arXiv subjects

Jingyun Yang

Publications and source records attributed to Jingyun Yang.

At least 19 recordsLinked to original sources

arXiv2026

Accelerating Scientific Research with Gemini in the Real-World

We present an extension and comprehensive real-world validation of Co-Scientist, a Gemini-based multi-agent system designed to accelerate end-to-end scientific research across hypothesis generation, experimentation, and manuscript generation. Moving beyond in silico hypothesis generation, this specialized configuration transitions Co-Scientist into an execution-grounded research partner advancing closed-loop scientific workflows across materials science, biology, and computer science. In materials science, Co-Scientist interfaced with a semi-automated chemical vapor deposition reactor to design a safe precursor route for MXenes; experimental execution produced a lamellar 2D material sharing key structural similarities with the Ti3C2Tx MXene lattice, although further experiments are needed to confirm the atomic structure. Leveraging Gemini 3 Deep Think for rapid, lab-in-the-loop execution, it also tailored growth recipes to laboratory constraints in minutes, enabling single-attempt growth of monolayer MoS2, MoSe2, and WS2 semiconductors. In biology, Co-Scientist predicted emergent swarming phenotypes of engineered E. coli across inducer (IPTG) gradients from sparse imaging data, quantitatively matching unpublished wet-lab morphological measurements. In computer science, Co-Scientist autonomously discovered an inference-time scaling architecture that outperformed six frontier models on HealthBench (Hard and Professional) while reducing potential clinical harm under blinded physician evaluation. Finally, a double-blind study of end-to-end generated papers with 30 domain experts across 450 reviews demonstrates that Co-Scientist's reliability modules reduce hallucination and plagiarism while improving research safety. Together, these results demonstrate progress toward closed-loop multi-agent scientific AI systems capable of accelerating real-world scientific discovery.

cs.AI↗

arXiv2026

High-Fidelity Medical Shape Generation via Skeletal Latent Diffusion

Anatomy shape modeling is a fundamental problem in medical data analysis. However, the geometric complexity and topological variability of anatomical structures pose significant challenges to accurate anatomical shape generation. In this work, we propose a skeletal latent diffusion framework that explicitly incorporates structural priors for efficient and high-fidelity medical shape generation. We introduce a shape auto-encoder in which the encoder captures global geometric information through a differentiable skeletonization module and aggregates local surface features into shape latents, while the decoder predicts the corresponding implicit fields over sparsely sampled coordinates. New shapes are generated via a latent-space diffusion model, followed by neural implicit decoding and mesh extraction. To address the limited availability of medical shape data, we construct a large-scale dataset, \textit{MedSDF}, comprising surface point clouds and corresponding signed distance fields across multiple anatomical categories. Extensive experiments on MedSDF and vessel datasets demonstrate that the proposed method achieves superior reconstruction and generation quality while maintaining a higher computational efficiency compared with existing approaches. Code is available at: https://github.com/wlsdzyzl/meshage.

cs.CV↗

arXiv2025

Learning What is Worth Learning: Active and Sequential Domain Adaptation for Multi-modal Gross Tumor Volume Segmentation

Accurate gross tumor volume segmentation on multi-modal medical data is critical for radiotherapy planning in nasopharyngeal carcinoma and glioblastoma. Recent advances in deep neural networks have brought promising results in medical image segmentation, leading to an increasing demand for labeled data. Since labeling medical images is time-consuming and labor-intensive, active learning has emerged as a solution to reduce annotation costs by selecting the most informative samples to label and adapting high-performance models with as few labeled samples as possible. Previous active domain adaptation (ADA) methods seek to minimize sample redundancy by selecting samples that are farthest from the source domain. However, such one-off selection can easily cause negative transfer, and access to source medical data is often limited. Moreover, the query strategy for multi-modal medical data remains unexplored. In this work, we propose an active and sequential domain adaptation framework for dynamic multi-modal sample selection in ADA. We derive a query strategy to prioritize labeling and training on the most valuable samples based on their informativeness and representativeness. Empirical validation on diverse gross tumor volume segmentation tasks demonstrates that our method achieves favorable segmentation performance, significantly outperforming state-of-the-art ADA methods. Code is available at the git repository: \href{https://github.com/Hiyoochan/mmActS}{mmActS}.

