arXiv subjects

John D. Ilee

Publications and source records attributed to John D. Ilee.

At least 19 recordsLinked to original sources

arXiv2026

The ALMA View of the Edge-on Gomez's Hamburger System: A Highly-Dynamic, Asymmetric Protoplanetary Disk Reveals the Earliest Phases of Giant Planet Formation

Chemical tracers provide some of the strongest observational signatures of ongoing planet formation and localized dynamical perturbations in protoplanetary disks. In particular, sulfur-bearing molecules are predicted to be enhanced in regions of shock heating, ice sublimation, and gravitational instability. Here, we present high-angular-resolution ($\approx$0.$^{\prime\prime}$2) Atacama Large Millimeter/submillimeter Array observations of $^{12}$CO J=3-2, $^{13}$CO J=3-2, CS J=7-6, and SO J$_{\rm N}$=8$_8$-7$_7$ toward the large, edge-on Gomez's Hamburger ('GoHam'; IRAS 18059-3211) disk. We detect a narrow, one-sided arc of SO emission that peaks near a previously-identified gas over-density, suggesting localized heating around an early-stage giant protoplanet or disk fragment. The edge-on geometry of GoHam enables us to place this chemical signature in the broader context of the disk gas and dust structure. To do so, we map the vertical distribution of molecular gas relative to millimeter- and (sub)-micron-sized dust, identify a pronounced north-south continuum asymmetry, and detect non-Keplerian $^{12}$CO and $^{13}$CO emission indicative of a disk wind. We also derive a dynamical stellar mass of 2.2 $\pm$ 0.5 M$_{\odot}$ and a revised dust-extinction-map-based distance of 139 $\pm$ 24 pc, which places GoHam in the outskirts of the Scorpius-Centaurus association. Together, these observations reveal a highly dynamic disk in which localized sulfur chemistry may trace one of the earliest observable stages of wide-separation giant planet formation.

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arXiv2026

A JWST, ALMA and VLA survey of the Ophiuchus-A star-forming region: Unveiling hidden dust mass and connecting infrared outflows to their radio origins

We present an infrared, millimetre, and radio survey of 20 Class 0-III young stellar objects in the Ophiuchus A L1688 star-forming cluster, combining high-resolution (7-25 au) VLA and JWST observations with archival ALMA data. We implement physically motivated models to derive dust and ionised gas properties, spectral behaviour and their relative contributions through the millimetre-centimetre radio spectral energy distribution. Our models reveal circumstellar dust disks that are, on average, tens to hundreds of times more massive than millimetre-only estimates (subject to uncertainties arising from the choice of dust opacity) and contain millimetre-sized grains even at the Class 0 stage. Owing to the VLA's high resolution we are able to connect outflows to their origins, detecting protostellar jet emission on scales of 10s-1000s au. Our results represent a homogeneous characterisation of the dust and ionised gas properties in Ophiuchus and present a potential solution to the long-standing 'missing disk mass' problem. However, our understanding is still limited by resolution and sensitivity at frequencies <40 GHz. Future facilities like the SKA and ngVLA are needed to provide the necessary capabilities to fully spatially resolve this emission (<0.18") even in one of the closest star-forming regions.

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arXiv2026

Ionized gas emission in protoplanetary disks with the SKAO

Protoplanetary disks represent a crucial stage in the evolution of Young Stellar Objects towards the formation of fully formed planetary systems. While substantial progress has been made in the last decades in the characterization of the dust and molecular gas in these systems, the ionized component remains poorly understood. Ionized gas traces important processes such as photoevaporation, accretion, disk winds, and jets, and therefore is key to studying disk dynamics, evolution, and ultimately planet formation. In this paper, we investigate the capabilities of the forthcoming SKA telescope to probe this component in protoplanetary disks within nearby star forming regions. We present state-of-the-art simulations of photoevaporative, magneto-thermal, and magnetohydrodynamic winds, and generate theoretical predictions and synthetic SKAO observations to assess its potential in detecting and characterizing free-free emission and Hydrogen recombination lines. Finally, we discuss synergies with complementary facilities and how they will provide a comprehensive, multi-scale view of disk winds and offer critical insights on the mechanisms driving disk evolution and the onset of planet formation.

