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Jonathan Chardin

Publications and source records attributed to Jonathan Chardin.

At least 19 recordsLinked to original sources

Reionisation time fields reconstruction from 21 cm signal maps

During the Epoch of reionisation, the intergalactic medium is reionised by the UV radiation from the first generation of stars and galaxies. One tracer of the process is the 21 cm line of hydrogen that will be observed by the Square Kilometre Array (SKA) at low frequencies, thus imaging the distribution of ionised and neutral regions and their evolution. To prepare for these upcoming observations, we investigate a deep learning method to predict from 21 cm maps the reionisation time field (treion(r)), i.e. the time at which each location has been reionised. treion(r) encodes the propagation of ionisation fronts in a single field, gives access to times of local reionisation or to the extent of the radiative reach of early sources. Moreover it gives access to the time evolution of ionisation on the plane of sky, when such evolution is usually probed along the line-of-sight direction. We trained a convolutional neural network (CNN) using simulated 21 cm maps and reionisation times fields produced by the simulation code 21cmFAST . We also investigate the performance of the CNN when adding instrumental effects. Globally, we find that without instrumental effects the 21 cm maps can be used to reconstruct the associated reionisation times field in a satisfying manner: the quality of the reconstruction is dependent on the redshift at which the 21 cm observation is being made and in general it is found that small scale (<10cMpc/h) features are smoothed in the reconstructed field, while larger scale features are well recovered. When instrumental effects are included, the scale dependance of reconstruction is even further pronounced, with significant smoothing on small and intermediate scales.

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DUSTiER (DUST in the Epoch of Reionization): dusty galaxies in cosmological radiation-hydrodynamical simulations of the Epoch of Reionization with RAMSES-CUDATON

In recent years, interstellar dust has become a crucial topic in the study of the high and very high redshift Universe. Evidence points to the existence of high dust masses in massive star forming galaxies already during the Epoch of Reionization, potentially affecting the escape of ionising photons into the intergalactic medium. Moreover, correctly estimating dust extinction at UV wavelengths is essential for precise ultra-violet luminosity function (UVLF) prediction and interpretation. In this paper, we investigate the impact of dust on the observed properties of high redshift galaxies, and cosmic reionization. To this end, we couple a physical model for dust production to the fully coupled radiation-hydrodynamics cosmological simulation code RAMSES-CUDATON, and perform a $16^3$, $2048^3$, simulation, that we call DUSTiER for DUST in the Epoch of Reionization. It yields galaxies with dust masses and UV slopes compatible with constraints at z $\geq 5$. We find that extinction has a dramatic impact on the bright end of the UVLF, even as early as $\rm z=8$, and our dusty UVLFs are in better agreement with observations than dust-less UVLFs. The fraction of obscured star formation rises up to 45% at $\rm z=5$, in agreement with some of the latest results from ALMA. Finally, we find that dust reduces the escape of ionising photons from galaxies more massive than $10^{10} M_\odot$ (brighter than $\approx -18$ MAB1600) by >10%, and possibly up to 80-90% for our most massive galaxies. Nevertheless, we find that the ionising escape fraction is first and foremost set by neutral Hydrogen in galaxies, as the latter produces transmissions up to 100 times smaller than through dust alone.

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The detectability of strong 21 centimetre forest absorbers from the diffuse intergalactic medium in late reionisation models

A late end to reionisation at redshift $z\simeq 5.3$ is consistent with observed spatial variations in the Ly$\alpha$ forest transmission and the deficit of Ly$\alpha$ emitting galaxies around extended Ly$\alpha$ absorption troughs at $z=5.5$. In this model, large islands of neutral hydrogen should persist in the diffuse intergalactic medium (IGM) until $z\simeq 6$. We use a novel, hybrid approach that combines high resolution cosmological hydrodynamical simulations with radiative transfer to predict the incidence of strong 21 cm forest absorbers with optical depths $\tau_{21}>10^{-2}$ from the diffuse IGM in these late reionisation models. We include the effect of redshift space distortions on the simulated 21 cm forest spectra, and treat the highly uncertain heating of the pre-reionisation IGM by soft X-rays as a free parameter. For a model with only modest IGM pre-heating, such that average gas kinetic temperatures in the diffuse IGM remain below $T_{\rm K}\simeq 10^{2} \rm\, K$, we find that strong 21 cm forest absorption lines should persist until $z=6$. For a sample of $\sim 10$ sufficiently radio loud background sources, a null-detection of 21 cm forest absorbers at $z\simeq 6$ with SKA1-low or possibly LOFAR should provide an informative lower limit on the still largely unconstrained soft X-ray background at high redshift and the temperature of the pre-reionisation IGM.