cs.CV↗

arXiv2025

Understanding Knowledge Transferability for Transfer Learning: A Survey

Transfer learning has become an essential paradigm in artificial intelligence, enabling the transfer of knowledge from a source task to improve performance on a target task. This approach, particularly through techniques such as pretraining and fine-tuning, has seen significant success in fields like computer vision and natural language processing. However, despite its widespread use, how to reliably assess the transferability of knowledge remains a challenge. Understanding the theoretical underpinnings of each transferability metric is critical for ensuring the success of transfer learning. In this survey, we provide a unified taxonomy of transferability metrics, categorizing them based on transferable knowledge types and measurement granularity. This work examines the various metrics developed to evaluate the potential of source knowledge for transfer learning and their applicability across different learning paradigms emphasizing the need for careful selection of these metrics. By offering insights into how different metrics work under varying conditions, this survey aims to guide researchers and practitioners in selecting the most appropriate metric for specific applications, contributing to more efficient, reliable, and trustworthy AI systems. Finally, we discuss some open challenges in this field and propose future research directions to further advance the application of transferability metrics in trustworthy transfer learning.

cs.LG↗

arXiv2025

CUPID: Curating Data your Robot Loves with Influence Functions

In robot imitation learning, policy performance is tightly coupled with the quality and composition of the demonstration data. Yet, developing a precise understanding of how individual demonstrations contribute to downstream outcomes - such as closed-loop task success or failure - remains a persistent challenge. We propose CUPID, a robot data curation method based on a novel influence function-theoretic formulation for imitation learning policies. Given a set of evaluation rollouts, CUPID estimates the influence of each training demonstration on the policy's expected return. This enables ranking and selection of demonstrations according to their impact on the policy's closed-loop performance. We use CUPID to curate data by 1) filtering out training demonstrations that harm policy performance and 2) subselecting newly collected trajectories that will most improve the policy. Extensive simulated and hardware experiments show that our approach consistently identifies which data drives test-time performance. For example, training with less than 33% of curated data can yield state-of-the-art diffusion policies on the simulated RoboMimic benchmark, with similar gains observed in hardware. Furthermore, hardware experiments show that our method can identify robust strategies under distribution shift, isolate spurious correlations, and even enhance the post-training of generalist robot policies. Videos and code are made available at: https://cupid-curation.github.io.

cs.RO↗

arXiv2025

HoMeR: Learning In-the-Wild Mobile Manipulation via Hybrid Imitation and Whole-Body Control

We introduce HoMeR, an imitation learning framework for mobile manipulation that combines whole-body control with hybrid action modes that handle both long-range and fine-grained motion, enabling effective performance on realistic in-the-wild tasks. At its core is a fast, kinematics-based whole-body controller that maps desired end-effector poses to coordinated motion across the mobile base and arm. Within this reduced end-effector action space, HoMeR learns to switch between absolute pose predictions for long-range movement and relative pose predictions for fine-grained manipulation, offloading low-level coordination to the controller and focusing learning on task-level decisions. We deploy HoMeR on a holonomic mobile manipulator with a 7-DoF arm in a real home. We compare HoMeR to baselines without hybrid actions or whole-body control across 3 simulated and 3 real household tasks such as opening cabinets, sweeping trash, and rearranging pillows. Across tasks, HoMeR achieves an overall success rate of 79.17% using just 20 demonstrations per task, outperforming the next best baseline by 29.17 on average. HoMeR is also compatible with vision-language models and can leverage their internet-scale priors to better generalize to novel object appearances, layouts, and cluttered scenes. In summary, HoMeR moves beyond tabletop settings and demonstrates a scalable path toward sample-efficient, generalizable manipulation in everyday indoor spaces. Code, videos, and supplementary material are available at: http://homer-manip.github.io

