arXiv subjects

Jinlin Wu

Publications and source records attributed to Jinlin Wu.

At least 55 records · Page 3Linked to original sources

arXiv2025

EndoChat: Grounded Multimodal Large Language Model for Endoscopic Surgery

Recently, Multimodal Large Language Models (MLLMs) have demonstrated their immense potential in computer-aided diagnosis and decision-making. In the context of robotic-assisted surgery, MLLMs can serve as effective tools for surgical training and guidance. However, there is still a lack of MLLMs specialized for surgical scene understanding in clinical applications. In this work, we introduce EndoChat to address various dialogue paradigms and subtasks in surgical scene understanding that surgeons encounter. To train our EndoChat, we construct the Surg-396K dataset through a novel pipeline that systematically extracts surgical information and generates structured annotations based on collected large-scale endoscopic surgery datasets. Furthermore, we introduce a multi-scale visual token interaction mechanism and a visual contrast-based reasoning mechanism to enhance the model's representation learning and reasoning capabilities. Our model achieves state-of-the-art performance across five dialogue paradigms and eight surgical scene understanding tasks. Additionally, we conduct evaluations with professional surgeons, most of whom provide positive feedback on collaborating with EndoChat. Overall, these results demonstrate that our EndoChat has great potential to significantly advance training and automation in robotic-assisted surgery.

cs.CV↗

arXiv2025

Progressive Curriculum Learning with Scale-Enhanced U-Net for Continuous Airway Segmentation

Continuous and accurate segmentation of airways in chest CT images is essential for preoperative planning and real-time bronchoscopy navigation. Despite advances in deep learning for medical image segmentation, maintaining airway continuity remains a challenge, particularly due to intra-class imbalance between large and small branches and blurred CT scan details. To address these challenges, we propose a progressive curriculum learning pipeline and a Scale-Enhanced U-Net (SE-UNet) to enhance segmentation continuity. Specifically, our progressive curriculum learning pipeline consists of three stages: extracting main airways, identifying small airways, and repairing discontinuities. The cropping sampling strategy in each stage reduces feature interference between airways of different scales, effectively addressing the challenge of intra-class imbalance. In the third training stage, we present an Adaptive Topology-Responsive Loss (ATRL) to guide the network to focus on airway continuity. The progressive training pipeline shares the same SE-UNet, integrating multi-scale inputs and Detail Information Enhancers (DIEs) to enhance information flow and effectively capture the intricate details of small airways. Additionally, we propose a robust airway tree parsing method and hierarchical evaluation metrics to provide more clinically relevant and precise analysis. Experiments on both in-house and public datasets demonstrate that our method outperforms existing approaches, significantly improving the accuracy of small airways and the completeness of the airway tree. The code will be released upon publication.

eess.IV↗

arXiv2025

A Review of BioTree Construction in the Context of Information Fusion: Priors, Methods, Applications and Trends

Biological tree (BioTree) analysis is a foundational tool in biology, enabling the exploration of evolutionary and differentiation relationships among organisms, genes, and cells. Traditional tree construction methods, while instrumental in early research, face significant challenges in handling the growing complexity and scale of modern biological data, particularly in integrating multimodal datasets. Advances in deep learning (DL) offer transformative opportunities by enabling the fusion of biological prior knowledge with data-driven models. These approaches address key limitations of traditional methods, facilitating the construction of more accurate and interpretable BioTrees. This review highlights critical biological priors essential for phylogenetic and differentiation tree analyses and explores strategies for integrating these priors into DL models to enhance accuracy and interpretability. Additionally, the review systematically examines commonly used data modalities and databases, offering a valuable resource for developing and evaluating multimodal fusion models. Traditional tree construction methods are critically assessed, focusing on their biological assumptions, technical limitations, and scalability issues. Recent advancements in DL-based tree generation methods are reviewed, emphasizing their innovative approaches to multimodal integration and prior knowledge incorporation. Finally, the review discusses diverse applications of BioTrees in various biological disciplines, from phylogenetics to developmental biology, and outlines future trends in leveraging DL to advance BioTree research. By addressing the challenges of data complexity and prior knowledge integration, this review aims to inspire interdisciplinary innovation at the intersection of biology and DL.