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Lyman-alpha opacities at z=4-6 require low mass, radiatively-suppressed galaxies to drive cosmic reionization

The high redshift Lyman-alpha forest, in particular the Gunn-Peterson trough, is the most unambiguous signature of the neutral to ionized transition of the intergalactic medium (IGM) taking place during the Epoch of Reionization (EoR). Recent studies, e.g. Kulkarni et al. (2019a) and Keating et al. (2019), showed that reproducing the observed Lyman-alpha opacities after overlap required a non-monotonous evolution of cosmic emissivity: rising, peaking at z=6, and then decreasing onwards to z=4. Such an evolution is puzzling considering galaxy build-up and the cosmic star formation rate are still continously on the rise at these epochs. Here, we use new RAMSES-CUDATON simulations to show that such a peaked evolution may occur naturally in a fully coupled radiation-hydrodynamical framework. In our fiducial run, cosmic emissivity at z>6 is dominated by a low mass (M$_{\rm DM}<2.10^9$ M$_{\odot}$), high escape fraction halo population, driving reionization, up to overlap. Approaching z=6, this population is radiatively suppressed due to the rising ionizing UV background, and its emissivity drops. In the meantime, the high mass halo population builds up and its emissivity rises, but not fast enough to compensate the dimming of the low mass haloes, because of low escape fractions. The combined ionizing emissivity of these two populations therefore naturally results in a rise and fall of the cosmic emissivity, from z=12 to z=4, with a peak at z=6. An alternative run, which features higher escape fractions for the high mass haloes and later suppression at low mass, leads to overshooting the ionizing rate, over-ionizing the IGM and therefore too low Lyman-alpha opacities.

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Predicting Images for the Dynamics Of stellar Clusters ({\pi}-DOC): a deep learning framework to predict mass, distance and age of globular clusters

Dynamical mass estimates of simple systems such globular clusters (GCs) still suffer from up to a factor of 2 uncertainty. This is primarily due to the oversimplifications of standard dynamical models that often neglect the effects of the long-term evolution of GCs. Here, we introduce a new approach to measure the dynamical properties of GCs, based on the combination of a deep-learning framework and the large amount of data from direct $N$-body simulations. Our algorithm, $\texttt{$\pi$-DOC}$ ($\textit{Predicting Images for the Dynamics Of stellar Clusters}$) is composed of two convolutional networks, trained to learn the non-trivial transformation between an observed GC luminosity map and its associated mass distribution, age, and distance. The training set is made of V-band luminosity and mass maps constructed as mock observations from $N$-body simulations. The tests on $\texttt{$\pi$-DOC}$ demonstrate that we can predict the mass distribution with a mean error per pixel of 27%, and the age and distance with an accuracy of 1.5 Gyr and 6 kpc, respectively. In turn, we recover the shape of the mass-to-light profile and its global value with a mean error of 12%, which implies that we efficiently trace mass segregation. A preliminary comparison with observations indicates that our algorithm is able to predict the dynamical properties of GCs within the limits of the training set. These encouraging results demonstrate that our deep-learning framework and its forward modelling approach can offer a rapid and adaptable tool competitive with standard dynamical models.