cs.RO↗

arXiv2025

Mobi-$\pi$: Mobilizing Your Robot Learning Policy

Learned visuomotor policies are capable of performing increasingly complex manipulation tasks. However, most of these policies are trained on data collected from limited robot positions and camera viewpoints. This leads to poor generalization to novel robot positions, which limits the use of these policies on mobile platforms, especially for precise tasks like pressing buttons or turning faucets. In this work, we formulate the policy mobilization problem: find a mobile robot base pose in a novel environment that is in distribution with respect to a manipulation policy trained on a limited set of camera viewpoints. Compared to retraining the policy itself to be more robust to unseen robot base pose initializations, policy mobilization decouples navigation from manipulation and thus does not require additional demonstrations. Crucially, this problem formulation complements existing efforts to improve manipulation policy robustness to novel viewpoints and remains compatible with them. We propose a novel approach for policy mobilization that bridges navigation and manipulation by optimizing the robot's base pose to align with an in-distribution base pose for a learned policy. Our approach utilizes 3D Gaussian Splatting for novel view synthesis, a score function to evaluate pose suitability, and sampling-based optimization to identify optimal robot poses. To understand policy mobilization in more depth, we also introduce the Mobi-$\pi$ framework, which includes: (1) metrics that quantify the difficulty of mobilizing a given policy, (2) a suite of simulated mobile manipulation tasks based on RoboCasa to evaluate policy mobilization, and (3) visualization tools for analysis. In both our developed simulation task suite and the real world, we show that our approach outperforms baselines, demonstrating its effectiveness for policy mobilization.

cs.RO↗

arXiv2025

Hierarchical Feature Learning for Medical Point Clouds via State Space Model

Deep learning-based point cloud modeling has been widely investigated as an indispensable component of general shape analysis. Recently, transformer and state space model (SSM) have shown promising capacities in point cloud learning. However, limited research has been conducted on medical point clouds, which have great potential in disease diagnosis and treatment. This paper presents an SSM-based hierarchical feature learning framework for medical point cloud understanding. Specifically, we down-sample input into multiple levels through the farthest point sampling. At each level, we perform a series of k-nearest neighbor (KNN) queries to aggregate multi-scale structural information. To assist SSM in processing point clouds, we introduce coordinate-order and inside-out scanning strategies for efficient serialization of irregular points. Point features are calculated progressively from short neighbor sequences and long point sequences through vanilla and group Point SSM blocks, to capture both local patterns and long-range dependencies. To evaluate the proposed method, we build a large-scale medical point cloud dataset named MedPointS for anatomy classification, completion, and segmentation. Extensive experiments conducted on MedPointS demonstrate that our method achieves superior performance across all tasks. The dataset is available at https://flemme-docs.readthedocs.io/en/latest/medpoints.html. Code is merged to a public medical imaging platform: https://github.com/wlsdzyzl/flemme.

cs.CV↗

arXiv2025

Zero-shot Autonomous Microscopy for Scalable and Intelligent Characterization of 2D Materials