q-bio.PE↗

arXiv2025

Generating on Generated: An Approach Towards Self-Evolving Diffusion Models

Recursive Self-Improvement (RSI) enables intelligence systems to autonomously refine their capabilities. This paper explores the application of RSI in text-to-image diffusion models, addressing the challenge of training collapse caused by synthetic data. We identify two key factors contributing to this collapse: the lack of perceptual alignment and the accumulation of generative hallucinations. To mitigate these issues, we propose three strategies: (1) a prompt construction and filtering pipeline designed to facilitate the generation of perceptual aligned data, (2) a preference sampling method to identify human-preferred samples and filter out generative hallucinations, and (3) a distribution-based weighting scheme to penalize selected samples with hallucinatory errors. Our extensive experiments validate the effectiveness of these approaches.

cs.CV↗

arXiv2025

SurgPLAN++: Universal Surgical Phase Localization Network for Online and Offline Inference

Surgical phase recognition is critical for assisting surgeons in understanding surgical videos. Existing studies focused more on online surgical phase recognition, by leveraging preceding frames to predict the current frame. Despite great progress, they formulated the task as a series of frame-wise classification, which resulted in a lack of global context of the entire procedure and incoherent predictions. Moreover, besides online analysis, accurate offline surgical phase recognition is also in significant clinical need for retrospective analysis, and existing online algorithms do not fully analyze the entire video, thereby limiting accuracy in offline analysis. To overcome these challenges and enhance both online and offline inference capabilities, we propose a universal Surgical Phase Localization Network, named SurgPLAN++, with the principle of temporal detection. To ensure a global understanding of the surgical procedure, we devise a phase localization strategy for SurgPLAN++ to predict phase segments across the entire video through phase proposals. For online analysis, to generate high-quality phase proposals, SurgPLAN++ incorporates a data augmentation strategy to extend the streaming video into a pseudo-complete video through mirroring, center-duplication, and down-sampling. For offline analysis, SurgPLAN++ capitalizes on its global phase prediction framework to continuously refine preceding predictions during each online inference step, thereby significantly improving the accuracy of phase recognition. We perform extensive experiments to validate the effectiveness, and our SurgPLAN++ achieves remarkable performance in both online and offline modes, which outperforms state-of-the-art methods. The source code is available at https://github.com/franciszchen/SurgPLAN-Plus.

cs.CV↗

arXiv2025

Advancing Dense Endoscopic Reconstruction with Gaussian Splatting-driven Surface Normal-aware Tracking and Mapping

Simultaneous Localization and Mapping (SLAM) is essential for precise surgical interventions and robotic tasks in minimally invasive procedures. While recent advancements in 3D Gaussian Splatting (3DGS) have improved SLAM with high-quality novel view synthesis and fast rendering, these systems struggle with accurate depth and surface reconstruction due to multi-view inconsistencies. Simply incorporating SLAM and 3DGS leads to mismatches between the reconstructed frames. In this work, we present Endo-2DTAM, a real-time endoscopic SLAM system with 2D Gaussian Splatting (2DGS) to address these challenges. Endo-2DTAM incorporates a surface normal-aware pipeline, which consists of tracking, mapping, and bundle adjustment modules for geometrically accurate reconstruction. Our robust tracking module combines point-to-point and point-to-plane distance metrics, while the mapping module utilizes normal consistency and depth distortion to enhance surface reconstruction quality. We also introduce a pose-consistent strategy for efficient and geometrically coherent keyframe sampling. Extensive experiments on public endoscopic datasets demonstrate that Endo-2DTAM achieves an RMSE of $1.87\pm 0.63$ mm for depth reconstruction of surgical scenes while maintaining computationally efficient tracking, high-quality visual appearance, and real-time rendering. Our code will be released at github.com/lastbasket/Endo-2DTAM.