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Implications of the $z>5$ Lyman-$\alpha$ forest for the 21-cm power spectrum from the epoch of reionization

Our understanding of the intergalactic medium at redshifts $z=5$-$6$ has improved considerably in the last few years due to the discovery of quasars with $z>6$ that enable Lyman-$\alpha$ forest studies at these redshifts. A realisation from this has been that hydrogen reionization could end much later than previously thought, so that large "islands" of cold, neutral hydrogen could exist in the IGM at redshifts $z=5$-$6$. By using radiative transfer simulations of the IGM, we consider the implications of the presence of these neutral hydrogen islands for the 21-cm power spectrum signal and its potential detection by experiments such as HERA, SKA, LOFAR, and MWA. In contrast with previous models of the 21-cm signal, we find that thanks to the late end of reionization the 21-cm power in our simulation continues to be as high as $\Delta^2_{21}=10~\mathrm{mK}^2$ at $k\sim 0.1~h/$cMpc at $z=5$-$6$. This value of the power spectrum is several orders of magnitude higher than that in the conventional models considered in the literature for these redshifts. Such high values of the 21-cm power spectrum should be detectable by HERA and SKA1-LOW in $\sim 1000$ hours, assuming optimistic foreground subtraction. This redshift range is also attractive due to relatively low sky temperature and potentially greater abundance of multiwavelength data.

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Constraining the second half of reionization with the Lyman-$β$ forest

We present an analysis of the evolution of the Lyman-series forest into the epoch of reionization using cosmological radiative transfer simulations in a scenario where reionization ends late. We explore models with different midpoints of reionization and gas temperatures. We find that once the simulations have been calibrated to match the mean flux of the observed Lyman-$α$ forest at $4 < z < 6$, they also naturally reproduce the distribution of effective optical depths of the Lyman-$β$ forest in this redshift range. We note that the tail of the largest optical depths that is most challenging to match corresponds to the long absorption trough of ULAS J0148+0600, which we have previously shown to be rare in our simulations. We consider the evolution of the Lyman-series forest out to higher redshifts, and show that future observations of the Lyman-$β$ forest at $z>6$ will discriminate between different reionization histories. The evolution of the Lyman-$α$ and Lyman-$γ$ forests are less promising as a tool for pushing studies of reionization to higher redshifts due to the stronger saturation and foreground contamination, respectively.

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Galactic ionising photon budget during the Epoch of Reionisation in the Cosmic Dawn II simulation

Cosmic Dawn ("CoDa") II yields the first statistically-meaningful determination of the relative contribution to reionization by galaxies of different halo mass, from a fully-coupled radiation-hydrodynamics simulation of the epoch of reionization large enough ($\sim$ 100 Mpc) to model global reionization while resolving the formation of all galactic halos above $\sim 10^8 M_\odot$. Cell transmission inside high-mass haloes is bi-modal -- ionized cells are transparent, while neutral cells absorb the photons their stars produce - and the halo escape fraction $f_{esc}$ reflects the balance of star formation rate ("SFR") between these modes. The latter is increasingly prevalent at higher halo mass, driving down $f_{esc}$ (we provide analytical fits to our results), whereas halo escape luminosity, proportional to $f_{esc} \times$SFR, increases with mass. Haloes with dark matter masses within $6.10^{8} M_\odot < M_h < 3.10^{10} M_\odot$ produce $\sim 80$% of the escaping photons at z=7, when the Universe is 50% ionized, making them the main drivers of cosmic reionization. Less massive haloes, though more numerous, have low SFRs and contribute less than 10% of the photon budget then, despite their high $f_{esc}$. High mass haloes are too few and too opaque, contributing $<10$% despite their high SFRs. The dominant mass range is lower (higher) at higher (lower) redshift, as mass function and reionization advance together (e.g. at z$=8.5$, x$_{\rm HI}=0.9$, $M_h < 5.10^9 M_\odot$ haloes contributed $\sim$80%). Galaxies with UV magnitudes $M_{AB1600}$ between $-12$ and $-19$ dominated reionization between z$=6$ and 8.

