arXiv subjects

Johan Karlsson

Publications and source records attributed to Johan Karlsson.

At least 37 records · Page 2Linked to original sources

arXiv2022

Orthogonalization of data via Gromov-Wasserstein type feedback for clustering and visualization

In this paper we propose an adaptive approach for clustering and visualization of data by an orthogonalization process. Starting with the data points being represented by a Markov process using the diffusion map framework, the method adaptively increase the orthogonality of the clusters by applying a feedback mechanism inspired by the Gromov-Wasserstein distance. This mechanism iteratively increases the spectral gap and refines the orthogonality of the data to achieve a clustering with high specificity. By using the diffusion map framework and representing the relation between data points using transition probabilities, the method is robust with respect to both the underlying distance, noise in the data and random initialization. We prove that the method converges globally to a unique fixpoint for certain parameter values. We also propose a related approach where the transition probabilities in the Markov process are required to be doubly stochastic, in which case the method generates a minimizer to a nonconvex optimization problem. We apply the method on cryo-electron microscopy image data from biopharmaceutical manufacturing where we can confirm biologically relevant insights related to therapeutic efficacy. We consider an example with morphological variations of gene packaging and confirm that the method produces biologically meaningful clustering results consistent with human expert classification.

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arXiv2021

On the complexity of the optimal transport problem with graph-structured cost

Multi-marginal optimal transport (MOT) is a generalization of optimal transport to multiple marginals. Optimal transport has evolved into an important tool in many machine learning applications, and its multi-marginal extension opens up for addressing new challenges in the field of machine learning. However, the usage of MOT has been largely impeded by its computational complexity which scales exponentially in the number of marginals. Fortunately, in many applications, such as barycenter or interpolation problems, the cost function adheres to structures, which has recently been exploited for developing efficient computational methods. In this work we derive computational bounds for these methods. With $m$ marginal distributions supported on $n$ points, we provide a $ \mathcal{\tilde O}(d(G)m n^2ε^{-2})$ bound for a $ε$-accuracy when the problem is associated with a tree with diameter $d(G)$. For the special case of the Wasserstein barycenter problem, which corresponds to a star-shaped tree, our bound is in alignment with the existing complexity bound for it.

cs.LG↗

arXiv2021

M$^2$-Spectral Estimation: A Flexible Approach Ensuring Rational Solutions

This paper concerns a spectral estimation problem for multivariate (i.e., vector-valued) signals defined on a multidimensional domain, abbreviated as M$^2$. The problem is posed as solving a finite number of trigonometric moment equations for a nonnegative matricial measure, which is well known as the \emph{covariance extension problem} in the literature of systems and control. This inverse problem and its various generalizations have been extensively studied in the past three decades, and they find applications in diverse fields such as modeling and system identification, signal and image processing, robust control, circuit theory, etc. In this paper, we address the challenging M$^2$ version of the problem, and elaborate on a solution technique via convex optimization with the $τ$-divergence family. As a major contribution of this work, we show that by properly choosing the parameter of the divergence index, the optimal spectrum is a rational function, that is, the solution is a spectral density which can be represented by a finite-dimensional system, as desired in many practical applications.

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arXiv2021

Quantifying and Computing Covariance Uncertainty

In this work, we consider the problem of bounding the values of a covariance function corresponding to a continuous-time stationary stochastic process or signal. Specifically, for two signals whose covariance functions agree on a finite discrete set of time-lags, we consider the maximal possible discrepancy of the covariance functions for real-valued time-lags outside this discrete grid. Computing this uncertainty corresponds to solving an infinite dimensional non-convex problem. However, we herein prove that the maximal objective value may be bounded from above by a finite dimensional convex optimization problem, allowing for efficient computation by standard methods. Furthermore, we empirically observe that for the case of signals whose spectra are supported on an interval, this upper bound is sharp, i.e., provides an exact quantification of the covariance uncertainty.