cs.CV↗

arXiv2024

Universal Domain Adaptive Object Detection via Dual Probabilistic Alignment

Domain Adaptive Object Detection (DAOD) transfers knowledge from a labeled source domain to an unannotated target domain under closed-set assumption. Universal DAOD (UniDAOD) extends DAOD to handle open-set, partial-set, and closed-set domain adaptation. In this paper, we first unveil two issues: domain-private category alignment is crucial for global-level features, and the domain probability heterogeneity of features across different levels. To address these issues, we propose a novel Dual Probabilistic Alignment (DPA) framework to model domain probability as Gaussian distribution, enabling the heterogeneity domain distribution sampling and measurement. The DPA consists of three tailored modules: the Global-level Domain Private Alignment (GDPA), the Instance-level Domain Shared Alignment (IDSA), and the Private Class Constraint (PCC). GDPA utilizes the global-level sampling to mine domain-private category samples and calculate alignment weight through a cumulative distribution function to address the global-level private category alignment. IDSA utilizes instance-level sampling to mine domain-shared category samples and calculates alignment weight through Gaussian distribution to conduct the domain-shared category domain alignment to address the feature heterogeneity. The PCC aggregates domain-private category centroids between feature and probability spaces to mitigate negative transfer. Extensive experiments demonstrate that our DPA outperforms state-of-the-art UniDAOD and DAOD methods across various datasets and scenarios, including open, partial, and closed sets. Codes are available at \url{https://github.com/zyfone/DPA}.

cs.CV↗

arXiv2024

SurgBox: Agent-Driven Operating Room Sandbox with Surgery Copilot

Surgical interventions, particularly in neurology, represent complex and high-stakes scenarios that impose substantial cognitive burdens on surgical teams. Although deliberate education and practice can enhance cognitive capabilities, surgical training opportunities remain limited due to patient safety concerns. To address these cognitive challenges in surgical training and operation, we propose SurgBox, an agent-driven sandbox framework to systematically enhance the cognitive capabilities of surgeons in immersive surgical simulations. Specifically, our SurgBox leverages large language models (LLMs) with tailored Retrieval-Augmented Generation (RAG) to authentically replicate various surgical roles, enabling realistic training environments for deliberate practice. In particular, we devise Surgery Copilot, an AI-driven assistant to actively coordinate the surgical information stream and support clinical decision-making, thereby diminishing the cognitive workload of surgical teams during surgery. By incorporating a novel Long-Short Memory mechanism, our Surgery Copilot can effectively balance immediate procedural assistance with comprehensive surgical knowledge. Extensive experiments using real neurosurgical procedure records validate our SurgBox framework in both enhancing surgical cognitive capabilities and supporting clinical decision-making. By providing an integrated solution for training and operational support to address cognitive challenges, our SurgBox framework advances surgical education and practice, potentially transforming surgical outcomes and healthcare quality. The code is available at https://github.com/franciszchen/SurgBox.

cs.AI↗

arXiv2024

Expanding Scene Graph Boundaries: Fully Open-vocabulary Scene Graph Generation via Visual-Concept Alignment and Retention

Scene Graph Generation (SGG) offers a structured representation critical in many computer vision applications. Traditional SGG approaches, however, are limited by a closed-set assumption, restricting their ability to recognize only predefined object and relation categories. To overcome this, we categorize SGG scenarios into four distinct settings based on the node and edge: Closed-set SGG, Open Vocabulary (object) Detection-based SGG (OvD-SGG), Open Vocabulary Relation-based SGG (OvR-SGG), and Open Vocabulary Detection + Relationbased SGG (OvD+R-SGG). While object-centric open vocabulary SGG has been studied recently, the more challenging problem of relation-involved open-vocabulary SGG remains relatively unexplored. To fill this gap, we propose a unified framework named OvSGTR towards fully open vocabulary SGG from a holistic view. The proposed framework is an end-to-end transformer architecture, which learns a visual-concept alignment for both nodes and edges, enabling the model to recognize unseen categories. For the more challenging settings of relation-involved open vocabulary SGG, the proposed approach integrates relation-aware pretraining utilizing image-caption data and retains visual-concept alignment through knowledge distillation. Comprehensive experimental results on the Visual Genome benchmark demonstrate the effectiveness and superiority of the proposed framework. Our code is available at https://github.com/gpt4vision/OvSGTR/.