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arXiv2026

Substructures in Planet-Forming Disks with the SKAO

Disks of gas and dust orbiting young stars are the arenas and material reservoirs for planet formation. Over the past decade, multiwavelength observations, from infrared to radio, have resolved the spatial distribution of hundreds of protoplanetary disks in nearby star-forming regions, revealing a diverse zoo of substructures. These substructures are morphological features such as rings, gaps, spirals, vortices, asymmetries, warps, or clumps that trace variations in density, temperature, or composition relative to an otherwise smooth distribution of gas and dust. Many unknowns persist as to the origin of these substructures, their role in planet assembly, and their true properties. SKA-Mid Band 5b continuum observations, offering angular resolutions of $\sim 0.05''$ ($\sim 0.15''$) with AA4 (AA*) at $12.5$ GHz / $2.4$ cm, will enable new progress at this frontier. In this chapter, we outline the open questions in the field of disk substructure that SKA-Mid is uniquely poised to address, with a lens on dust thermal emission.

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arXiv2026

Demographics of planet-forming disks with the SKAO

Understanding how solid material in planet-forming disks evolves from micron-sized dust to planetary cores is a central challenge in modern astrophysics. This study has advanced dramatically in the past decade, largely driven by ALMA and high-contrast imaging facilities. However, major uncertainties remain regarding the presence, evolution, and role of centimeter-sized grains (the pebbles) in planet formation. The SKAO will fill this gap by enabling the first large-scale, high-resolution survey of disk emission at centimeter wavelengths. This chapter presents the scientific rationale and observational strategies to detect and characterize pebbles in the planet-forming disks of nearby star-forming regions. By resolving their spatial distribution, spectral properties, and evolutionary trends, SKA will offer essential constraints on dust growth and disk dynamics. This work provides observational strategies, target selection, and predictions on the detectability of hundreds of nearby disks. The chapter also explores SKA's potential to uncover the actual dust mass in disks, protoplanets and their circumplanetary disks, and other aspects of the planet formation. Together, these capabilities will establish SKAO as a cornerstone facility for planet formation science in the coming decade.

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arXiv2026

Chemical Complexity in the Early Stages of Star Formation in the SKAO Era

About 350 molecules have been identified in the interstellar medium (ISM), including complex molecules relevant to prebiotic chemistry. A remarkable level of molecular diversity has been observed from the earliest stages of star formation, providing the initial chemical inventory inherited by planetary systems. Radio observations have played a pivotal role in these discoveries, starting with the identification of the first polyatomic molecule, $\text{NH}_3$ (Cheung et al. 1968). (Sub-)millimeter observations have revealed complex organic molecules of prebiotic relevance, including formamide ($\text{NH}_2\text{CHO}$), glycolaldehyde ($\text{CH}_2\text{OHCHO}$), and even urea ($(\text{NH}_2)_2\text{CO}$), and hydroxylamine ($\text{NH}_2\text{OH}$), which are possible precursors of RNA nucleotides (Ceccarelli et al. 2023; Jiménez-Serra et al. 2020). However, in dense protostellar regions, dust opacity hampers the detection of molecular emission. Additionally, large molecules and those containing heavy atoms, which have rotational transitions at lower frequencies, often remain inaccessible to current instruments. The Square Kilometre Array Observatory (SKAO) will provide an unprecedented combination of sensitivity and angular resolution at radio wavelengths. This will allow for the detection of prebiotic species and offer new insights into the chemical pathways that shape emerging planetary systems (Jiménez-Serra et al. 2022). This chapter details the scientific questions and advancements that the SKAO, and more specifically, SKA-Mid equipped with the Band 5 receivers, will pursue in the field of astrochemistry, focusing on the chemical complexity in both high-mass and solar-type star-forming regions.

