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Jingze Liu

Publications and source records attributed to Jingze Liu.

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A unified resource-pool architecture for high-dimensional direct-detection optical communication

Increasing optical communication capacity without proportionally increasing receiver complexity remains a key challenge for direct-detection links. Conventional systems typically assign wavelength, polarization and intensity to fixed, separately recovered functions, so that alphabet expansion is accompanied by additional demultiplexing, polarization handling, receiver branches and electronic processing. Here we introduce a unified resource-pool architecture for high-dimensional direct-detection optical communication, in which wavelength, polarization and intensity are jointly organized as a composite optical symbol space and recovered through optical-domain joint projection rather than dimension-by-dimension separation. The receiver is implemented with an integrated disordered photonic processor that transforms each composite optical state into a reproducible multi-output electrical fingerprint for single-shot direct recovery. In a dual-wavelength transmission experiment, the system resolves 4096 composite symbols, corresponding to 12 bits per symbol slot, with a bit error rate of 4.25e-4 after 10 km standard-fiber transmission. Additional experiments demonstrate dense polarization alphabets, wavelength-indexed state-space expansion and high-launch-power operation over hollow-core fiber. These results establish disorder-enabled joint projection in an integrated photonic processor as a route to hardware-efficient high-dimensional direct-detection communication beyond conventional dimension-partitioned receiver architecture.

physics.optics

High-Speed Multi-Dimensional Optical Field Measurement via MMF-MCF Spatial-Temporal Mapping Architecture

Wavelength and state of polarization constitute fundamental dimensions of optical fields. While simultaneous quantification of these parameters is critical, existing methodologies often lack the speed required for real-time analysis. Here, we present a compact high-dimensional optical field analyzer employing a discrete spatiotemporal sampling architecture based on multimode and multicore fibers. An optical delay line array maps spatial speckle patterns into serial pulse sequences and facilitates efficient single-pixel detection. Leveraging a residual multilayer perceptron network, the system attains a wavelength mean absolute error of 0.25 pm and a polarization resolution of 0.2015 (in normalized Stokes space). Analysis of the spatial sampling density reveals that 5-6 sampling points are required to balance measurement rate and accuracy. Notably, the system exhibits isotropic fault tolerance against single-core failures. This confirms that optical field information is redundantly encoded across the entire fiber cross-section rather than localized in specific channels. This framework provides a solution for multiparameter decoupling under severe spatial downsampling and useful insights for the design of next generation high-speed and robust all-fiber analysis systems.

physics.optics

Robust and Hyper-Efficient Multi-dimensional Optical Fiber Semantic Communication

The growing demands of artificial intelligence and immersive media require communication beyond bit-level accuracy to meaning awareness. Conventional optical systems that focused on syntactic precision suffer significant inefficiencies. Here, we introduce a multi-dimensional semantic communication framework that bridges this gap by directly mapping high-level semantic features onto the orthogonal physical dimensions of light, frequency, polarization, and intensity, within a multimode fiber. This synergistic co-design of semantic logic and the photonic channel achieve an unprecedented equivalent spectral efficiency approaching 1000 bit/s/Hz. Moreover, it demonstrates profound resilience, maintaining high-fidelity reconstruction even when the physical-layer symbol error rate exceeds 36%, a condition under which conventional communication systems fail completely. Crucially, this deeply integrated co-design of semantic encoding and physical-layer modulation enables full semantic demodulation with only single-ended intensity detection, therefore significantly reducing system complexity and cost. This work establishes a validated pathway toward hyper-efficient, error-resilient optical networks for the next generation of data-intensive computing.

physics.optics

Comparative Analysis of Machine Learning Algorithms for Predicting On-Target and Off-Target Effects of CRISPR-Cas13d for gene editing

CRISPR-Cas13 is a system that utilizes single stranded RNAs for RNA editing. Prediction of on-target and off-target effects for the CRISPR-Cas13d dependency enables us to design specific single guide RNAs (sgRNAs) that help locate the desired RNA target positions. In this study, we compared the performance of multiple machine learning algorithms in predicting these effects using a reported dataset. Our results show that Catboost is the most accurate model with high sensitivity. This finding represents a significant advancement in our understanding of how to chose modeling methods to deal with RNA sequence feaatures effictivelys. Furthermore, our approach can potentially be applied to other CRISPR systems and genetic engineering techniques. Overall, this work has important implications for developing safer and more effective gene therapies and biotechnological applications.

q-bio.QM

On Generalization and Computation of Tukey's Depth: Part I

Tukey's depth offers a powerful tool for nonparametric inference and estimation, but also encounters serious computational and methodological difficulties in modern statistical data analysis. This paper studies how to generalize and compute Tukey-type depths in multi-dimensions. A general framework of influence-driven polished subspace depth, which emphasizes the importance of the underlying influence space and discrepancy measure, is introduced. The new matrix formulation enables us to utilize state-of-the-art optimization techniques to develop scalable algorithms with implementation ease and guaranteed fast convergence. In particular, half-space depth as well as regression depth can now be computed much faster than previously possible, with the support from extensive experiments. A companion paper is also offered to the reader in the same issue of this journal.

stat.ME

On Generalization and Computation of Tukey's Depth: Part II

This paper studies how to generalize Tukey's depth to problems defined in a restricted space that may be curved or have boundaries, and to problems with a nondifferentiable objective. First, using a manifold approach, we propose a broad class of Riemannian depth for smooth problems defined on a Riemannian manifold, and showcase its applications in spherical data analysis, principal component analysis, and multivariate orthogonal regression. Moreover, for nonsmooth problems, we introduce additional slack variables and inequality constraints to define a novel slacked data depth, which can perform center-outward rankings of estimators arising from sparse learning and reduced rank regression. Real data examples illustrate the usefulness of some proposed data depths.

stat.ME

Bioinformatic analysis for structure and function of Glutamine synthetase(GS)

Objective: To predict structure and function of Glutamine synthetase (GS) from Pseudoalteromonas sp. by bioinformatics technology, and to provide a theoretical basis for further study. Methods: Open reading frame (ORF) of GS sequence from Pseudoalteromonas sp. was obtained by ORF finder and was translated into amino acid residue. The structure domain was analyzed by Blast. By the method of analysis tools: Protparam, ProtScale, SignalP-4.0, TMHMM, SOPMA, SWISS-MODEL, NCBI SMART-BLAST and MAGA 7.0, the structure and function of the protein were predicted and analyzed. Results: The results showed that the sequence was GS with 468 amino acid residues, theoretical molecular weight was 51986.64 Da. The protein has the closest evolutionary status with Shewanella oneidensis. Then it had no signal peptide site and transmembrane domain. Secondary structure of GS contained 35.04% alpha-helix, 16.67% Extended chain, 5.34% beta-turn, 42.95% RandomCoil. Conclusions: This GU was a variety of biological functions of protein that may be used as a molecular samples of microbial nitrogen metabolism in extreme environments.

q-bio.BM