cs.CV↗

arXiv2024

SurgTrack: CAD-Free 3D Tracking of Real-world Surgical Instruments

Vision-based surgical navigation has received increasing attention due to its non-invasive, cost-effective, and flexible advantages. In particular, a critical element of the vision-based navigation system is tracking surgical instruments. Compared with 2D instrument tracking methods, 3D instrument tracking has broader value in clinical practice, but is also more challenging due to weak texture, occlusion, and lack of Computer-Aided Design (CAD) models for 3D registration. To solve these challenges, we propose the SurgTrack, a two-stage 3D instrument tracking method for CAD-free and robust real-world applications. In the first registration stage, we incorporate an Instrument Signed Distance Field (SDF) modeling the 3D representation of instruments, achieving CAD-freed 3D registration. Due to this, we can obtain the location and orientation of instruments in the 3D space by matching the video stream with the registered SDF model. In the second tracking stage, we devise a posture graph optimization module, leveraging the historical tracking results of the posture memory pool to optimize the tracking results and improve the occlusion robustness. Furthermore, we collect the Instrument3D dataset to comprehensively evaluate the 3D tracking of surgical instruments. The extensive experiments validate the superiority and scalability of our SurgTrack, by outperforming the state-of-the-arts with a remarkable improvement. The code and dataset are available at https://github.com/wenwucode/SurgTrack.

cs.CV↗

arXiv2024

PitVis-2023 Challenge: Workflow Recognition in videos of Endoscopic Pituitary Surgery

The field of computer vision applied to videos of minimally invasive surgery is ever-growing. Workflow recognition pertains to the automated recognition of various aspects of a surgery: including which surgical steps are performed; and which surgical instruments are used. This information can later be used to assist clinicians when learning the surgery; during live surgery; and when writing operation notes. The Pituitary Vision (PitVis) 2023 Challenge tasks the community to step and instrument recognition in videos of endoscopic pituitary surgery. This is a unique task when compared to other minimally invasive surgeries due to the smaller working space, which limits and distorts vision; and higher frequency of instrument and step switching, which requires more precise model predictions. Participants were provided with 25-videos, with results presented at the MICCAI-2023 conference as part of the Endoscopic Vision 2023 Challenge in Vancouver, Canada, on 08-Oct-2023. There were 18-submissions from 9-teams across 6-countries, using a variety of deep learning models. A commonality between the top performing models was incorporating spatio-temporal and multi-task methods, with greater than 50% and 10% macro-F1-score improvement over purely spacial single-task models in step and instrument recognition respectively. The PitVis-2023 Challenge therefore demonstrates state-of-the-art computer vision models in minimally invasive surgery are transferable to a new dataset, with surgery specific techniques used to enhance performance, progressing the field further. Benchmark results are provided in the paper, and the dataset is publicly available at: https://doi.org/10.5522/04/26531686.

cs.CV↗

arXiv2024

ASI-Seg: Audio-Driven Surgical Instrument Segmentation with Surgeon Intention Understanding

Surgical instrument segmentation is crucial in surgical scene understanding, thereby facilitating surgical safety. Existing algorithms directly detected all instruments of pre-defined categories in the input image, lacking the capability to segment specific instruments according to the surgeon's intention. During different stages of surgery, surgeons exhibit varying preferences and focus toward different surgical instruments. Therefore, an instrument segmentation algorithm that adheres to the surgeon's intention can minimize distractions from irrelevant instruments and assist surgeons to a great extent. The recent Segment Anything Model (SAM) reveals the capability to segment objects following prompts, but the manual annotations for prompts are impractical during the surgery. To address these limitations in operating rooms, we propose an audio-driven surgical instrument segmentation framework, named ASI-Seg, to accurately segment the required surgical instruments by parsing the audio commands of surgeons. Specifically, we propose an intention-oriented multimodal fusion to interpret the segmentation intention from audio commands and retrieve relevant instrument details to facilitate segmentation. Moreover, to guide our ASI-Seg segment of the required surgical instruments, we devise a contrastive learning prompt encoder to effectively distinguish the required instruments from the irrelevant ones. Therefore, our ASI-Seg promotes the workflow in the operating rooms, thereby providing targeted support and reducing the cognitive load on surgeons. Extensive experiments are performed to validate the ASI-Seg framework, which reveals remarkable advantages over classical state-of-the-art and medical SAMs in both semantic segmentation and intention-oriented segmentation. The source code is available at https://github.com/Zonmgin-Zhang/ASI-Seg.