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arXiv2021

Mixed-Spectrum Signals -- Discrete Approximations and Variance Expressions for Covariance Estimates

The estimation of the covariance function of a stochastic process, or signal, is of integral importance for a multitude of signal processing applications. In this work, we derive closed-form expressions for the variance of covariance estimates for mixed-spectrum signals, i.e., spectra containing both absolutely continuous and singular parts. The results cover both finite-sample and asymptotic regimes, allowing for assessing the exact speed of convergence of estimates to their expectations, as well as their limiting behavior. As is shown, such covariance estimates may converge even for non-ergodic processes. Furthermore, we consider approximating signals with arbitrary spectral densities by sequences of singular spectrum, i.e., sinusoidal, processes, and derive the limiting behavior of covariance estimates as both the sample size and the number of sinusoidal components tend to infinity. We show that the asymptotic regime variance can be described by a time-frequency resolution product, with dramatically different behavior depending on how the sinusoidal approximation is constructed. In a few numerical examples we illustrate the theory and the corresponding implications for direction of arrival estimation.

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arXiv2021

Scalable computation of dynamic flow problems via multi-marginal graph-structured optimal transport

In this work, we develop a new framework for dynamic network flow problems based on optimal transport theory. We show that the dynamic multi-commodity minimum-cost network flow problem can be formulated as a multi-marginal optimal transport problem, where the cost function and the constraints on the marginals are associated with a graph structure. By exploiting these structures and building on recent advances in optimal transport theory, we develop an efficient method for such entropy-regularized optimal transport problems. In particular, the graph structure is utilized to efficiently compute the projections needed in the corresponding Sinkhorn iterations, and we arrive at a scheme that is both highly computationally efficient and easy to implement. To illustrate the performance of our algorithm, we compare it with a state-of-the-art Linear programming (LP) solver. We achieve good approximations to the solution at least one order of magnitude faster than the LP solver. Finally, we showcase the methodology on a traffic routing problem with a large number of commodities.

math.OC↗

arXiv2021

Multi-marginal Optimal Transport with a Tree-structured cost and the Schrödinger Bridge Problem

The optimal transport problem has recently developed into a powerful framework for various applications in estimation and control. Many of the recent advances in the theory and application of optimal transport are based on regularizing the problem with an entropy term, which connects it to the Schrödinger bridge problem and thus to stochastic optimal control. Moreover, the entropy regularization makes the otherwise computationally demanding optimal transport problem feasible even for large scale settings. This has lead to an accelerated development of optimal transport based methods in a broad range of fields. Many of these applications have a underlying graph structure, for instance information fusion and tracking problems can be described by trees. In this work we consider multi-marginal optimal transport problems with a cost function that decouples according to a tree structure. The entropy regularized multi-marginal optimal transport problem can be viewed as a generalization of the Schrödinger bridge problem with the same tree-structure, and by utilizing these connections we extend the computational methods for the classical optimal transport problem in order to solve structured multi-marginal optimal transport problems in an efficient manner. In particular, the algorithm requires only matrix-vector multiplications of relatively small dimensions. We show that the multi-marginal regularization introduces less diffusion, compared to the commonly used pairwise regularization, and is therefore more suitable for many applications. Numerical examples illustrate this, and we finally apply the proposed framework for tracking of an ensemble of indistinguishable agents.

math.OC↗

arXiv2020

On analytic interpolation with non-classical constraints for solving problems in robust control

In this work we consider robust stabilization of uncertain dynamical systems and show that this can be achieved by solving a non-classically constrained analytic interpolation problem. In particular, this non-classical constraint confines the range of the interpolant, when evaluated on the imaginary axis, to a frequency-dependent set. By considering a sufficient condition for when this interpolation problem has a solution, we derive an approximate solution algorithm that can also be used for controller synthesis. Finally, the theory is illustrated on a numerical example with a plant with uncertain gain, phase, and output delay.

math.OC↗

arXiv2020

An analytic interpolation approach to stability margins with emphasis on time delay

