arXiv subjects

Jonas Kellerer

Publications and source records attributed to Jonas Kellerer.

3 recordsLinked to original sources

arXiv2025

KARL -- A Monte Carlo model for atomic and molecular processes in the tritium atmosphere of the KATRIN experiment

A new parallelized simulation code is presented, which uses a Monte Carlo method to determine particle spectra in the KATRIN source. Reaction chains are generated from the decay of tritium within the source. The code includes all relevant processes: elastic scattering, ionization, excitation (electric, vibrational, rotational), recombination and various clustering processes. The main emphasis of the code is the calculation of particle spectra and particle densities and currents at specific points within the source. It features a new technique to determine these quantities. It also calculates target fields for the interaction of particles with each other as it is needed for recombination processes. The code has been designed for the KATRIN experiment but is easily adapt-able for other tritium based experiments like Project 8. Geometry and background tritium gas flow can be given as user input. The code is parallelized using MPI and writes output using HDF5. Input to the simulation is read from a JSON description.

physics.comp-ph↗

arXiv2023

LAPIS is a fast web API for massive open virus sequencing databases

Background: Recent epidemic outbreaks such as the SARS-CoV-2 pandemic and the mpox outbreak in 2022 have demonstrated the value of genomic sequencing data for tracking the origin and spread of pathogens. Laboratories around the globe generated new sequences at unprecedented speed and volume and bioinformaticians developed new tools and dashboards to analyze this wealth of data. However, a major challenge that remains is the lack of simple and efficient approaches for accessing and processing sequencing data. Results: The Lightweight API for Sequences (LAPIS) facilitates rapid retrieval and analysis of genomic sequencing data through a REST API. It supports complex mutation- and metadata-based queries and can perform aggregation operations on massive datasets. LAPIS is optimized for typical questions relevant to genomic epidemiology. Using a newly-developed in-memory database engine, it has a high speed and throughput: between 25 January and 4 February 2023, the SARS-CoV-2 instance of LAPIS, which contains 14.5 million sequences, processed over 20 million requests with a mean response time of 411 ms and a median response time of 1 ms. LAPIS is the core engine behind our dashboards on genspectrum.org and we currently maintain public LAPIS instances for SARS-CoV-2 and mpox. Conclusions: Powered by an optimized database engine and available through a web API, LAPIS enhances the accessibility of genomic sequencing data. It is designed to serve as a common backend for dashboards and analyses with the potential to be integrated into common database platforms such as GenBank.

q-bio.GN↗

arXiv2022

Monte Carlo simulations of the electron-gas interactions in the KATRIN experiment

At the KATRIN experiment, the electron antineutrino mass is inferred from the shape of the $β$-decay spectrum of tritium. Important systematic effects in the Windowless Gaseous Tritium Source (WGTS) of the experiment include the energy loss by electron scattering, and the extended starting potential. In the WGTS, primary high-energy electrons from $β$-decay produce an extended secondary spectrum of electrons through various atomic and molecular processes including ionization, recombination, cluster formation and scattering. In addition to providing data essential to the simulation of energy loss processes, the electron spectrum also provides information important in the simulation of plasma processes. These simulations will then provide an insight on the starting potential. Here, a Monte Carlo approach is used to model the electron spectrum in the source for a given magnetic and electric field configuration. The spectrum is evaluated at different positions within the WGTS, which allows for a direct analysis of the spectrum close to the rear wall and detector end of the experiment. Alongside electrons, also ions are tracked by the simulation, resulting in a full description of the currents in the source.

astro-ph.IM↗