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Jiyoung Im

Publications and source records attributed to Jiyoung Im.

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A Peaceman-Rachford Splitting Method for the Protein Side-Chain Positioning Problem

We formulate a doubly nonnegative (DNN) relaxation of the protein side-chain positioning (SCP) problem. We inherit the natural splitting of variables that stems from the facial reduction technique in the semidefinite relaxation. We solve the relaxation using a variant of the Peaceman-Rachford splitting method. Our numerical experiments show that we solve almost all instances of the NP-hard SCP problem to optimality.

math.OC

Revisiting Degeneracy, Strict Feasibility, Stability, in Linear Programming

Currently, the simplex method and the interior point method are indisputably the most popular algorithms for solving linear programs, LPs. Unlike general conic programs, LPs with a finite optimal value do not require strict feasibility in order to establish strong duality. Hence strict feasibility is seldom a concern, even though strict feasibility is equivalent to stability and a compact dual optimal set. This lack of concern is also true for other types of degeneracy of basic feasible solutions in LP. In this paper we discuss that the specific degeneracy that arises from lack of strict feasibility necessarily causes difficulties in both simplex and interior point methods. In particular, we show that the lack of strict feasibility implies that every basic feasible solution, BFS, is degenerate; thus conversely, the existence of a nondegenerate BFS implies that strict feasibility (regularity) holds. We prove the results using facial reduction and simple linear algebra. In particular, the facially reduced system reveals the implicit non-surjectivity of the linear map of the equality constraint system. As a consequence, we emphasize that facial reduction involves two steps where, the first guarantees strict feasibility, and the second recovers full row rank of the constraint matrix. This illustrates the implicit singularity of problems where strict feasibility fails, and also helps in obtaining new efficient techniques for preproccessing. We include an efficient preprocessing method that can be performed as an extension of phase-I of the two-phase simplex method. We show that this can be used to avoid the loss of precision for many well known problem sets in the literature, e.g., the NETLIB problem set.

math.OC

Robust Interior Point Method for Quantum Key Distribution Rate Computation

Security proof methods for quantum key distribution, QKD, that are based on the numerical key rate calculation problem, are powerful in principle. However, the practicality of the methods are limited by computational resources and the efficiency and accuracy of the underlying algorithms for convex optimization. We derive a stable reformulation of the convex nonlinear semidefinite programming, SDP, model for the key rate calculation problems. We use this to develop an efficient, accurate algorithm. The stable reformulation is based on novel forms of facial reduction, FR, for both the linear constraints and nonlinear quantum relative entropy objective function. This allows for a Gauss-Newton type interior-point approach that avoids the need for perturbations to obtain strict feasibility, a technique currently used in the literature. The result is high accuracy solutions with theoretically proven lower bounds for the original QKD from the FR stable reformulation. This provides novel contributions for FR for general SDP. We report on empirical results that dramatically improve on speed and accuracy, as well as solving previously intractable problems.

quant-ph