Unlike the situation with gain and phase margins in robust stabilization, the problem to determine an exact maximum delay margin is still an open problem, although extensive work has been done to establish upper and lower bounds. The problem is that the corresponding constraints in the Nyquist plot are frequency dependent, and encircling the point $s=-1$ has to be done at sufficiently low frequencies, as the possibility to do so closes at higher frequencies. In this paper we present a new method for determining a sharper lower bound by introducing a frequency-dependent shift. The problem of finding such a bound simultaneously with gain and phase margin constraints is also considered. In all these problems we take an analytic interpolation approach.

math.OC↗

arXiv2020

Inference with Aggregate Data: An Optimal Transport Approach

We consider inference (filtering) problems over probabilistic graphical models with aggregate data generated by a large population of individuals. We propose a new efficient belief propagation type algorithm over tree-structured graphs with polynomial computational complexity as well as a global convergence guarantee. This is in contrast to previous methods that either exhibit prohibitive complexity as the population grows or do not guarantee convergence. Our method is based on optimal transport, or more specifically, multi-marginal optimal transport theory. In particular, we consider an inference problem with aggregate observations, that can be seen as a structured multi-marginal optimal transport problem where the cost function decomposes according to the underlying graph. Consequently, the celebrated Sinkhorn/iterative scaling algorithm for multi-marginal optimal transport can be leveraged together with the standard belief propagation algorithm to establish an efficient inference scheme which we call Sinkhorn belief propagation (SBP). We further specialize the SBP algorithm to cases associated with hidden Markov models due to their significance in control and estimation. We demonstrate the performance of our algorithm on applications such as inferring population flow from aggregate observations. We also show that in the special case where the observations are generated by a single individual, our algorithm naturally reduces to the standard belief propagation algorithm.

cs.LG↗

arXiv2020

M$^2$-Spectral Estimation: A Relative Entropy Approach

This paper deals with M$^2$-signals, namely multivariate (or vector-valued) signals defined over a multidimensional domain. In particular, we propose an optimization technique to solve the covariance extension problem for stationary random vector fields. The multidimensional Itakura-Saito distance is employed as an optimization criterion to select the solution among the spectra satisfying a finite number of moment constraints. In order to avoid technicalities that may happen on the boundary of the feasible set, we deal with the discrete version of the problem where the multidimensional integrals are approximated by Riemann sums. The spectrum solution is also discrete, which occurs naturally when the underlying random field is periodic. We show that a solution to the discrete problem exists, is unique and depends smoothly on the problem data. Therefore, we have a well-posed problem whose solution can be tuned in a smooth manner. Finally, we have applied our theory to the target parameter estimation problem in an integrated system of automotive modules. Simulation results show that our spectral estimator has promising performance.

math.OC↗

arXiv2020

Incremental inference of collective graphical models

We consider incremental inference problems from aggregate data for collective dynamics. In particular, we address the problem of estimating the aggregate marginals of a Markov chain from noisy aggregate observations in an incremental (online) fashion. We propose a sliding window Sinkhorn belief propagation (SW-SBP) algorithm that utilizes a sliding window filter of the most recent noisy aggregate observations along with encoded information from discarded observations. Our algorithm is built upon the recently proposed multi-marginal optimal transport based SBP algorithm that leverages standard belief propagation and Sinkhorn algorithm to solve inference problems from aggregate data. We demonstrate the performance of our algorithm on applications such as inferring population flow from aggregate observations.

stat.ML↗

arXiv2020

Multi-marginal optimal transport and probabilistic graphical models

We study multi-marginal optimal transport problems from a probabilistic graphical model perspective. We point out an elegant connection between the two when the underlying cost for optimal transport allows a graph structure. In particular, an entropy regularized multi-marginal optimal transport is equivalent to a Bayesian marginal inference problem for probabilistic graphical models with the additional requirement that some of the marginal distributions are specified. This relation on the one hand extends the optimal transport as well as the probabilistic graphical model theories, and on the other hand leads to fast algorithms for multi-marginal optimal transport by leveraging the well-developed algorithms in Bayesian inference. Several numerical examples are provided to highlight the results.