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Probing the thermal state of the intergalactic medium at $z>5$ with the transmission spikes in high-resolution Ly$α$ forest spectra

We compare a sample of five high-resolution, high S/N Ly$α$ forest spectra of bright $6 5$ with those obtained from mock absorption spectra from the Sherwood and Sherwood-Relics suites of hydrodynamical simulations of the intergalactic medium (IGM). We use a profile fitting procedure for the inverted transmitted flux, $1-F$, similar to the widely used Voigt profile fitting of the transmitted flux $F$ at lower redshifts, to characterise the transmission spikes that probe predominately underdense regions of the IGM. We are able to reproduce the width and height distributions of the transmission spikes, both with optically thin simulations of the post-reionization Universe using a homogeneous UV background and full radiative transfer simulations of a late reionization model. We find that the width of the fitted components of the simulated transmission spikes is very sensitive to the instantaneous temperature of the reionized IGM. The internal structures of the spikes are more prominant in low temeperature models of the IGM. The width distribution of the observed transmission spikes, which require high spectral resolution ($\leq $ 8 km/s) to be resolved, is reproduced for optically thin simulations with a temperature at mean density of $T_0= (11000 \pm 1600,10500\pm 2100,12000 \pm 2200)$ K at $z= (5.4,5.6,5.8)$. This is weakly dependent on the slope of the temperature-density relation, which is favoured to be moderately steeper than isothermal. In the inhomogeneous, late reionization, full radiative transfer simulations where islands of neutral hydrogen persist to $z\sim5.3$, the width distribution of the observed transmission spikes is consistent with the range of $T_0$ caused by spatial fluctuations in the temperature-density relation.

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Long troughs in the Lyman-$α$ forest below redshift 6 due to islands of neutral hydrogen

A long (110 cMpc/$h$) and deep absorption trough in the Ly$α$ forest has been observed extending down to redshift 5.5 in the spectrum of ULAS J0148+0600. Although no Ly$α$ transmission is detected, Ly$β$ spikes are present which has led to claims that the gas along this trough must be ionized. Using high resolution cosmological radiative transfer simulations in large volumes, we show that in a scenario where reionization ends late ($z \sim 5.2$), our simulations can reproduce troughs as long as observed. In this model, we find that the troughs are caused by islands of neutral hydrogen. Small ionized holes within the neutral islands allow for the transmission of Ly$β$. We have also modelled the Ly$α$ emitter population around the simulated troughs, and show that there is a deficit of Ly$α$ emitters close to the trough as is observed.

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A deep learning model to emulate simulations of cosmic reionization

We present a deep learning model trained to emulate the radiative transfer during the epoch of cosmological reionization. CRADLE (Cosmological Reionization And Deep LEarning) is an autoencoder convolutional neural network that uses two-dimensional maps of the star number density and the gas density field at z=6 as inputs and that predicts 3D maps of the times of reionization $\mathrm{t_{reion}}$ as outputs. These predicted single fields are sufficient to describe the global reionization history of the intergalactic medium in a given simulation. We trained the model on a given simulation and tested the predictions on another simulation with the same paramaters but with different initial conditions. The model is successful at predicting $\mathrm{t_{reion}}$ maps that are in good agreement with the test simulation. We used the power spectrum of the $\mathrm{t_{reion}}$ field as an indicator to validate our model. We show that the network predicts large scales almost perfectly but is somewhat less accurate at smaller scales. While the current model is already well-suited to get average estimates about the reionization history, we expect it can be further improved with larger samples for the training, better data pre-processing and finer tuning of hyper-parameters. Emulators of this kind could be systematically used to rapidly obtain the evolving HII regions associated with hydro-only simulations and could be seen as precursors of fully emulated physics solvers for future generations of simulations.

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Large Lyman-alpha opacity fluctuations and low CMB tau in models of late reionization with large islands of neutral hydrogen extending to z<5.5

High-redshift QSO spectra show large spatial fluctuations in the Ly-alpha opacity of the intergalactic medium on surprisingly large scales at z>~5.5. We present a radiative transfer simulation of cosmic reionization driven by galaxies that reproduces this large scatter and the rapid evolution of the Ly-alpha opacity distribution at 5 ~6. Reionization is complete at z=5.3 in our model, and 50% of the volume of the Universe is ionized at z=7. Agreement with the Ly-alpha forest data in such a late reionization model requires a rapid evolution of the ionizing emissivity of galaxies that peaks at z~6.8. The late end of reionization results in a large scatter in the photoionisation rate and the neutral hydrogen fraction at redshifts as low as z<~5.5 with large residual neutral 'islands' that can produce very long Gunn-Peterson troughs resembling those seen in the data.

