arXiv subjects

Johan A. K. Suykens

Publications and source records attributed to Johan A. K. Suykens.

At least 19 recordsLinked to original sources

arXiv2026

Deep Adaptive Bayesian Screening

We introduce Deep Adaptive Bayesian Screening (DABS), a method for performing adaptive factorial screening in high-dimensional discrete design spaces. DABS learns a policy network offline to sequentially select informative experiments, amortizing Bayesian Optimal Experimental Design. It handles binary designs, incorporates sparsity and interactions via a spike-and-slab prior with strong heredity. The model is trained using a contrastive lower bound on information about factor activity with nuisance effect sizes and noise variance analytically integrated out. Unlike prior amortized Bayesian design approaches, DABS also integrates Gibbs posterior inference at deployment, yielding posterior probabilities of factor activity and credible intervals on effect sizes. We demonstrate DABS on screening problems calibrated to real-world benchmarks and show it achieves superior accuracy and scalability over classical and Bayesian baselines under tight experimental budgets.

stat.ML↗

arXiv2025

HeNCler: Node Clustering in Heterophilous Graphs via Learned Asymmetric Similarity

Clustering nodes in heterophilous graphs is challenging as traditional methods assume that effective clustering is characterized by high intra-cluster and low inter-cluster connectivity. To address this, we introduce HeNCler-a novel approach for Heterophilous Node Clustering. HeNCler learns a similarity graph by optimizing a clustering-specific objective based on weighted kernel singular value decomposition. Our approach enables spectral clustering on an asymmetric similarity graph, providing flexibility for both directed and undirected graphs. By solving the primal problem directly, our method overcomes the computational difficulties of traditional adjacency partitioning-based approaches. Experimental results show that HeNCler significantly improves node clustering performance in heterophilous graph settings, highlighting the advantage of its asymmetric graph-learning framework.

cs.LG↗

arXiv2025

Accelerating Spectral Clustering under Fairness Constraints

Fairness of decision-making algorithms is an increasingly important issue. In this paper, we focus on spectral clustering with group fairness constraints, where every demographic group is represented in each cluster proportionally as in the general population. We present a new efficient method for fair spectral clustering (Fair SC) by casting the Fair SC problem within the difference of convex functions (DC) framework. To this end, we introduce a novel variable augmentation strategy and employ an alternating direction method of multipliers type of algorithm adapted to DC problems. We show that each associated subproblem can be solved efficiently, resulting in higher computational efficiency compared to prior work, which required a computationally expensive eigendecomposition. Numerical experiments demonstrate the effectiveness of our approach on both synthetic and real-world benchmarks, showing significant speedups in computation time over prior art, especially as the problem size grows. This work thus represents a considerable step forward towards the adoption of fair clustering in real-world applications.

cs.LG↗

arXiv2025

Nonlinear functional regression by functional deep neural network with kernel embedding

Recently, deep learning has been widely applied in functional data analysis (FDA) with notable empirical success. However, the infinite dimensionality of functional data necessitates an effective dimension reduction approach for functional learning tasks, particularly in nonlinear functional regression. In this paper, we introduce a functional deep neural network with an adaptive and discretization-invariant dimension reduction method. Our functional network architecture consists of three parts: first, a kernel embedding step that features an integral transformation with an adaptive smooth kernel; next, a projection step that utilizes eigenfunction bases based on a projection Mercer kernel for the dimension reduction; and finally, a deep ReLU neural network is employed for the prediction. Explicit rates of approximating nonlinear smooth functionals across various input function spaces by our proposed functional network are derived. Additionally, we conduct a generalization analysis for the empirical risk minimization (ERM) algorithm applied to our functional net, by employing a novel two-stage oracle inequality and the established functional approximation results. Ultimately, we conduct numerical experiments on both simulated and real datasets to demonstrate the effectiveness and benefits of our functional net.

stat.ML↗

arXiv2025

Learning in Feature Spaces via Coupled Covariances: Asymmetric Kernel SVD and Nyström method

In contrast with Mercer kernel-based approaches as used e.g., in Kernel Principal Component Analysis (KPCA), it was previously shown that Singular Value Decomposition (SVD) inherently relates to asymmetric kernels and Asymmetric Kernel Singular Value Decomposition (KSVD) has been proposed. However, the existing formulation to KSVD cannot work with infinite-dimensional feature mappings, the variational objective can be unbounded, and needs further numerical evaluation and exploration towards machine learning. In this work, i) we introduce a new asymmetric learning paradigm based on coupled covariance eigenproblem (CCE) through covariance operators, allowing infinite-dimensional feature maps. The solution to CCE is ultimately obtained from the SVD of the induced asymmetric kernel matrix, providing links to KSVD. ii) Starting from the integral equations corresponding to a pair of coupled adjoint eigenfunctions, we formalize the asymmetric Nyström method through a finite sample approximation to speed up training. iii) We provide the first empirical evaluations verifying the practical utility and benefits of KSVD and compare with methods resorting to symmetrization or linear SVD across multiple tasks.

