arXiv subjects

John Paisley

Publications and source records attributed to John Paisley.

At least 73 records · Page 4Linked to original sources

arXiv2019

Random Function Priors for Correlation Modeling

The likelihood model of high dimensional data $X_n$ can often be expressed as $p(X_n|Z_n,θ)$, where $θ\mathrel{\mathop:}=(θ_k)_{k\in[K]}$ is a collection of hidden features shared across objects, indexed by $n$, and $Z_n$ is a non-negative factor loading vector with $K$ entries where $Z_{nk}$ indicates the strength of $θ_k$ used to express $X_n$. In this paper, we introduce random function priors for $Z_n$ for modeling correlations among its $K$ dimensions $Z_{n1}$ through $Z_{nK}$, which we call \textit{population random measure embedding} (PRME). Our model can be viewed as a generalized paintbox model~\cite{Broderick13} using random functions, and can be learned efficiently with neural networks via amortized variational inference. We derive our Bayesian nonparametric method by applying a representation theorem on separately exchangeable discrete random measures.

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arXiv2019

Rain O'er Me: Synthesizing real rain to derain with data distillation

We present a supervised technique for learning to remove rain from images without using synthetic rain software. The method is based on a two-stage data distillation approach: 1) A rainy image is first paired with a coarsely derained version using on a simple filtering technique ("rain-to-clean"). 2) Then a clean image is randomly matched with the rainy soft-labeled pair. Through a shared deep neural network, the rain that is removed from the first image is then added to the clean image to generate a second pair ("clean-to-rain"). The neural network simultaneously learns to map both images such that high resolution structure in the clean images can inform the deraining of the rainy images. Demonstrations show that this approach can address those visual characteristics of rain not easily synthesized by software in the usual way.

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arXiv2019

An Adversarial Learning Approach to Medical Image Synthesis for Lesion Detection

The identification of lesion within medical image data is necessary for diagnosis, treatment and prognosis. Segmentation and classification approaches are mainly based on supervised learning with well-paired image-level or voxel-level labels. However, labeling the lesion in medical images is laborious requiring highly specialized knowledge. We propose a medical image synthesis model named abnormal-to-normal translation generative adversarial network (ANT-GAN) to generate a normal-looking medical image based on its abnormal-looking counterpart without the need for paired training data. Unlike typical GANs, whose aim is to generate realistic samples with variations, our more restrictive model aims at producing a normal-looking image corresponding to one containing lesions, and thus requires a special design. Being able to provide a "normal" counterpart to a medical image can provide useful side information for medical imaging tasks like lesion segmentation or classification validated by our experiments. In the other aspect, the ANT-GAN model is also capable of producing highly realistic lesion-containing image corresponding to the healthy one, which shows the potential in data augmentation verified in our experiments.

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arXiv2019

Fully Supervised Speaker Diarization

In this paper, we propose a fully supervised speaker diarization approach, named unbounded interleaved-state recurrent neural networks (UIS-RNN). Given extracted speaker-discriminative embeddings (a.k.a. d-vectors) from input utterances, each individual speaker is modeled by a parameter-sharing RNN, while the RNN states for different speakers interleave in the time domain. This RNN is naturally integrated with a distance-dependent Chinese restaurant process (ddCRP) to accommodate an unknown number of speakers. Our system is fully supervised and is able to learn from examples where time-stamped speaker labels are annotated. We achieved a 7.6% diarization error rate on NIST SRE 2000 CALLHOME, which is better than the state-of-the-art method using spectral clustering. Moreover, our method decodes in an online fashion while most state-of-the-art systems rely on offline clustering.