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Impact of the reduced speed of light approximation on ionization front velocities in cosmological simulations of the epoch of reionization

Coupled radiative-hydrodynamics simulations of the epoch of reionization aim to reproduce the propagation of ionization fronts during the transition before the overlap of HII regions. Many of these simulations use moment-based methods to track radiative transfer processes using explicit solvers and are therefore subject to strict stability conditions regarding the speed of light, which implies a great computational cost. It can be reduced by assuming a reduced speed of light, and this approximation is now widely used to produce large-scale simulations of reionization. We introduce a new method for estimating and comparing the ionization front speeds based on maps of the reionization redshifts. We applied it to a set of cosmological simulations of the reionization using a set of reduced speeds of light, and measured the evolution of the ionization front speeds during the reionization process. We find that ionization fronts progress via a two-stage process, the first stage at low velocity as the fronts emerge from high density regions and a second later stage just before the overlap, during which front speeds increase close to the speed of light. Using a set of small 8Mpc/h^3 simulations, we find that a minimal velocity of 0.3c is able to model these two stages in this specific context without significant impact. Values as low as 0.05c can model the first low velocity stage, but limit the acceleration at later times. Lower values modify the distribution of front speeds at all times. Using larger 64Mpc/h^3 volumes that better account for distant sources, we find that reduced speed of light has a greater impact on reionization times and front speeds in underdense regions that are reionized at late times. The same quantities measured in dense regions with slow fronts are less sensitive to c values.

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Calibrating cosmological radiative transfer simulations with Lyman alpha forest data: Evidence for large spatial UV background fluctuations at z ~ 5.6 - 5.8 due to rare bright sources

We calibrate here cosmological radiative transfer simulation with ATON/RAMSES with a range of measurements of the Lyman alpha opacity from QSO absorption spectra. We find the Lyman alpha opacity to be very sensitive to the exact timing of hydrogen reionisation. Models reproducing the measured evolution of the mean photoionisation rate and average mean free path reach overlap at z ~ 7 and predict an accelerated evolution of the Lyman alpha opacity at z > 6 consistent with the rapidly evolving luminosity function of Lyman alpha emitters in this redshift range. Similar to "optically thin" simulations our full radiative transfer simulations fail, however, to reproduce the high-opacity tail of the Lyman alpha opacity PDF at z > 5. We argue that this is due to spatial UV fluctuations in the post-overlap phase of reionisation on substantially larger scales than predicted by our source model, where the ionising emissivity is dominated by large numbers of sub-L* galaxies. We further argue that this suggests a significant contribution to the ionising UV background by much rarer bright sources at high redshift.

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A tale of seven narrow spikes and a long trough: constraining the timing of the percolation of HII bubbles at the tail-end of reionization with ULAS J1120+0641

High-signal to noise observations of the Ly$α$ forest transmissivity in the z = 7.085 QSO ULAS J1120+0641 show seven narrow transmission spikes followed by a long 240 cMpc/h trough. Here we use radiative transfer simulations of cosmic reionization previously calibrated to match a wider range of Ly$α$ forest data to show that the occurrence of seven transmission spikes in the narrow redshift range z = 5.85 - 6.1 is very sensitive to the exact timing of reionization. Occurrence of the spikes requires the most under dense regions of the IGM to be already fully ionised. The rapid onset of a long trough at z = 6.12 requires a strong decrease of the photo-ionisation rate at z$\sim$6.1 in this line-of-sight, consistent with the end of percolation at this redshift. The narrow range of reionisation histories that we previously found to be consistent with a wider range of Ly$α$ forest data have a reasonable probability of showing seven spikes and the mock absorption spectra provide an excellent match to the spikes and the trough in the observed spectrum of ULAS J1120+0641. Despite the large overall opacity of Ly$α$ at z > 5.8, larger samples of high signal-to-noise observations of rare transmission spikes should therefore provide important further insights into the exact timing of the percolation of HII bubbles at the tail-end of reionization

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Self-shielding of hydrogen in the IGM during the epoch of reionization

