arXiv subjects

Jonathan Pritchard

Publications and source records attributed to Jonathan Pritchard.

At least 19 recordsLinked to original sources

arXiv2026

Overview of 21cm Experiments at high redshift with SKAO

We provide an overview of the eight SKAO Science Book chapters that motivate the Epoch of Reionisation and Cosmic Dawn experiments with SKA-Low. We describe the individual SKA-Low experiments and expected sensitivity - power spectrum, tomography, 21-cm forest, cross-correlations, building on the broad observational plan laid out in the 2015 SKA Science Book. Finally, we outline features of the telescope that will be critical for the success of EoR/CD science, e.g., beam apodization, substations, and multi-beaming.

astro-ph.CO↗

arXiv2026

Circuit Modeling for In Situ 21 cm Radiometer Calibration

Recent experiments in cosmology, particularly those aimed at detecting the faint, redshifted, global 21 cm hydrogen line (depth < ~200 mK, z > 7.5), have imposed stringent new requirements on radiometer calibration. In this work, we present a framework for circuit modeling and parameter inference to strengthen these calibration pipelines. This new approach enables in situ characterization of otherwise immeasurable systematics using physically motivated models. A combination of frequentist and Bayesian techniques are employed in a pipeline that supports iterative modeling, robust parameter estimation, and detailed uncertainty quantification. The framework is applied to the REACH telescope, where the precise correction of variations in the radio signal paths arising from component aging or environmental effects is critical. Circuit models of REACH's calibration sources are developed, with the goal of predicting source temperature corrections that are conventionally obtained from laboratory measurements. By fitting the models to measured data using a convolutional cost function, a strong agreement with RMS residuals no worse than -37 dB is obtained. However, Bayesian inference reveals that the resulting temperature corrections can have uncertainties on the order of 1 to 2 K, caused by reflection coefficient degeneracies, measurement noise, and errors in the models. To combat this, posteriors obtained from laboratory measurements are employed as updated priors, reducing correction uncertainties down to 75 mK. Ultimately, the framework provides a means of dynamically accounting for drift in system non-idealities over time, addressing the increasing precision demands of global 21 cm radio astronomy.

astro-ph.IM↗

arXiv2025

A Review and Collection of Metrics and Benchmarks for Quantum Computers: definitions, methodologies and software

Quantum computers have the potential to provide an advantage over classical computers in a number of areas. Numerous metrics to benchmark the performance of quantum computers, ranging from their individual hardware components to entire applications, have been proposed over the years. Navigating the resulting extensive literature can be overwhelming. Objective comparisons are further hampered in practice as different variations of the same metric are used, and the data disclosed together with a reported metric value is often not sufficient to reproduce the measurements. This article addresses these challenges by providing a review of metrics and benchmarks for quantum computers and 1) a comprehensive collection of benchmarks allowing holistic comparisons of quantum computers, 2) a consistent format of the definitions across all metrics including a transparent description of the methodology and of the main assumptions and limitations, and 3) a reproducible approach by linking the metrics to open-source software used to evaluate them. We identify five areas where international standardization working groups could be established, namely: i) the identification and agreement on the categories of metrics that comprehensively benchmark device performance; ii) the identification and agreement on a set of well-established metrics that together comprehensively benchmark performance; iii) the identification of metrics specific to hardware platforms, including non-gate-based quantum computers; iv) inter-laboratory comparison studies to develop best practice guides for measurement methodology; and v) agreement on what data and software should be reported together with a metric value to ensure trust, transparency and reproducibility. We provide potential routes to advancing these areas. We expect this compendium to accelerate the progress of quantum computing hardware towards quantum advantage.

quant-ph↗

arXiv2024

Reproducibility of machine learning analyses of 21 cm reionization maps

Machine learning (ML) methods have become popular for parameter inference in cosmology, although their reliance on specific training data can cause difficulties when applied across different data sets. By reproducing and testing networks previously used in the field, and applied to 21cmFast and Simfast21 simulations, we show that convolutional neural networks (CNNs) often learn to identify features of individual simulation boxes rather than the underlying physics, limiting their applicability to real observations. We examine the prediction of the neutral fraction and astrophysical parameters from 21 cm maps and find that networks typically fail to generalise to unseen simulations. We explore a number of case studies to highlight factors that improve or degrade network performance. These results emphasise the responsibility on users to ensure ML models are applied correctly in 21 cm cosmology.