Characterization of atomic-scale materials traditionally requires human experts with months to years of specialized training. Even for trained human operators, accurate and reliable characterization remains challenging when examining newly discovered materials such as two-dimensional (2D) structures. This bottleneck drives demand for fully autonomous experimentation systems capable of comprehending research objectives without requiring large training datasets. In this work, we present ATOMIC (Autonomous Technology for Optical Microscopy & Intelligent Characterization), an end-to-end framework that integrates foundation models to enable fully autonomous, zero-shot characterization of 2D materials. Our system integrates the vision foundation model (i.e., Segment Anything Model), large language models (i.e., ChatGPT), unsupervised clustering, and topological analysis to automate microscope control, sample scanning, image segmentation, and intelligent analysis through prompt engineering, eliminating the need for additional training. When analyzing typical MoS2 samples, our approach achieves 99.7% segmentation accuracy for single layer identification, which is equivalent to that of human experts. In addition, the integrated model is able to detect grain boundary slits that are challenging to identify with human eyes. Furthermore, the system retains robust accuracy despite variable conditions including defocus, color temperature fluctuations, and exposure variations. It is applicable to a broad spectrum of common 2D materials-including graphene, MoS2, WSe2, SnSe-regardless of whether they were fabricated via chemical vapor deposition or mechanical exfoliation. This work represents the implementation of foundation models to achieve autonomous analysis, establishing a scalable and data-efficient characterization paradigm that fundamentally transforms the approach to nanoscale materials research.

cond-mat.mtrl-sci↗

arXiv2025

Transfer Risk Map: Mitigating Pixel-level Negative Transfer in Medical Segmentation

How to mitigate negative transfer in transfer learning is a long-standing and challenging issue, especially in the application of medical image segmentation. Existing methods for reducing negative transfer focus on classification or regression tasks, ignoring the non-uniform negative transfer risk in different image regions. In this work, we propose a simple yet effective weighted fine-tuning method that directs the model's attention towards regions with significant transfer risk for medical semantic segmentation. Specifically, we compute a transferability-guided transfer risk map to quantify the transfer hardness for each pixel and the potential risks of negative transfer. During the fine-tuning phase, we introduce a map-weighted loss function, normalized with image foreground size to counter class imbalance. Extensive experiments on brain segmentation datasets show our method significantly improves the target task performance, with gains of 4.37% on FeTS2021 and 1.81% on iSeg2019, avoiding negative transfer across modalities and tasks. Meanwhile, a 2.9% gain under a few-shot scenario validates the robustness of our approach.

cs.CV↗

arXiv2025

Adapting Foundation Models for Few-Shot Medical Image Segmentation: Actively and Sequentially

Recent advances in foundation models have brought promising results in computer vision, including medical image segmentation. Fine-tuning foundation models on specific low-resource medical tasks has become a standard practice. However, ensuring reliable and robust model adaptation when the target task has a large domain gap and few annotated samples remains a challenge. Previous few-shot domain adaptation (FSDA) methods seek to bridge the distribution gap between source and target domains by utilizing auxiliary data. The selection and scheduling of auxiliaries are often based on heuristics, which can easily cause negative transfer. In this work, we propose an Active and Sequential domain AdaPtation (ASAP) framework for dynamic auxiliary dataset selection in FSDA. We formulate FSDA as a multi-armed bandit problem and derive an efficient reward function to prioritize training on auxiliary datasets that align closely with the target task, through a single-round fine-tuning. Empirical validation on diverse medical segmentation datasets demonstrates that our method achieves favorable segmentation performance, significantly outperforming the state-of-the-art FSDA methods, achieving an average gain of 27.75% on MRI and 7.52% on CT datasets in Dice score. Code is available at the git repository: https://github.com/techicoco/ASAP.

cs.CV↗

arXiv2024

Selecting the Best Sequential Transfer Path for Medical Image Segmentation with Limited Labeled Data

The medical image processing field often encounters the critical issue of scarce annotated data. Transfer learning has emerged as a solution, yet how to select an adequate source task and effectively transfer the knowledge to the target task remains challenging. To address this, we propose a novel sequential transfer scheme with a task affinity metric tailored for medical images. Considering the characteristics of medical image segmentation tasks, we analyze the image and label similarity between tasks and compute the task affinity scores, which assess the relatedness among tasks. Based on this, we select appropriate source tasks and develop an effective sequential transfer strategy by incorporating intermediate source tasks to gradually narrow the domain discrepancy and minimize the transfer cost. Thereby we identify the best sequential transfer path for the given target task. Extensive experiments on three MRI medical datasets, FeTS 2022, iSeg-2019, and WMH, demonstrate the efficacy of our method in finding the best source sequence. Compared with directly transferring from a single source task, the sequential transfer results underline a significant improvement in target task performance, achieving an average of 2.58% gain in terms of segmentation Dice score, notably, 6.00% for FeTS 2022. Code is available at the git repository.