cs.CV↗

arXiv2024

EndoUIC: Promptable Diffusion Transformer for Unified Illumination Correction in Capsule Endoscopy

Wireless Capsule Endoscopy (WCE) is highly valued for its non-invasive and painless approach, though its effectiveness is compromised by uneven illumination from hardware constraints and complex internal dynamics, leading to overexposed or underexposed images. While researchers have discussed the challenges of low-light enhancement in WCE, the issue of correcting for different exposure levels remains underexplored. To tackle this, we introduce EndoUIC, a WCE unified illumination correction solution using an end-to-end promptable diffusion transformer (DiT) model. In our work, the illumination prompt module shall navigate the model to adapt to different exposure levels and perform targeted image enhancement, in which the Adaptive Prompt Integration (API) and Global Prompt Scanner (GPS) modules shall further boost the concurrent representation learning between the prompt parameters and features. Besides, the U-shaped restoration DiT model shall capture the long-range dependencies and contextual information for unified illumination restoration. Moreover, we present a novel Capsule-endoscopy Exposure Correction (CEC) dataset, including ground-truth and corrupted image pairs annotated by expert photographers. Extensive experiments against a variety of state-of-the-art (SOTA) methods on four datasets showcase the effectiveness of our proposed method and components in WCE illumination restoration, and the additional downstream experiments further demonstrate its utility for clinical diagnosis and surgical assistance.

eess.IV↗

arXiv2024

UNO Arena for Evaluating Sequential Decision-Making Capability of Large Language Models

Sequential decision-making refers to algorithms that take into account the dynamics of the environment, where early decisions affect subsequent decisions. With large language models (LLMs) demonstrating powerful capabilities between tasks, we can't help but ask: Can Current LLMs Effectively Make Sequential Decisions? In order to answer this question, we propose the UNO Arena based on the card game UNO to evaluate the sequential decision-making capability of LLMs and explain in detail why we choose UNO. In UNO Arena, We evaluate the sequential decision-making capability of LLMs dynamically with novel metrics based Monte Carlo methods. We set up random players, DQN-based reinforcement learning players, and LLM players (e.g. GPT-4, Gemini-pro) for comparison testing. Furthermore, in order to improve the sequential decision-making capability of LLMs, we propose the TUTRI player, which can involves having LLMs reflect their own actions wtih the summary of game history and the game strategy. Numerous experiments demonstrate that the TUTRI player achieves a notable breakthrough in the performance of sequential decision-making compared to the vanilla LLM player.

cs.CL↗

arXiv2024

Weakly Supervised YOLO Network for Surgical Instrument Localization in Endoscopic Videos

In minimally invasive surgery, surgical instrument localization is a crucial task for endoscopic videos, which enables various applications for improving surgical outcomes. However, annotating the instrument localization in endoscopic videos is tedious and labor-intensive. In contrast, obtaining the category information is easy and efficient in real-world applications. To fully utilize the category information and address the localization problem, we propose a weakly supervised localization framework named WS-YOLO for surgical instruments. By leveraging the instrument category information as the weak supervision, our WS-YOLO framework adopts an unsupervised multi-round training strategy for the localization capability training. We validate our WS-YOLO framework on the Endoscopic Vision Challenge 2023 dataset, which achieves remarkable performance in the weakly supervised surgical instrument localization. The source code is available at https://github.com/Breezewrf/WS-YOLO.