math.OC↗

arXiv2020

Modeling collective behaviors: A moment-based approach

In this work we introduce an approach for modeling and analyzing collective behavior of a group of agents using moments. We represent the group of agents via their distribution and derive a method to estimate the dynamics of the moments. We use this to predict the evolution of the distribution of agents by first computing the moment trajectories and then use this to reconstruct the distribution of the agents. In the latter an inverse problem is solved in order to reconstruct a nominal distribution and to recover the macro-scale properties of the group of agents. The proposed method is applicable for several types of multi-agent systems, e.g., leader-follower systems. We derive error bounds for the moment trajectories and describe how to take these error bounds into account for computing the moment dynamics. The convergence of the moment dynamics is also analyzed for cases with monomial moments. To illustrate the theory, two numerical examples are given. In the first we consider a multi-agent system with interactions and compare the proposed methods for several types of moments. In the second example we apply the framework to a leader-follower problem for modeling pedestrian crowd dynamics.

math.OC↗

arXiv2020

Smart Resource Management for Data Streaming using an Online Bin-packing Strategy

Data stream processing frameworks provide reliable and efficient mechanisms for executing complex workflows over large datasets. A common challenge for the majority of currently available streaming frameworks is efficient utilization of resources. Most frameworks use static or semi-static settings for resource utilization that work well for established use cases but lead to marginal improvements for unseen scenarios. Another pressing issue is the efficient processing of large individual objects such as images and matrices typical for scientific datasets. HarmonicIO has proven to be a good solution for streams of relatively large individual objects, as demonstrated in a benchmark comparison with the Spark and Kafka streaming frameworks. We here present an extension of the HarmonicIO framework based on the online bin-packing algorithm, to allow for efficient utilization of resources. Based on a real world use case from large-scale microscopy pipelines, we compare results of the new system to Spark's auto-scaling mechanism.

cs.DC↗

arXiv2020

Estimating ensemble flows on a hidden Markov chain

We propose a new framework to estimate the evolution of an ensemble of indistinguishable agents on a hidden Markov chain using only aggregate output data. This work can be viewed as an extension of the recent developments in optimal mass transport and Schrödinger bridges to the finite state space hidden Markov chain setting. The flow of the ensemble is estimated by solving a maximum likelihood problem, which has a convex formulation at the infinite-particle limit, and we develop a fast numerical algorithm for it. We illustrate in two numerical examples how this framework can be used to track the flow of identical and indistinguishable dynamical systems.

math.OC↗

arXiv2019

Fusion of Sensors Data in Automotive Radar Systems: A Spectral Estimation Approach

To accurately estimate locations and velocities of surrounding targets (cars) is crucial for advanced driver assistance systems based on radar sensors. In this paper we derive methods for fusing data from multiple radar sensors in order to improve the accuracy and robustness of such estimates. First we pose the target estimation problem as a multivariate multidimensional spectral estimation problem. The problem is multivariate since each radar sensor gives rise to a measurement channel. Then we investigate how the use of the cross-spectra affects target estimates. We see that the use of the magnitude of the cross-spectrum significantly improves the accuracy of the target estimates, whereas an attempt to compensate the phase lag of the cross-spectrum only gives marginal improvement. This paper may be viewed as a first step towards applying high-resolution methods that builds on multidimensional multivariate spectral estimation for sensor fusion.

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arXiv2019

Interpolation and Extrapolation of Toeplitz Matrices via Optimal Mass Transport

In this work, we propose a novel method for quantifying distances between Toeplitz structured covariance matrices. By exploiting the spectral representation of Toeplitz matrices, the proposed distance measure is defined based on an optimal mass transport problem in the spectral domain. This may then be interpreted in the covariance domain, suggesting a natural way of interpolating and extrapolating Toeplitz matrices, such that the positive semi-definiteness and the Toeplitz structure of these matrices are preserved. The proposed distance measure is also shown to be contractive with respect to both additive and multiplicative noise, and thereby allows for a quantification of the decreased distance between signals when these are corrupted by noise. Finally, we illustrate how this approach can be used for several applications in signal processing. In particular, we consider interpolation and extrapolation of Toeplitz matrices, as well as clustering problems and tracking of slowly varying stochastic processes.

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