eess.IV↗

arXiv2024

Unpacking Failure Modes of Generative Policies: Runtime Monitoring of Consistency and Progress

Robot behavior policies trained via imitation learning are prone to failure under conditions that deviate from their training data. Thus, algorithms that monitor learned policies at test time and provide early warnings of failure are necessary to facilitate scalable deployment. We propose Sentinel, a runtime monitoring framework that splits the detection of failures into two complementary categories: 1) Erratic failures, which we detect using statistical measures of temporal action consistency, and 2) task progression failures, where we use Vision Language Models (VLMs) to detect when the policy confidently and consistently takes actions that do not solve the task. Our approach has two key strengths. First, because learned policies exhibit diverse failure modes, combining complementary detectors leads to significantly higher accuracy at failure detection. Second, using a statistical temporal action consistency measure ensures that we quickly detect when multimodal, generative policies exhibit erratic behavior at negligible computational cost. In contrast, we only use VLMs to detect failure modes that are less time-sensitive. We demonstrate our approach in the context of diffusion policies trained on robotic mobile manipulation domains in both simulation and the real world. By unifying temporal consistency detection and VLM runtime monitoring, Sentinel detects 18% more failures than using either of the two detectors alone and significantly outperforms baselines, thus highlighting the importance of assigning specialized detectors to complementary categories of failure. Qualitative results are made available at https://sites.google.com/stanford.edu/sentinel.

cs.RO↗

arXiv2024

Flemme: A Flexible and Modular Learning Platform for Medical Images

As the rapid development of computer vision and the emergence of powerful network backbones and architectures, the application of deep learning in medical imaging has become increasingly significant. Unlike natural images, medical images lack huge volumes of data but feature more modalities, making it difficult to train a general model that has satisfactory performance across various datasets. In practice, practitioners often suffer from manually creating and testing models combining independent backbones and architectures, which is a laborious and time-consuming process. We propose Flemme, a FLExible and Modular learning platform for MEdical images. Our platform separates encoders from the model architectures so that different models can be constructed via various combinations of supported encoders and architectures. We construct encoders using building blocks based on convolution, transformer, and state-space model (SSM) to process both 2D and 3D image patches. A base architecture is implemented following an encoder-decoder style, with several derived architectures for image segmentation, reconstruction, and generation tasks. In addition, we propose a general hierarchical architecture incorporating a pyramid loss to optimize and fuse vertical features. Experiments demonstrate that this simple design leads to an average improvement of 5.60% in Dice score and 7.81% in mean interaction of units (mIoU) for segmentation models, as well as an enhancement of 5.57% in peak signal-to-noise ratio (PSNR) and 8.22% in structural similarity (SSIM) for reconstruction models. We further utilize Flemme as an analytical tool to assess the effectiveness and efficiency of various encoders across different tasks. Code is available at https://github.com/wlsdzyzl/flemme.

eess.IV↗

arXiv2024

EquiBot: SIM(3)-Equivariant Diffusion Policy for Generalizable and Data Efficient Learning

Building effective imitation learning methods that enable robots to learn from limited data and still generalize across diverse real-world environments is a long-standing problem in robot learning. We propose Equibot, a robust, data-efficient, and generalizable approach for robot manipulation task learning. Our approach combines SIM(3)-equivariant neural network architectures with diffusion models. This ensures that our learned policies are invariant to changes in scale, rotation, and translation, enhancing their applicability to unseen environments while retaining the benefits of diffusion-based policy learning such as multi-modality and robustness. We show on a suite of 6 simulation tasks that our proposed method reduces the data requirements and improves generalization to novel scenarios. In the real world, with 10 variations of 6 mobile manipulation tasks, we show that our method can easily generalize to novel objects and scenes after learning from just 5 minutes of human demonstrations in each task.

