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Jonathan Martinez

Publications and source records attributed to Jonathan Martinez.

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Personalizing Cancer Models under Data Scarcity via Parameter Decomposition

Personalized cancer modeling for clinical applications requires robust and efficient parameter calibration, particularly in settings with limited patient data. This need is especially critical for medical digital twins (MDTs), which are virtual representations of disease continuously updated using longitudinal patient measurements. In this work, we propose a novel parameter personalization framework for dynamical cancer models under data scarcity. Our approach decomposes selected model parameters into a common component, shared across patients, and a personalized component, which is patient-specific and can be updated as new data become available. The common component captures population-level structure and is estimated once, providing an informed prior that enables rapid and accurate personalization. We demonstrate the effectiveness of this framework using synthetic data generated from canonical dynamical systems, such as logistic growth models with optimized treatment interventions. Our results show that parameter decomposition significantly improves calibration performance in limited-data regimes, facilitating fast and reliable personalization and supporting the development of patient-specific cancer models and MDTs.

q-bio.OT

Constructing directed networks with a desired minimum balanced coloring

This work introduces a systematic algorithm for generating directed networks with prescribed symmetries by constructing expansions from a given quotient network. The method enables researchers to synthesize realistic network models with controllable symmetry structure, facilitating studies of symmetry-driven dynamics such as cluster synchronization in biological, social, and technological systems.

physics.soc-ph

Parameter Identifiability of Linear-Compartmental Mammillary Models

Linear compartmental models are a widely used tool for analyzing systems arising in biology, medicine, and more. In such settings, it is essential to know whether model parameters can be recovered from experimental data. This is the identifiability problem. For a class of linear compartmental models with one input and one output, namely, those for which the underlying graph is a bidirected tree, Bortner et al. completely characterized which such models are structurally identifiability, which means that every parameter is generically locally identifiable. Here, we delve deeper, by examining which individual parameters are locally versus globally identifiable. Specifically, we analyze mammillary models, which consist of one central compartment which is connected to all other (peripheral) compartments. For these models, which fall into five infinite families, we determine which individual parameters are locally versus globally identifiable, and we give formulas for some of the globally identifiable parameters in terms of the coefficients of input-output equations. Our proofs rely on a combinatorial formula due to Bortner et al. for these coefficients.

math.CO

Boosted-SpringDTW for Comprehensive Feature Extraction of Physiological Signals

Goal: To achieve-high quality comprehensive feature extraction from physiological signals that enables precise physiological parameter estimation despite evolving waveform morphologies. Methods: We propose Boosted-SpringDTW, a probabilistic framework that leverages dynamic time warping (DTW) and minimal domain-specific heuristics to simultaneously segment physiological signals and identify fiducial points that represent cardiac events. An automated dynamic template adapts to evolving waveform morphologies. We validate Boosted-SpringDTW performance with a benchmark PPG dataset whose morphologies include subject- and respiratory-induced variation. Results: Boosted-SpringDTW achieves precision, recall, and F1-scores over 0.96 for identifying fiducial points and mean absolute error values less than 11.41 milliseconds when estimating IBI. Conclusion: Boosted-SpringDTW improves F1-Scores compared to two baseline feature extraction algorithms by 35 percent on average for fiducial point identification and mean percent difference by 16 percent on average for IBI estimation. Significance: Precise hemodynamic parameter estimation with wearable devices enables continuous health monitoring throughout a patients' daily life.

eess.SP

Personalization in Human-AI Teams: Improving the Compatibility-Accuracy Tradeoff

AI systems that model and interact with users can update their models over time to reflect new information and changes in the environment. Although these updates may improve the overall performance of the AI system, they may actually hurt the performance with respect to individual users. Prior work has studied the trade-off between improving the system's accuracy following an update and the compatibility of the updated system with prior user experience. The more the model is forced to be compatible with a prior version, the higher loss in accuracy it will incur. In this paper, we show that by personalizing the loss function to specific users, in some cases it is possible to improve the compatibility-accuracy trade-off with respect to these users (increase the compatibility of the model while sacrificing less accuracy). We present experimental results indicating that this approach provides moderate improvements on average (around 20%) but large improvements for certain users (up to 300%).

cs.LG