statistically significant correlation with experienced pathologists' scores and that the H-Score discrepancy between our algorithm and the pathologists is on par with the inter-subject discrepancy between the pathologists.

cs.CV↗