astro-ph.CO↗

arXiv2024

Toward the Identifiability of Comparative Deep Generative Models

Deep Generative Models (DGMs) are versatile tools for learning data representations while adequately incorporating domain knowledge such as the specification of conditional probability distributions. Recently proposed DGMs tackle the important task of comparing data sets from different sources. One such example is the setting of contrastive analysis that focuses on describing patterns that are enriched in a target data set compared to a background data set. The practical deployment of those models often assumes that DGMs naturally infer interpretable and modular latent representations, which is known to be an issue in practice. Consequently, existing methods often rely on ad-hoc regularization schemes, although without any theoretical grounding. Here, we propose a theory of identifiability for comparative DGMs by extending recent advances in the field of non-linear independent component analysis. We show that, while these models lack identifiability across a general class of mixing functions, they surprisingly become identifiable when the mixing function is piece-wise affine (e.g., parameterized by a ReLU neural network). We also investigate the impact of model misspecification, and empirically show that previously proposed regularization techniques for fitting comparative DGMs help with identifiability when the number of latent variables is not known in advance. Finally, we introduce a novel methodology for fitting comparative DGMs that improves the treatment of multiple data sources via multi-objective optimization and that helps adjust the hyperparameter for the regularization in an interpretable manner, using constrained optimization. We empirically validate our theory and new methodology using simulated data as well as a recent data set of genetic perturbations in cells profiled via single-cell RNA sequencing.

cs.LG↗

arXiv2019

Peering into the Dark (Ages) with Low-Frequency Space Interferometers

Neutral hydrogen pervades the infant Universe, and its redshifted 21-cm signal allows one to chart the Universe. This signal allows one to probe astrophysical processes such as the formation of the first stars, galaxies, (super)massive black holes and enrichment of the pristine gas from z~6 to z~30, as well as fundamental physics related to gravity, dark matter, dark energy and particle physics at redshifts beyond that. As one enters the Dark Ages (z>30), the Universe becomes pristine. Ground-based low-frequency radio telescopes aim to detect the spatial fluctuations of the 21-cm signal. Complementary, global 21-cm experiments aim to measure the sky-averaged 21-cm signal. Escaping RFI and the ionosphere has motivated space-based missions, such as the Dutch-Chinese NCLE instrument (currently in lunar L2), the proposed US-driven lunar or space-based instruments DAPPER and FARSIDE, the lunar-orbit interferometer DSL (China), and PRATUSH (India). To push beyond the current z~25 frontier, though, and measure both the global and spatial fluctuations (power-spectra/tomography) of the 21-cm signal, low-frequency (1-100MHz; BW~50MHz; z>13) space-based interferometers with vast scalable collecting areas (1-10-100 km2), large filling factors (~1) and large fields-of-view (4pi sr.) are needed over a mission lifetime of >5 years. In this ESA White Paper, we argue for the development of new technologies enabling interferometers to be deployed, in space (e.g. Earth-Sun L2) or in the lunar vicinity (e.g. surface, orbit or Earth-Moon L2), to target this 21-cm signal. This places them in a stable environment beyond the reach of most RFI from Earth and its ionospheric corruptions, enabling them to probe the Dark Ages as well as the Cosmic Dawn, and allowing one to investigate new (astro)physics that is inaccessible in any other way in the coming decades. [Abridged]

astro-ph.IM↗

arXiv2019

Astro2020 Science White Paper: First Stars and Black Holes at Cosmic Dawn with Redshifted 21-cm Observations

The "cosmic dawn" refers to the period of the Universe's history when stars and black holes first formed and began heating and ionizing hydrogen in the intergalactic medium (IGM). Though exceedingly difficult to detect directly, the first stars and black holes can be constrained indirectly through measurements of the cosmic 21-cm background, which traces the ionization state and temperature of intergalactic hydrogen gas. In this white paper, we focus on the science case for such observations, in particular those targeting redshifts z $\gtrsim$ 10 when the IGM is expected to be mostly neutral. 21-cm observations provide a unique window into this epoch and are thus critical to advancing first star and black hole science in the next decade.

