arXiv subjects

Jon S. Heiselman

Publications and source records attributed to Jon S. Heiselman.

6 recordsLinked to original sources

arXiv2026

Marker-free deformable registration and fusion for augmented reality-guided positive margin localization during tumor resection surgery

Positive margins in head and neck oncologic surgery require mapping specimen-side pathology findings to the patient resection bed. This is challenging because pathologists identify the positive margin on slices of the resected, deformed specimen, while surgeons must relocate the corresponding site on the resection bed using only verbal descriptions and no visual guidance. We present a marker-free augmented reality (AR) workflow for mapping a margin label from a three-dimensional specimen scan to the resection bed. The method combines contour-constrained deformation, residual alignment to a depth scan, surface-based fusion to a head-mounted display, and target projection onto the reconstructed bed. Bead-suture correspondences estimate specimen deformation, whereas patient-to-display fusion does not require external fiducial markers. Following formative experiments, five residents and surgeons performed cadaveric cheek and scalp re-resection tasks under verbal guidance, verbal guidance with specimen examination, and AR guidance. Deformation target errors were $7.63 \pm 3.74$ mm for the cheek and $3.72 \pm 1.02$ mm for the scalp; residual specimen-to-bed distances were $2.43 \pm 2.15$ mm and $2.19 \pm 1.06$ mm, respectively. Fusion error did not differ significantly between marker-free and marker-based methods on either cadaver; overall marker-free fusion error was $2.15 \pm 0.87$ mm. End-to-end margin localization error decreased from $21.40 \pm 3.84$ mm with verbal guidance and $16.09 \pm 4.30$ mm with specimen examination to $6.19 \pm 1.79$ mm with AR guidance ($p < 0.001$). Online fusion required $5.23 \pm 0.34$ s. These results demonstrate effective marker-free AR guidance for positive-margin localization and support more precise tumor resection.

cs.CV↗

arXiv2026

Contour-Constrained Deformable Registration with Parameter Characterization for Head and Neck Surgical Guidance

With 890,000 annual new cases globally, head and neck squamous cell carcinoma has one of the highest recurrence rates among solid malignancies. Although frozen section analysis is the standard of care for intraoperative margin assessment, accurately relocating detected positive margins on the resection bed remains challenging due to imprecise alignment between resected specimens and their resection bed, compounded by post-resection mucosal tissue shrinkage. We present a biomechanics-driven deformable registration framework that corrects post-resection tissue deformation to provide intraoperative guidance. Our approach registers 3D specimen meshes to intraoperative resection bed point clouds using a deformable registration approach based on regularized Kelvinlet basis functions. The registration matches surface point clouds, fiducial landmarks, and boundary contour constraints that directly penalize perpendicular distance-to-agreement between specimen and resection bed boundaries. Across nine specimens from skin, buccal mucosa, and tongue sites, the overall mean target registration error was $11.11 \pm 4.07$ mm using rigid registration, which decreased to $8.20 \pm 2.68$ mm (26.19\% reduction) using deformable registration without contour constraint. The proposed contour-constrained deformable registration further reduced the error to $5.62 \pm 2.28$ mm, a 49.41\% reduction relative to rigid registration. We observed the largest reduction in the most clinically challenging tongue specimens. We also performed a systematic two-stage parameter search to characterize the relative importance of surface alignment, fiducial correspondences, contour constraint, and strain energy regularization. This search revealed that contour weighting dominates registration accuracy for tissue types with large lateral deformation, while the algorithm operates over a broad range of parameter combinations.

eess.IV↗

arXiv2026

SurgFormer: Scalable Learning of Organ Deformation with Resection Support and Real-Time Inference

We introduce SurgFormer, a multiresolution gated transformer for data driven soft tissue simulation on volumetric meshes. High fidelity biomechanical solvers are often too costly for interactive use, so we train SurgFormer on solver generated data to predict nodewise displacement fields at near real time rates. SurgFormer builds a fixed mesh hierarchy and applies repeated multibranch blocks that combine local message passing, coarse global self attention, and pointwise feedforward updates, fused by learned per node, per channel gates to adaptively integrate local and long range information while remaining scalable on large meshes. For cut conditioned simulation, resection information is encoded as a learned cut embedding and provided as an additional input, enabling a unified model for both standard deformation prediction and topology altering cases. We also introduce two surgical simulation datasets generated under a unified protocol with XFEM based supervision: a cholecystectomy resection dataset and an appendectomy manipulation and resection dataset with cut and uncut cases. To our knowledge, this is the first learned volumetric surrogate setting to study XFEM supervised cut conditioned deformation within the same volumetric pipeline as standard deformation prediction. Across diverse baselines, SurgFormer achieves strong accuracy with favorable efficiency, making it a practical backbone for both tasks. {Code, data, and project page: \href{https://mint-vu.github.io/SurgFormer/}{available here}}