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arXiv2026

Unveiling Complex Chemistry in Planet-forming Disks with the SKAO

The chemical composition of planets is inherited from that of the natal protoplanetary disk at the time of planet formation. In recent years, we have made huge progress in characterizing disk chemistry. (Sub-)millimeter interferometers, such as ALMA, allowed us to detect emission lines from simple to complex organic molecules and to probe their radial and vertical distribution in disks. On the other hand, JWST has started to unveil the composition of disk ices, and line emission from the innermost disk regions. The advent of SKA will open new domains in the field, by observing emission lines from heavier molecules including heavy carbon chains and rings, and prebiotic molecules with peak emission in the cm range. Moreover, SKA will probe molecular emission from regions which are obscured by dust opacity at mm wavelengths, hence from the disk midplane, and often from the inner 30 au region. These observations will constrain the initial conditions for disk evolution and planet formation, allowing us to predict the chemical composition of the forming planets and their atmospheres. Comparison with forthcoming results on exoplanet atmospheres and on the chemistry of pristine bodies in the Solar System will provide new hints on the origin and evolution of planetary systems including our own.

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arXiv2026

Jets and Outflows in Young Stellar Objects with the SKAO

Jets and outflows are ubiquitous phenomena associated with the formation of young stellar objects (YSOs). They play a crucial role in removing angular momentum from the accreting system and in regulating star-formation efficiency. Theoretical studies and observations with ALMA and VLA have shown that jets and winds may have a crucial role in promoting dust growth in the envelope-disc system and in shaping the physical and chemical properties of the surrounding environment. Despite these significant advances, many fundamental questions remain unanswered regarding the acceleration, collimation, and chemical impact of jets and outflows from YSOs. The SKA-project will overcome the limitations of current mm/cm-facilities by enabling high-angular resolution and high-sensitivity cm-observations, crucial for probing jets/outflows near YSOs. Radio recombination lines, combined with proper motions, offer a unique opportunity to study the 3D-kinematics of jets. Non-thermal linearly polarised synchrotron emission will allow measuring magnetic field strength and morphology at unprecedented scales of a few au. Observations of dust emission in outflow cavities will allow studying how dust grows and is eventually transported from the disc to the envelope and back. Finally, the SKA-project will allow exploring the dust composition and chemical enrichment in shocks, where sputtering/shattering of grains cause the release of their mantles and refractory cores in the gas-phase. Complementary to ALMA's detection of simple and complex organic molecules, the SKAO will probe, for the first time, long carbon chains/rings, several Cl-, Al-, Mg-, and other metal-bearing species (missed by current sub-mm facilities).

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arXiv2026

An SMA Molecular Inventory of the Edge-on Protoplanetary Disk Gomez's Hamburger

Gomez's Hamburger (IRAS 18059-3211, GoHam) is a massive, edge-on protoplanetary disk that is potentially gravitationally unstable and hosts an overdensity that may be the site of a forming giant planet, making it a particularly interesting source for the study of planet formation in the direct collapse scenario. In this study, we present a molecular inventory of GoHam's disk combining several Submillimeter Array observations for a wideband survey at an angular resolution on the order of ~1 arcsecond. We detect 11 different molecules, including 15 individual lines, and measure their disk-integrated fluxes. We also infer column densities for several species over a range of fixed excitation temperatures. We find that the molecular inventory of GoHam and the inferred column densities for select molecules are broadly consistent with the general population of large protoplanetary disks. We explore the putative gravitational instability (GI) in GoHam's disk via possible enhancements in the gas-phase H$_2$CO abundance, but find no definitive evidence of GI. The results of this study can guide future, higher-resolution studies of GoHam, as well as efforts to characterize the giant protoplanet candidate GoHam b.