cs.RO↗

arXiv2024

EquivAct: SIM(3)-Equivariant Visuomotor Policies beyond Rigid Object Manipulation

If a robot masters folding a kitchen towel, we would expect it to master folding a large beach towel. However, existing policy learning methods that rely on data augmentation still don't guarantee such generalization. Our insight is to add equivariance to both the visual object representation and policy architecture. We propose EquivAct which utilizes SIM(3)-equivariant network structures that guarantee generalization across all possible object translations, 3D rotations, and scales by construction. EquivAct is trained in two phases. We first pre-train a SIM(3)-equivariant visual representation on simulated scene point clouds. Then, we learn a SIM(3)-equivariant visuomotor policy using a small amount of source task demonstrations. We show that the learned policy directly transfers to objects that substantially differ from demonstrations in scale, position, and orientation. We evaluate our method in three manipulation tasks involving deformable and articulated objects, going beyond typical rigid object manipulation tasks considered in prior work. We conduct experiments both in simulation and in reality. For real robot experiments, our method uses 20 human demonstrations of a tabletop task and transfers zero-shot to a mobile manipulation task in a much larger setup. Experiments confirm that our contrastive pre-training procedure and equivariant architecture offer significant improvements over prior work. Project website: https://equivact.github.io

cs.RO↗

arXiv2024

DROID: A Large-Scale In-The-Wild Robot Manipulation Dataset

The creation of large, diverse, high-quality robot manipulation datasets is an important stepping stone on the path toward more capable and robust robotic manipulation policies. However, creating such datasets is challenging: collecting robot manipulation data in diverse environments poses logistical and safety challenges and requires substantial investments in hardware and human labour. As a result, even the most general robot manipulation policies today are mostly trained on data collected in a small number of environments with limited scene and task diversity. In this work, we introduce DROID (Distributed Robot Interaction Dataset), a diverse robot manipulation dataset with 76k demonstration trajectories or 350 hours of interaction data, collected across 564 scenes and 84 tasks by 50 data collectors in North America, Asia, and Europe over the course of 12 months. We demonstrate that training with DROID leads to policies with higher performance and improved generalization ability. We open source the full dataset, policy learning code, and a detailed guide for reproducing our robot hardware setup.

cs.RO↗

arXiv2023

Robot Fine-Tuning Made Easy: Pre-Training Rewards and Policies for Autonomous Real-World Reinforcement Learning

The pre-train and fine-tune paradigm in machine learning has had dramatic success in a wide range of domains because the use of existing data or pre-trained models on the internet enables quick and easy learning of new tasks. We aim to enable this paradigm in robotic reinforcement learning, allowing a robot to learn a new task with little human effort by leveraging data and models from the Internet. However, reinforcement learning often requires significant human effort in the form of manual reward specification or environment resets, even if the policy is pre-trained. We introduce RoboFuME, a reset-free fine-tuning system that pre-trains a multi-task manipulation policy from diverse datasets of prior experiences and self-improves online to learn a target task with minimal human intervention. Our insights are to utilize calibrated offline reinforcement learning techniques to ensure efficient online fine-tuning of a pre-trained policy in the presence of distribution shifts and leverage pre-trained vision language models (VLMs) to build a robust reward classifier for autonomously providing reward signals during the online fine-tuning process. In a diverse set of five real robot manipulation tasks, we show that our method can incorporate data from an existing robot dataset collected at a different institution and improve on a target task within as little as 3 hours of autonomous real-world experience. We also demonstrate in simulation experiments that our method outperforms prior works that use different RL algorithms or different approaches for predicting rewards. Project website: https://robofume.github.io

cs.RO↗