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arXiv2019

Global Explanations of Neural Networks: Mapping the Landscape of Predictions

A barrier to the wider adoption of neural networks is their lack of interpretability. While local explanation methods exist for one prediction, most global attributions still reduce neural network decisions to a single set of features. In response, we present an approach for generating global attributions called GAM, which explains the landscape of neural network predictions across subpopulations. GAM augments global explanations with the proportion of samples that each attribution best explains and specifies which samples are described by each attribution. Global explanations also have tunable granularity to detect more or fewer subpopulations. We demonstrate that GAM's global explanations 1) yield the known feature importances of simulated data, 2) match feature weights of interpretable statistical models on real data, and 3) are intuitive to practitioners through user studies. With more transparent predictions, GAM can help ensure neural network decisions are generated for the right reasons.

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arXiv2018

Mixed Membership Recurrent Neural Networks

Models for sequential data such as the recurrent neural network (RNN) often implicitly model a sequence as having a fixed time interval between observations and do not account for group-level effects when multiple sequences are observed. We propose a model for grouped sequential data based on the RNN that accounts for varying time intervals between observations in a sequence by learning a group-level base parameter to which each sequence can revert. Our approach is motivated by the mixed membership framework, and we show how it can be used for dynamic topic modeling in which the distribution on topics (not the topics themselves) are evolving in time. We demonstrate our approach on a dataset of 3.4 million online grocery shopping orders made by 206K customers.

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arXiv2018

Adaptive and Calibrated Ensemble Learning with Dependent Tail-free Process

Ensemble learning is a mainstay in modern data science practice. Conventional ensemble algorithms assigns to base models a set of deterministic, constant model weights that (1) do not fully account for variations in base model accuracy across subgroups, nor (2) provide uncertainty estimates for the ensemble prediction, which could result in mis-calibrated (i.e. precise but biased) predictions that could in turn negatively impact the algorithm performance in real-word applications. In this work, we present an adaptive, probabilistic approach to ensemble learning using dependent tail-free process as ensemble weight prior. Given input feature $\mathbf{x}$, our method optimally combines base models based on their predictive accuracy in the feature space $\mathbf{x} \in \mathcal{X}$, and provides interpretable uncertainty estimates both in model selection and in ensemble prediction. To encourage scalable and calibrated inference, we derive a structured variational inference algorithm that jointly minimize KL objective and the model's calibration score (i.e. Continuous Ranked Probability Score (CRPS)). We illustrate the utility of our method on both a synthetic nonlinear function regression task, and on the real-world application of spatio-temporal integration of particle pollution prediction models in New England.

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arXiv2018

Towards Explainable Deep Learning for Credit Lending: A Case Study

Deep learning adoption in the financial services industry has been limited due to a lack of model interpretability. However, several techniques have been proposed to explain predictions made by a neural network. We provide an initial investigation into these techniques for the assessment of credit risk with neural networks.

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arXiv2018

A Deep Tree-Structured Fusion Model for Single Image Deraining

We propose a simple yet effective deep tree-structured fusion model based on feature aggregation for the deraining problem. We argue that by effectively aggregating features, a relatively simple network can still handle tough image deraining problems well. First, to capture the spatial structure of rain we use dilated convolutions as our basic network block. We then design a tree-structured fusion architecture which is deployed within each block (spatial information) and across all blocks (content information). Our method is based on the assumption that adjacent features contain redundant information. This redundancy obstructs generation of new representations and can be reduced by hierarchically fusing adjacent features. Thus, the proposed model is more compact and can effectively use spatial and content information. Experiments on synthetic and real-world datasets show that our network achieves better deraining results with fewer parameters.

cs.CV↗

arXiv2018

MBA: Mini-Batch AUC Optimization

Area under the receiver operating characteristics curve (AUC) is an important metric for a wide range of signal processing and machine learning problems, and scalable methods for optimizing AUC have recently been proposed. However, handling very large datasets remains an open challenge for this problem. This paper proposes a novel approach to AUC maximization, based on sampling mini-batches of positive/negative instance pairs and computing U-statistics to approximate a global risk minimization problem. The resulting algorithm is simple, fast, and learning-rate free. We show that the number of samples required for good performance is independent of the number of pairs available, which is a quadratic function of the positive and negative instances. Extensive experiments show the practical utility of the proposed method.