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arXiv2026

exoALMA XXII: A Two-dimensional Atlas of Deviations from Keplerian Disks

Protoplanetary disks are the birthplaces of planetary systems, and deviations from Keplerian rotation imprinted in disk gas kinematics serve as key tracers of physical processes and the presence of protoplanets within disks. Using the the CO (J=3-2) data from the exoALMA Large Program encompassing 15 disks, we constructed two-dimensional (2D) maps of centroid velocity, line width, and peak intensity, and extracted non-Keplerian deviations by subtracting smooth Keplerian models. This paper provides the first systematic and uniform overview of 2D gas substructures across the entire exoALMA sample. We find that all targets exhibit large-scale deviations from smooth Keplerian disks, displaying a variety of morphologies including spiral-like structures, arc- or ring-like features, and patterns indicative of variations in the emitting surface height. Non-axisymmetric spiral-arm features are detected or suggested in five disks (CQ Tau, MWC 758, HD 135344B, HD 34282, and SY Cha), and are preferentially found in Herbig Ae/Fe systems. In contrast, some other sources (J1852, PDS 66, and V4046 Sgr), despite exhibiting noticeable deviations, appear to be dynamically quieter. This 2D atlas suggests that kinematic substructures are ubiquitous in large ($\gtrsim$ 100 au) protoplanetary disks with ages of a few million years, based on the observations obtained with sufficient sensitivity at moderate-to-high spatial resolution of $\sim$20 au and high velocity resolution of $\sim$0.1 km s$^{-1}$.

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arXiv2026

exoALMA. XXIV. Formaldehyde Emission in Protoplanetary Disks of exoALMA Compared with Their Properties and Dynamical State

The presence of asymmetries and substructures in protoplanetary disks, revealed by both dust and gas emission, highlights the potential interplay and the broader connection between chemistry and dynamics in disk evolution. We explore multiple relationships using the nonparametric Kendall-$τ$ correlation to examine formaldehyde (H$_2$CO) emission with relation to stellar and disk properties for a subset of disks from the exoALMA sample. We also retrieve the H$_2$CO column density and excitation temperature using four transitions, measured in radial bins of 100 au, and quantify the level of asymmetry in the resolved peak intensity of the H$_2$CO emission. From our correlation analysis, we find no correlations with sufficient statistical significance. However, we identify tentative relationships that can be tested with larger samples. In particular, we report a proposed correlation ($2.1σ$) between stellar effective temperature and the formaldehyde excitation conditions, suggesting that, to first order, the central star dominates the nature of the H$_2$CO emission over possible dynamical asymmetries traced by dust. Although a correlation with the stellar luminosity was also expected, a larger sample is required to confirm or refute this trend. A possible correlation with spectral type, together with the broad range of H$_2$CO excitation temperatures within the inner 100 au of the studied disks, hint at possible multiple chemical formation pathways for H$_2$CO, including both gas-phase reactions and ice-surface chemistry on dust grains.

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arXiv2026

exoALMA XXI: The Morphology and Dynamics of Vertical Flows

Vertical gas flows, such as winds and meridional circulations, are natural outcomes of protoplanetary disk processes and play a critical role in the earliest stages of planet formation. We analyze vertical gas motions in 14 disks as part of the exoALMA Large Program, focusing on the 12CO J=3-2 and 13CO J=3-2 emission lines. Using discminer to model the Keplerian velocity field, we extract line-of-sight velocity residuals and measure the radial and vertical components of the gas motion. Vertical motions are detected in most disks. Two types of patterns emerge: (1) oscillatory up/down flows, likely linked to instabilities, and (2) transitions from downward to upward motions that we interpret as the base of a disk wind. In most cases, the velocity amplitudes are of a few tens of m/s. Two disks, however, MWC758 and CQ Tau, show two spiral velocity features in their residual maps, red- and blue-shifted, which we interpret as vertical velocities reaching up to 350 m/s (0.7 Cs), consistent with gas motion in eccentric disks. Fast upward motions (up to 500 m/s; 1.8 Cs) is also detected in the outer disk of MWC758. Synthetic observations from (magneto)hydrodynamic simulations validate the reliability of our method. Although strong molecular winds appear to be relatively rare in 12CO and 13CO, our study shows that, when traced by deep high spectral resolution line data, protoplanetary disks exhibit ubiquitous vertical flows. However, their overall velocity structure is highly complex, preventing to identify a coherent, dominant physical mechanism driving the vertical motions across all disks, thus requiring further theoretical investigation.