cs.LG↗

arXiv2025

Generative Kernel Spectral Clustering

Modern clustering approaches often trade interpretability for performance, particularly in deep learning-based methods. We present Generative Kernel Spectral Clustering (GenKSC), a novel model combining kernel spectral clustering with generative modeling to produce both well-defined clusters and interpretable representations. By augmenting weighted variance maximization with reconstruction and clustering losses, our model creates an explorable latent space where cluster characteristics can be visualized through traversals along cluster directions. Results on MNIST and FashionMNIST datasets demonstrate the model's ability to learn meaningful cluster representations.

cs.LG↗

arXiv2024

Learning Analysis of Kernel Ridgeless Regression with Asymmetric Kernel Learning

Ridgeless regression has garnered attention among researchers, particularly in light of the ``Benign Overfitting'' phenomenon, where models interpolating noisy samples demonstrate robust generalization. However, kernel ridgeless regression does not always perform well due to the lack of flexibility. This paper enhances kernel ridgeless regression with Locally-Adaptive-Bandwidths (LAB) RBF kernels, incorporating kernel learning techniques to improve performance in both experiments and theory. For the first time, we demonstrate that functions learned from LAB RBF kernels belong to an integral space of Reproducible Kernel Hilbert Spaces (RKHSs). Despite the absence of explicit regularization in the proposed model, its optimization is equivalent to solving an $\ell_0$-regularized problem in the integral space of RKHSs, elucidating the origin of its generalization ability. Taking an approximation analysis viewpoint, we introduce an $l_q$-norm analysis technique (with $0<q<1$) to derive the learning rate for the proposed model under mild conditions. This result deepens our theoretical understanding, explaining that our algorithm's robust approximation ability arises from the large capacity of the integral space of RKHSs, while its generalization ability is ensured by sparsity, controlled by the number of support vectors. Experimental results on both synthetic and real datasets validate our theoretical conclusions.

cs.LG↗

arXiv2024

Self-Attention through Kernel-Eigen Pair Sparse Variational Gaussian Processes

While the great capability of Transformers significantly boosts prediction accuracy, it could also yield overconfident predictions and require calibrated uncertainty estimation, which can be commonly tackled by Gaussian processes (GPs). Existing works apply GPs with symmetric kernels under variational inference to the attention kernel; however, omitting the fact that attention kernels are in essence asymmetric. Moreover, the complexity of deriving the GP posteriors remains high for large-scale data. In this work, we propose Kernel-Eigen Pair Sparse Variational Gaussian Processes (KEP-SVGP) for building uncertainty-aware self-attention where the asymmetry of attention kernels is tackled by Kernel SVD (KSVD) and a reduced complexity is acquired. Through KEP-SVGP, i) the SVGP pair induced by the two sets of singular vectors from KSVD w.r.t. the attention kernel fully characterizes the asymmetry; ii) using only a small set of adjoint eigenfunctions from KSVD, the derivation of SVGP posteriors can be based on the inversion of a diagonal matrix containing singular values, contributing to a reduction in time complexity; iii) an evidence lower bound is derived so that variational parameters and network weights can be optimized with it. Experiments verify our excellent performances and efficiency on in-distribution, distribution-shift and out-of-distribution benchmarks.

cs.LG↗

arXiv2024

Sparsity via Sparse Group $k$-max Regularization

For the linear inverse problem with sparsity constraints, the $l_0$ regularized problem is NP-hard, and existing approaches either utilize greedy algorithms to find almost-optimal solutions or to approximate the $l_0$ regularization with its convex counterparts. In this paper, we propose a novel and concise regularization, namely the sparse group $k$-max regularization, which can not only simultaneously enhance the group-wise and in-group sparsity, but also casts no additional restraints on the magnitude of variables in each group, which is especially important for variables at different scales, so that it approximate the $l_0$ norm more closely. We also establish an iterative soft thresholding algorithm with local optimality conditions and complexity analysis provided. Through numerical experiments on both synthetic and real-world datasets, we verify the effectiveness and flexibility of the proposed method.

cs.LG↗

arXiv2024

Can overfitted deep neural networks in adversarial training generalize? -- An approximation viewpoint