cs.CV↗

arXiv2025

Neural-Augmented Kelvinlet for Real-Time Soft Tissue Deformation Modeling

Accurate and efficient modeling of soft-tissue interactions is fundamental for advancing surgical simulation, surgical robotics, and model-based surgical automation. To achieve real-time latency, classical Finite Element Method (FEM) solvers are often replaced with neural approximations; however, naively training such models in a fully data-driven manner without incorporating physical priors frequently leads to poor generalization and physically implausible predictions. We present a novel physics-informed neural simulation framework that enables real-time prediction of soft-tissue deformations under complex single- and multi-grasper interactions. Our approach integrates Kelvinlet-based analytical priors with large-scale FEM data, capturing both linear and nonlinear tissue responses. This hybrid design improves predictive accuracy and physical plausibility across diverse neural architectures while maintaining the low-latency performance required for interactive applications. We validate our method on challenging surgical manipulation tasks involving standard laparoscopic grasping tools, demonstrating substantial improvements in deformation fidelity and temporal stability over existing baselines. These results establish Kelvinlet-augmented learning as a principled and computationally efficient paradigm for real-time, physics-aware soft-tissue simulation in surgical AI.

cs.GR↗

arXiv2024

Resolving the Ambiguity of Complete-to-Partial Point Cloud Registration for Image-Guided Liver Surgery with Patches-to-Partial Matching

In image-guided liver surgery, the initial rigid alignment between preoperative and intraoperative data, often represented as point clouds, is crucial for providing sub-surface information from preoperative CT/MRI images to the surgeon during the procedure. Currently, this alignment is typically performed using semi-automatic methods, which, while effective to some extent, are prone to errors that demand manual correction. Point cloud correspondence-based registration methods are promising to serve as a fully automatic solution. However, they may struggle in scenarios with limited intraoperative surface visibility, a common challenge in liver surgery, particularly in laparoscopic procedures, which we refer to as complete-to-partial ambiguity. We first illustrate this ambiguity by evaluating the performance of state-of-the-art learning-based point cloud registration methods on our carefully constructed in silico and in vitro datasets. Then, we propose a patches-to-partial matching strategy as a plug-and-play module to resolve the ambiguity, which can be seamlessly integrated into learning-based registration methods without disrupting their end-to-end structure. It has proven effective and efficient in improving registration performance for cases with limited intraoperative visibility. The constructed benchmark and the proposed module establish a solid foundation for advancing applications of point cloud correspondence-based registration methods in image-guided liver surgery.

cs.CV↗

arXiv2023

Patient-specific computational forecasting of prostate cancer growth during active surveillance using an imaging-informed biomechanistic model

Active surveillance (AS) is a suitable management option for newly-diagnosed prostate cancer (PCa), which usually presents low to intermediate clinical risk. Patients enrolled in AS have their tumor closely monitored via longitudinal multiparametric magnetic resonance imaging (mpMRI), serum prostate-specific antigen tests, and biopsies. Hence, the patient is prescribed treatment when these tests identify progression to higher-risk PCa. However, current AS protocols rely on detecting tumor progression through direct observation according to standardized monitoring strategies. This approach limits the design of patient-specific AS plans and may lead to the late detection and treatment of tumor progression. Here, we propose to address these issues by leveraging personalized computational predictions of PCa growth. Our forecasts are obtained with a spatiotemporal biomechanistic model informed by patient-specific longitudinal mpMRI data. Our results show that our predictive technology can represent and forecast the global tumor burden for individual patients, achieving concordance correlation coefficients ranging from 0.93 to 0.99 across our cohort (n=7). Additionally, we identify a model-based biomarker of higher-risk PCa: the mean proliferation activity of the tumor (p=0.041). Using logistic regression, we construct a PCa risk classifier based on this biomarker that achieves an area under the receiver operating characteristic curve of 0.83. We further show that coupling our tumor forecasts with this PCa risk classifier enables the early identification of PCa progression to higher-risk disease by more than one year. Thus, we posit that our predictive technology constitutes a promising clinical decision-making tool to design personalized AS plans for PCa patients.

q-bio.TO↗