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arXiv2026

exoALMA XX: Tomographic Detection of Embedded Planets in Protoplanetary Disks

The exoALMA Large Program has revealed a wealth of substructures in the dust and molecular line emission of several protoplanetary discs, suggesting that planet formation may unfold within highly dynamic environments. Using synthetic observations of planet-disc interactions and disc instabilities, we demonstrate how the origin of these substructures can be investigated through a tomographic study of molecular lines, extending the scope of the analysis beyond line-centroid kinematics alone. Our results indicate that with only a few hours of ALMA integration at moderate angular resolution ($0.15''-0.30''$), it is possible to identify the key signatures driven by planets more massive than 0.1% of the stellar mass. These signatures manifest not only as deviations from Keplerian motion but also as localized line broadening, enabling accurate constraints on the orbital radius and azimuthal location of the planets. We further show that a diagnostic based on line skewness in spectrally resolved observations can help distinguish between planetary and instability-driven signatures, owing to the distinct degrees of velocity coherence associated with each mechanism. Finally, we apply this tomographic analysis to exoALMA CO line data for the discs of HD 135344B and MWC 758. In HD 135344B, we identify strongly localized velocity and line-width perturbations, suggesting the possibility of three massive planets embedded in the disc: one at $R=95$ au, exterior to the continuum substructures, and two within dust gaps at $R=41$ au and $R=73$ au. For MWC 758, the dominance of vertical-velocity spirals over localized signatures is consistent with predictions from models of moderate disc eccentricities or warps, potentially induced by a substellar companion in the inner regions of the system.

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arXiv2026

exoALMA XIX: Confirmation of Non-thermal Line Broadening in the DM Tau Protoplanetary Disk

Turbulence is expected to transport angular momentum and drive mass accretion in protoplanetary disks. One way to directly measure turbulent motion in disks is through molecular line broadening. DM Tau is one of only a few disks with claimed detection of nonthermal line broadening of 0.25cs-0.33cs, where cs is the sound speed. Using the radiative transfer code mcfost within a Bayesian inference framework that evaluates over five million disk models to efficiently sample the parameter space, we fit high-resolution (0.15", 28 m s-1) 12CO J = 3-2 observations of DM Tau from the exoALMA Large Program. This approach enables us to simultaneously constrain the disk structure and kinematics, revealing a significant nonthermal contribution to the line width of ~0.4cs, inconsistent with purely thermal motions. Using the CO-based disk structure as a starting point, we reproduce the CS J = 7-6 emission well, demonstrating that the CS (which is more sensitive to nonthermal motions than CO) agrees with the turbulence inferred from the CO fit. Establishing a well-constrained background disk model further allows us to identify residual structures in the moment maps that deviate from the expected emission, revealing localized perturbations that may trace forming planets. This framework provides a powerful general approach for extracting disk structure and nonthermal broadening directly from molecular line data and can be applied to other disks with high-quality observations.

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arXiv2025

Methanol emission tracing ice chemistry and dust evolution in the TW Hya protoplanetary disk

Methanol (CH$_{3}$OH) ice is abundant in space and is a key feedstock for seeding chemical complexity in interstellar and circumstellar environments. Despite its ubiquity, gas-phase methanol has only been detected in one disk around a Solar-type star to date, TW Hya. Here we present new high sensitivity (~1 mJy/beam) observations of TW Hya with ALMA that detect four individual transitions of gas-phase methanol spanning upper level energies from 17 to 38 K. We confirm the presence of gas-phase methanol in the luke-warm molecular layer of the disk ($35.9^{+25.9}_{-10.6}$ K) and with a disk-integrated column density of $1.8^{+1.3}_{-0.5}\times 10^{12}$ cm$^{-2}$. A radially-resolved analysis suggests that the gas-phase methanol is centrally compact, peaking within the spatial extent of the mm-sized dust grains ($\lesssim 80$ au). Static gas-grain chemical disk models confirm photodesorption as an important mechanism releasing methanol into the gas phase, with the column density further boosted by the inclusion of grain-surface chemistry, reactive desorption, and an increase in dust-grain surface area assuming fractal grains. However, no model can fully reproduce the observed column density nor the radial distribution, and we suggest that the inclusion of dynamic processes such as vertical mixing and radial drift would be required to do so. Our results demonstrate that the abundance and distribution of the precursors for complex chemistry in the planet-forming regions around Solar-type stars is ultimately controlled by the interplay of grain surface chemistry coupled with the evolution of dust in their disks.