Adversarial training is a widely used method to improve the robustness of deep neural networks (DNNs) over adversarial perturbations. However, it is empirically observed that adversarial training on over-parameterized networks often suffers from the \textit{robust overfitting}: it can achieve almost zero adversarial training error while the robust generalization performance is not promising. In this paper, we provide a theoretical understanding of the question of whether overfitted DNNs in adversarial training can generalize from an approximation viewpoint. Specifically, our main results are summarized into three folds: i) For classification, we prove by construction the existence of infinitely many adversarial training classifiers on over-parameterized DNNs that obtain arbitrarily small adversarial training error (overfitting), whereas achieving good robust generalization error under certain conditions concerning the data quality, well separated, and perturbation level. ii) Linear over-parameterization (meaning that the number of parameters is only slightly larger than the sample size) is enough to ensure such existence if the target function is smooth enough. iii) For regression, our results demonstrate that there also exist infinitely many overfitted DNNs with linear over-parameterization in adversarial training that can achieve almost optimal rates of convergence for the standard generalization error. Overall, our analysis points out that robust overfitting can be avoided but the required model capacity will depend on the smoothness of the target function, while a robust generalization gap is inevitable. We hope our analysis will give a better understanding of the mathematical foundations of robustness in DNNs from an approximation view.

stat.ML↗

arXiv2023

Unsupervised Neighborhood Propagation Kernel Layers for Semi-supervised Node Classification

We present a deep Graph Convolutional Kernel Machine (GCKM) for semi-supervised node classification in graphs. The method is built of two main types of blocks: (i) We introduce unsupervised kernel machine layers propagating the node features in a one-hop neighborhood, using implicit node feature mappings. (ii) We specify a semi-supervised classification kernel machine through the lens of the Fenchel-Young inequality. We derive an effective initialization scheme and efficient end-to-end training algorithm in the dual variables for the full architecture. The main idea underlying GCKM is that, because of the unsupervised core, the final model can achieve higher performance in semi-supervised node classification when few labels are available for training. Experimental results demonstrate the effectiveness of the proposed framework.

cs.LG↗

arXiv2023

Primal-Attention: Self-attention through Asymmetric Kernel SVD in Primal Representation

Recently, a new line of works has emerged to understand and improve self-attention in Transformers by treating it as a kernel machine. However, existing works apply the methods for symmetric kernels to the asymmetric self-attention, resulting in a nontrivial gap between the analytical understanding and numerical implementation. In this paper, we provide a new perspective to represent and optimize self-attention through asymmetric Kernel Singular Value Decomposition (KSVD), which is also motivated by the low-rank property of self-attention normally observed in deep layers. Through asymmetric KSVD, $i$) a primal-dual representation of self-attention is formulated, where the optimization objective is cast to maximize the projection variances in the attention outputs; $ii$) a novel attention mechanism, i.e., Primal-Attention, is proposed via the primal representation of KSVD, avoiding explicit computation of the kernel matrix in the dual; $iii$) with KKT conditions, we prove that the stationary solution to the KSVD optimization in Primal-Attention yields a zero-value objective. In this manner, KSVD optimization can be implemented by simply minimizing a regularization loss, so that low-rank property is promoted without extra decomposition. Numerical experiments show state-of-the-art performance of our Primal-Attention with improved efficiency. Moreover, we demonstrate that the deployed KSVD optimization regularizes Primal-Attention with a sharper singular value decay than that of the canonical self-attention, further verifying the great potential of our method. To the best of our knowledge, this is the first work that provides a primal-dual representation for the asymmetric kernel in self-attention and successfully applies it to modeling and optimization.

cs.LG↗

arXiv2023

Enhancing Kernel Flexibility via Learning Asymmetric Locally-Adaptive Kernels

The lack of sufficient flexibility is the key bottleneck of kernel-based learning that relies on manually designed, pre-given, and non-trainable kernels. To enhance kernel flexibility, this paper introduces the concept of Locally-Adaptive-Bandwidths (LAB) as trainable parameters to enhance the Radial Basis Function (RBF) kernel, giving rise to the LAB RBF kernel. The parameters in LAB RBF kernels are data-dependent, and its number can increase with the dataset, allowing for better adaptation to diverse data patterns and enhancing the flexibility of the learned function. This newfound flexibility also brings challenges, particularly with regards to asymmetry and the need for an efficient learning algorithm. To address these challenges, this paper for the first time establishes an asymmetric kernel ridge regression framework and introduces an iterative kernel learning algorithm. This novel approach not only reduces the demand for extensive support data but also significantly improves generalization by training bandwidths on the available training data. Experimental results on real datasets underscore the remarkable performance of the proposed algorithm, showcasing its superior capability in handling large-scale datasets compared to Nyström approximation-based algorithms. Moreover, it demonstrates a significant improvement in regression accuracy over existing kernel-based learning methods and even surpasses residual neural networks.