We investigate self-shielding of intergalactic hydrogen against ionizing radiation in radiative transfer simulations of cosmic reionization carefully calibrated with Lyman alpha forest data. While self-shielded regions manifest as Lyman-limit systems in the post-reionization Universe, here we focus on their evolution during reionization (redshifts z=6-10). At these redshifts, the spatial distribution of hydrogen-ionizing radiation is highly inhomogeneous, and some regions of the Universe are still neutral. After masking the neutral regions and ionizing sources in the simulation, we find that the hydrogen photoionization rate depends on the local hydrogen density in a manner very similar to that in the post-reionization Universe. The characteristic physical hydrogen density above which self-shielding becomes important at these redshifts is about $\mathrm{n_H \sim 3 \times 10^{-3} cm^{-3}}$, or $\sim$ 20 times the mean hydrogen density, reflecting the fact that during reionization photoionization rates are typically low enough that the filaments in the cosmic web are often self-shielded. The value of the typical self-shielding density decreases by a factor of 3 between redshifts z=3 and 10, and follows the evolution of the average photoionization rate in ionized regions in a simple fashion. We provide a simple parameterization of the photoionization rate as a function of density in self-shielded regions during the epoch of reionization.

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Large scale opacity fluctuations in the Lyman alpha forest: evidence for QSOs dominating the ionising UV background at z ~ 5.5-6 ?

Lyman-alpha forest data probing the post-reionization Universe shows surprisingly large opacity fluctuations over rather large ($\ge$50 comoving Mpc/h) spatial scales. We model these fluctuations using a hybrid approach utilizing the large volume Millennium simulation to predict the spatial distribution of QSOs combined with smaller scale full hydrodynamical simulation performed with RAMSES and post-processed with the radiative transfer code ATON. We produce realictic mock absorption spectra that account for the contribution of galaxies and QSOs to the ionising UV background. This improved models confirm our earlier findings that a significant ($\ge$50%) contribution of ionising photons from QSOs can explain the large reported opacity fluctuations on large scales. The inferred QSO luminosity function is thereby consistent with recent estimates of the space density of QSOs at this redshift. Our simulations still somewhat struggle, however, to reproduce the very long (110 comoving Mpc/h) high opacity absorption through observed in ULAS J0148+0600, perhaps suggesting an even later end of reionization than assumed in our previously favoured model. Medium-deep/medium area QSO surveys as well as targeted searches for the predicted strong transverse QSO proximity effect whould illuminate the origin of the observed large scale opacity fluctuations. They would allow to substantiate whether UV fluctuations due to QSO are indeed primarily responsible, or whether significant contributions from other recently proposed mechansims such as large scale fluctuations in temperature and mean free path (even in the absence of rare bright sources) are required.

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Local reionizations histories with merger tree of HII regions

We constrain the initial stage of the reionization process around progenitors of galaxies, such as the extent of the initial HII region before its fusion with the UV background and the duration of its propagation. We use a set of reionisation simulations with different resolutions and ionizing source recipes. A catalog of the HII regions properties is built thanks to a merger tree of HII regions. We draw local reionization histories as a function of time and investigate variations according to the halo mass progenitors of the regions. We then extrapolate the halo mass inside the region from high z to z=0 to make predictions about the reionization histories of z=0 galaxies. We found that the later an HII region appears, the smaller will be its related lifetime and volume before it sees the global UV background. Quantitatively the duration and the extent of the initial growth of an HII region is strongly dependent on the mass of the inner halo and can be as long as 50 % of the reionization epoch. We found that the most massive is a halo today, the earlier it appears and the larger are the extension and the duration of propagation of its HII region. Quantitative predictions differ depending on the box size or the source model: small simulated volumes are affected by proximity effects between HII regions and halo-based source models predict smaller regions and slower I-front expansion than in models using star particles as ionizing sources. Our results suggests that Milky Way-type halos have a maximal extent of 1.1 Mpc/h for the initial HII region that established itself in 150-200$\pm 20$ Myrs. This is consistent with prediction made using constrained Local Group simulation. Considering halos with masses comparable to those of the Local Group (MW+M31), our result suggests that statistically it has not been influenced by an external front coming from a Virgo-like cluster.

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