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arXiv2018

Lightweight Pyramid Networks for Image Deraining

Existing deep convolutional neural networks have found major success in image deraining, but at the expense of an enormous number of parameters. This limits their potential application, for example in mobile devices. In this paper, we propose a lightweight pyramid of networks (LPNet) for single image deraining. Instead of designing a complex network structures, we use domain-specific knowledge to simplify the learning process. Specifically, we find that by introducing the mature Gaussian-Laplacian image pyramid decomposition technology to the neural network, the learning problem at each pyramid level is greatly simplified and can be handled by a relatively shallow network with few parameters. We adopt recursive and residual network structures to build the proposed LPNet, which has less than 8K parameters while still achieving state-of-the-art performance on rain removal. We also discuss the potential value of LPNet for other low- and high-level vision tasks.

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arXiv2018

Joint CS-MRI Reconstruction and Segmentation with a Unified Deep Network

The need for fast acquisition and automatic analysis of MRI data is growing in the age of big data. Although compressed sensing magnetic resonance imaging (CS-MRI) has been studied to accelerate MRI by reducing k-space measurements, in current CS-MRI techniques MRI applications such as segmentation are overlooked when doing image reconstruction. In this paper, we test the utility of CS-MRI methods in automatic segmentation models and propose a unified deep neural network architecture called SegNetMRI which we apply to the combined CS-MRI reconstruction and segmentation problem. SegNetMRI is built upon a MRI reconstruction network with multiple cascaded blocks each containing an encoder-decoder unit and a data fidelity unit, and MRI segmentation networks having the same encoder-decoder structure. The two subnetworks are pre-trained and fine-tuned with shared reconstruction encoders. The outputs are merged into the final segmentation. Our experiments show that SegNetMRI can improve both the reconstruction and segmentation performance when using compressive measurements.

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arXiv2018

A Deep Information Sharing Network for Multi-contrast Compressed Sensing MRI Reconstruction

In multi-contrast magnetic resonance imaging (MRI), compressed sensing theory can accelerate imaging by sampling fewer measurements within each contrast. The conventional optimization-based models suffer several limitations: strict assumption of shared sparse support, time-consuming optimization and "shallow" models with difficulties in encoding the rich patterns hiding in massive MRI data. In this paper, we propose the first deep learning model for multi-contrast MRI reconstruction. We achieve information sharing through feature sharing units, which significantly reduces the number of parameters. The feature sharing unit is combined with a data fidelity unit to comprise an inference block. These inference blocks are cascaded with dense connections, which allows for information transmission across different depths of the network efficiently. Our extensive experiments on various multi-contrast MRI datasets show that proposed model outperforms both state-of-the-art single-contrast and multi-contrast MRI methods in accuracy and efficiency. We show the improved reconstruction quality can bring great benefits for the later medical image analysis stage. Furthermore, the robustness of the proposed model to the non-registration environment shows its potential in real MRI applications.

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arXiv2018

A Segmentation-aware Deep Fusion Network for Compressed Sensing MRI

Compressed sensing MRI is a classic inverse problem in the field of computational imaging, accelerating the MR imaging by measuring less k-space data. The deep neural network models provide the stronger representation ability and faster reconstruction compared with "shallow" optimization-based methods. However, in the existing deep-based CS-MRI models, the high-level semantic supervision information from massive segmentation-labels in MRI dataset is overlooked. In this paper, we proposed a segmentation-aware deep fusion network called SADFN for compressed sensing MRI. The multilayer feature aggregation (MLFA) method is introduced here to fuse all the features from different layers in the segmentation network. Then, the aggregated feature maps containing semantic information are provided to each layer in the reconstruction network with a feature fusion strategy. This guarantees the reconstruction network is aware of the different regions in the image it reconstructs, simplifying the function mapping. We prove the utility of the cross-layer and cross-task information fusion strategy by comparative study. Extensive experiments on brain segmentation benchmark MRBrainS validated that the proposed SADFN model achieves state-of-the-art accuracy in compressed sensing MRI. This paper provides a novel approach to guide the low-level visual task using the information from mid- or high-level task.