cs.LG↗

arXiv2023

Low-Rank Multitask Learning based on Tensorized SVMs and LSSVMs

Multitask learning (MTL) leverages task-relatedness to enhance performance. With the emergence of multimodal data, tasks can now be referenced by multiple indices. In this paper, we employ high-order tensors, with each mode corresponding to a task index, to naturally represent tasks referenced by multiple indices and preserve their structural relations. Based on this representation, we propose a general framework of low-rank MTL methods with tensorized support vector machines (SVMs) and least square support vector machines (LSSVMs), where the CP factorization is deployed over the coefficient tensor. Our approach allows to model the task relation through a linear combination of shared factors weighted by task-specific factors and is generalized to both classification and regression problems. Through the alternating optimization scheme and the Lagrangian function, each subproblem is transformed into a convex problem, formulated as a quadratic programming or linear system in the dual form. In contrast to previous MTL frameworks, our decision function in the dual induces a weighted kernel function with a task-coupling term characterized by the similarities of the task-specific factors, better revealing the explicit relations across tasks in MTL. Experimental results validate the effectiveness and superiority of our proposed methods compared to existing state-of-the-art approaches in MTL. The code of implementation will be available at https://github.com/liujiani0216/TSVM-MTL.

cs.LG↗

arXiv2023

Combining Primal and Dual Representations in Deep Restricted Kernel Machines Classifiers

In the context of deep learning with kernel machines, the deep Restricted Kernel Machine (DRKM) framework allows multiple levels of kernel PCA (KPCA) and Least-Squares Support Vector Machines (LSSVM) to be combined into a deep architecture using visible and hidden units. We propose a new method for DRKM classification coupling the objectives of KPCA and classification levels, with the hidden feature matrix lying on the Stiefel manifold. The classification level can be formulated as an LSSVM or as an MLP feature map, combining depth in terms of levels and layers. The classification level is expressed in its primal formulation, as the deep KPCA levels, in their dual formulation, can embed the most informative components of the data in a much lower dimensional space. The dual setting is independent of the dimension of the inputs and the primal setting is parametric, which makes the proposed method computationally efficient for both high-dimensional inputs and large datasets. In the experiments, we show that our developed algorithm can effectively learn from small datasets, while using less memory than the convolutional neural network (CNN) with high-dimensional data. and that models with multiple KPCA levels can outperform models with a single level. On the tested larger-scale datasets, DRKM is more energy efficient than CNN while maintaining comparable performance.

cs.LG↗

arXiv2023

A Dual Formulation for Probabilistic Principal Component Analysis

In this paper, we characterize Probabilistic Principal Component Analysis in Hilbert spaces and demonstrate how the optimal solution admits a representation in dual space. This allows us to develop a generative framework for kernel methods. Furthermore, we show how it englobes Kernel Principal Component Analysis and illustrate its working on a toy and a real dataset.

cs.LG↗

arXiv2023

Duality in Multi-View Restricted Kernel Machines

We propose a unifying setting that combines existing restricted kernel machine methods into a single primal-dual multi-view framework for kernel principal component analysis in both supervised and unsupervised settings. We derive the primal and dual representations of the framework and relate different training and inference algorithms from a theoretical perspective. We show how to achieve full equivalence in primal and dual formulations by rescaling primal variables. Finally, we experimentally validate the equivalence and provide insight into the relationships between different methods on a number of time series data sets by recursively forecasting unseen test data and visualizing the learned features.

cs.LG↗

arXiv2023

Unbalanced Optimal Transport: A Unified Framework for Object Detection

During training, supervised object detection tries to correctly match the predicted bounding boxes and associated classification scores to the ground truth. This is essential to determine which predictions are to be pushed towards which solutions, or to be discarded. Popular matching strategies include matching to the closest ground truth box (mostly used in combination with anchors), or matching via the Hungarian algorithm (mostly used in anchor-free methods). Each of these strategies comes with its own properties, underlying losses, and heuristics. We show how Unbalanced Optimal Transport unifies these different approaches and opens a whole continuum of methods in between. This allows for a finer selection of the desired properties. Experimentally, we show that training an object detection model with Unbalanced Optimal Transport is able to reach the state-of-the-art both in terms of Average Precision and Average Recall as well as to provide a faster initial convergence. The approach is well suited for GPU implementation, which proves to be an advantage for large-scale models.

cs.CV↗