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arXiv2025

exoALMA. XVIII. Interpreting large scale kinematic structures as moderate warping

The exoALMA program gave an unprecedented view of the complex kinematics of protoplanetary disks, revealing diverse structures that remain poorly understood. We show that moderate disk warps ($\sim 0.5-2^\circ$) can naturally explain many of the observed large-scale velocity features with azimuthal wavenumber $m = 1$. Using a simple model, we interpret line-of-sight velocity variations as changes in the projected Keplerian rotation caused by warping of the disk. While not a unique explanation, this interpretation aligns with growing observational evidence that warps are common. We demonstrate that such warps can also produce spiral structures in scattered light and CO brightness temperature, with $\sim 10$ K variations in MWC 758. Within the exoALMA sample, warp properties correlate with stellar accretion rates, suggesting a link between the inner disc and outer disc kinematics. If warps cause large-scale kinematic structure, this has far reaching implications for turbulence, angular momentum transport, and planet formation.

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arXiv2025

SO emission in the dynamically perturbed protoplanetary disks around CQ Tau and MWC 758

We report the serendipitous detection of the SO $J_N=6_5-5_4$ (219.949 GHz) rotational transition in archival Atacama Large Millimeter/submillimeter Array (ALMA) observations of the spiral hosting protoplanetary disks around CQ Tau (with $\approx4.9σ$ significance) and MWC 758 (with $\approx3.4σ$ significance). In the former, the SO emission comes in the shape of a ring, arises from the edge of the continuum cavity, and is qualitatively consistent, at the currently available spectral resolution, with being in Keplerian rotation. In the latter, instead, while arising primarily from inside the continuum cavity, the SO emission also extends to the continuum ring(s), and its morphology and kinematics are less clear. We put these sources in the context of the other protoplanetary disks where SO detections have been previously reported in the literature and discuss the possible origins of SO in terms of (thermal) desorption or formation in the gas phase. We argue that these processes might be fostered by dynamical perturbations caused by unseen embedded massive companions, shadows, or late-time infall, thus suggesting a possible link between perturbed dynamics and SO emission in (these) protoplanetary disks. If confirmed, our interpretation would imply that chemical evolution timescales could be significantly shorter in these systems than is commonly assumed, indicating that dynamical perturbations might influence the composition of newborn (proto-)planets by altering the volatile makeup of their formation environment.

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arXiv2025

ExoALMA XIII. gas masses from N2H+ and C18O: a comparison of protoplanetary gas disk mass measurement techniques

The gas masses of protoplanetary disks are important but elusive quantities. In this work we present new ALMA observations of N2H+ (3-2) for 11 exoALMA disks. N2H+ is a molecule sensitive to CO freeze-out and has recently been shown to significantly improve the accuracy of gas masses estimated from CO line emission. We combine these new observations with archival N2H+ and CO isotopologue observations to measure gas masses for 19 disks, predominantly from the exoALMA Large program. For 15 of these disks the gas mass has also been measured using gas rotation curves. We show that the CO + N2H+ line emission-based gas masses typically agree with the kinematically measured ones within a factor 3 (1-2σ). Gas disk masses from CO + N2H+ are on average a factor 2.3(+0.7,-1.0) x lower than the kinematic disk masses, which could suggest slightly lower N2 abundances and/or lower midplane ionization rates than typically assumed. Herbig disks are found to have ISM level CO gas abundances based on their CO and N2H+ fluxes, which sets them apart from T-Tauri disks where abundances are typically 3-30x lower. The agreement between CO + N2H+ -based and kinematically measured gas masses is promising and shows that multi-molecule line fluxes are a robust tool to accurately measure disk masses at least for extended disks.

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