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arXiv2018

A Divide-and-Conquer Approach to Compressed Sensing MRI

Compressed sensing (CS) theory assures us that we can accurately reconstruct magnetic resonance images using fewer k-space measurements than the Nyquist sampling rate requires. In traditional CS-MRI inversion methods, the fact that the energy within the Fourier measurement domain is distributed non-uniformly is often neglected during reconstruction. As a result, more densely sampled low-frequency information tends to dominate penalization schemes for reconstructing MRI at the expense of high-frequency details. In this paper, we propose a new framework for CS-MRI inversion in which we decompose the observed k-space data into "subspaces" via sets of filters in a lossless way, and reconstruct the images in these various spaces individually using off-the-shelf algorithms. We then fuse the results to obtain the final reconstruction. In this way we are able to focus reconstruction on frequency information within the entire k-space more equally, preserving both high and low frequency details. We demonstrate that the proposed framework is competitive with state-of-the-art methods in CS-MRI in terms of quantitative performance, and often improves an algorithm's results qualitatively compared with it's direct application to k-space.

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arXiv2018

A Deep Error Correction Network for Compressed Sensing MRI

Compressed sensing for magnetic resonance imaging (CS-MRI) exploits image sparsity properties to reconstruct MRI from very few Fourier k-space measurements. The goal is to minimize any structural errors in the reconstruction that could have a negative impact on its diagnostic quality. To this end, we propose a deep error correction network (DECN) for CS-MRI. The DECN model consists of three parts, which we refer to as modules: a guide, or template, module, an error correction module, and a data fidelity module. Existing CS-MRI algorithms can serve as the template module for guiding the reconstruction. Using this template as a guide, the error correction module learns a convolutional neural network (CNN) to map the k-space data in a way that adjusts for the reconstruction error of the template image. Our experimental results show the proposed DECN CS-MRI reconstruction framework can considerably improve upon existing inversion algorithms by supplementing with an error-correcting CNN.

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arXiv2017

Online Forecasting Matrix Factorization

In this paper the problem of forecasting high dimensional time series is considered. Such time series can be modeled as matrices where each column denotes a measurement. In addition, when missing values are present, low rank matrix factorization approaches are suitable for predicting future values. This paper formally defines and analyzes the forecasting problem in the online setting, i.e. where the data arrives as a stream and only a single pass is allowed. We present and analyze novel matrix factorization techniques which can learn low-dimensional embeddings effectively in an online manner. Based on these embeddings a recursive minimum mean square error estimator is derived, which learns an autoregressive model on them. Experiments with two real datasets with tens of millions of measurements show the benefits of the proposed approach.

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arXiv2017

Variational Inference via $χ$-Upper Bound Minimization

Variational inference (VI) is widely used as an efficient alternative to Markov chain Monte Carlo. It posits a family of approximating distributions $q$ and finds the closest member to the exact posterior $p$. Closeness is usually measured via a divergence $D(q || p)$ from $q$ to $p$. While successful, this approach also has problems. Notably, it typically leads to underestimation of the posterior variance. In this paper we propose CHIVI, a black-box variational inference algorithm that minimizes $D_χ(p || q)$, the $χ$-divergence from $p$ to $q$. CHIVI minimizes an upper bound of the model evidence, which we term the $χ$ upper bound (CUBO). Minimizing the CUBO leads to improved posterior uncertainty, and it can also be used with the classical VI lower bound (ELBO) to provide a sandwich estimate of the model evidence. We study CHIVI on three models: probit regression, Gaussian process classification, and a Cox process model of basketball plays. When compared to expectation propagation and classical VI, CHIVI produces better error rates and more accurate estimates of posterior variance.

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