eess.IV↗

arXiv2024

Transforming Surgical Interventions with Embodied Intelligence for Ultrasound Robotics

Ultrasonography has revolutionized non-invasive diagnostic methodologies, significantly enhancing patient outcomes across various medical domains. Despite its advancements, integrating ultrasound technology with robotic systems for automated scans presents challenges, including limited command understanding and dynamic execution capabilities. To address these challenges, this paper introduces a novel Ultrasound Embodied Intelligence system that synergistically combines ultrasound robots with large language models (LLMs) and domain-specific knowledge augmentation, enhancing ultrasound robots' intelligence and operational efficiency. Our approach employs a dual strategy: firstly, integrating LLMs with ultrasound robots to interpret doctors' verbal instructions into precise motion planning through a comprehensive understanding of ultrasound domain knowledge, including APIs and operational manuals; secondly, incorporating a dynamic execution mechanism, allowing for real-time adjustments to scanning plans based on patient movements or procedural errors. We demonstrate the effectiveness of our system through extensive experiments, including ablation studies and comparisons across various models, showcasing significant improvements in executing medical procedures from verbal commands. Our findings suggest that the proposed system improves the efficiency and quality of ultrasound scans and paves the way for further advancements in autonomous medical scanning technologies, with the potential to transform non-invasive diagnostics and streamline medical workflows.

cs.RO↗

arXiv2024

GPT4SGG: Synthesizing Scene Graphs from Holistic and Region-specific Narratives

Training Scene Graph Generation (SGG) models with natural language captions has become increasingly popular due to the abundant, cost-effective, and open-world generalization supervision signals that natural language offers. However, such unstructured caption data and its processing pose significant challenges in learning accurate and comprehensive scene graphs. The challenges can be summarized as three aspects: 1) traditional scene graph parsers based on linguistic representation often fail to extract meaningful relationship triplets from caption data. 2) grounding unlocalized objects of parsed triplets will meet ambiguity issues in visual-language alignment. 3) caption data typically are sparse and exhibit bias to partial observations of image content. Aiming to address these problems, we propose a divide-and-conquer strategy with a novel framework named \textit{GPT4SGG}, to obtain more accurate and comprehensive scene graph signals. This framework decomposes a complex scene into a bunch of simple regions, resulting in a set of region-specific narratives. With these region-specific narratives (partial observations) and a holistic narrative (global observation) for an image, a large language model (LLM) performs the relationship reasoning to synthesize an accurate and comprehensive scene graph. Experimental results demonstrate \textit{GPT4SGG} significantly improves the performance of SGG models trained on image-caption data, in which the ambiguity issue and long-tail bias have been well-handled with more accurate and comprehensive scene graphs.

cs.CV↗

arXiv2024

VS-Assistant: Versatile Surgery Assistant on the Demand of Surgeons

The surgical intervention is crucial to patient healthcare, and many studies have developed advanced algorithms to provide understanding and decision-making assistance for surgeons. Despite great progress, these algorithms are developed for a single specific task and scenario, and in practice require the manual combination of different functions, thus limiting the applicability. Thus, an intelligent and versatile surgical assistant is expected to accurately understand the surgeon's intentions and accordingly conduct the specific tasks to support the surgical process. In this work, by leveraging advanced multimodal large language models (MLLMs), we propose a Versatile Surgery Assistant (VS-Assistant) that can accurately understand the surgeon's intention and complete a series of surgical understanding tasks, e.g., surgical scene analysis, surgical instrument detection, and segmentation on demand. Specifically, to achieve superior surgical multimodal understanding, we devise a mixture of projectors (MOP) module to align the surgical MLLM in VS-Assistant to balance the natural and surgical knowledge. Moreover, we devise a surgical Function-Calling Tuning strategy to enable the VS-Assistant to understand surgical intentions, and thus make a series of surgical function calls on demand to meet the needs of the surgeons. Extensive experiments on neurosurgery data confirm that our VS-Assistant can understand the surgeon's intention more accurately than the existing MLLM, resulting in overwhelming performance in textual analysis and visual tasks. Source code and models will be made public.

cs.CV↗