astro-ph.CO↗

arXiv2019

Cosmology with the Highly Redshifted 21cm Line

In addition to being a probe of Cosmic Dawn and Epoch of Reionization astrophysics, the 21cm line at $z>6$ is also a powerful way to constrain cosmology. Its power derives from several unique capabilities. First, the 21cm line is sensitive to energy injections into the intergalactic medium at high redshifts. It also increases the number of measurable modes compared to existing cosmological probes by orders of magnitude. Many of these modes are on smaller scales than are accessible via the CMB, and moreover have the advantage of being firmly in the linear regime (making them easy to model theoretically). Finally, the 21cm line provides access to redshifts prior to the formation of luminous objects. Together, these features of 21cm cosmology at $z>6$ provide multiple pathways toward precise cosmological constraints. These include the "marginalizing out" of astrophysical effects, the utilization of redshift space distortions, the breaking of CMB degeneracies, the identification of signatures of relative velocities between baryons and dark matter, and the discovery of unexpected signs of physics beyond the $Λ$CDM paradigm at high redshifts.

astro-ph.CO↗

arXiv2017

A Space-Based Observational Strategy for Characterizing the First Stars and Galaxies Using the Redshifted 21-cm Global Spectrum

The redshifted 21-cm monopole is expected to be a powerful probe of the epoch of the first stars and galaxies ($10<z<35$). The global 21-cm signal is sensitive to the thermal and ionization state of hydrogen gas and thus provides a tracer of sources of energetic photons -- primarily hot stars and accreting black holes -- which ionize and heat the high redshift intergalactic medium (IGM). This paper presents a strategy for observations of the global spectrum with a realizable instrument placed in a low altitude lunar orbit, performing night-time 40-120 MHz spectral observations, while on the farside to avoid terrestrial radio frequency interference, ionospheric corruption, and solar radio emissions. The frequency structure, uniformity over large scales, and unpolarized state of the redshifted 21-cm spectrum are distinct from the spectrally featureless, spatially-varying, and polarized emission from the bright foregrounds. This allows a clean separation between the primordial signal and foregrounds. For signal extraction, we model the foreground, instrument, and 21-cm spectrum with eigenmodes calculated via Singular Value Decomposition analyses. Using a Markov Chain Monte Carlo algorithm to explore the parameter space defined by the coefficients associated with these modes, we illustrate how the spectrum can be measured and how astrophysical parameters (e.g., IGM properties, first star characteristics) can be constrained in the presence of foregrounds using the Dark Ages Radio Explorer (DARE).

astro-ph.IM↗

arXiv2015

Synergy of CO/[CII]/Ly$α$ Line Intensity Mapping with the SKA

We present the science enabled by cross-correlations of the SKA1-LOW 21-cm EoR surveys with other line mapping programs. In particular, we identify and investigate potential synergies with planned programs, such as the line intensity mapping of redshifted CO rotational lines, [CII] and Ly-$α$ emissions during reionization. We briefly describe how these tracers of the star-formation rate at $z \sim 8$ can be modeled jointly before forecasting their auto- and cross-power spectra measurements with the nominal 21cm EoR survey. The use of multiple line tracers would be invaluable to validate and enrich our understanding of the EoR.

astro-ph.CO↗

arXiv2015

Cosmology from the EoR/Cosmic Dawn with the SKA

The SKA will build upon early detections of the EoR by precursor instruments, such as MWA, PAPER, and LOFAR, and planned instruments, such as HERA, to make the first high signal-to-noise measurements of fluctuations in the 21 cm brightness temperature from both reionization and the cosmic dawn. This will allow both imaging and statistical maps of the 21cm signal at redshifts z = 6 - 27 and constrain the underlying cosmology and evolution of the density field. This era includes nearly 60% of the (in principle) observable volume of the Universe and many more linear modes than the CMB, presenting an opportunity for SKA to usher in a new level of precision cosmology. This optimistic picture is complicated by the need to understand and remove the effect of astrophysics, so that systematics rather than statistics will limit constraints. This chapter describes the cosmological, as opposed to astrophysical, information available to SKA. Key areas for discussion include: cosmological parameters constraints using 21cm fluctuations as a tracer of the density field; lensing of the 21cm signal, constraints on heating via exotic physics such as decaying or annihilating dark matter; impact of fundamental physics such as non-Gaussianity or warm dark matter on the source population; and constraints on the bulk flows arising from the decoupling of baryons and photons at z = 1000. The chapter explores the path to separating cosmology from astrophysics, for example via velocity space distortions and separation in redshift. We discuss new opportunities for extracting cosmology made possible by the sensitivity of SKA Phase 1 and explores the advances achievable with SKA2.

astro-ph.CO↗

arXiv2015

All-sky signals from recombination to reionization with the SKA

Cosmic evolution in the hydrogen content of the Universe through recombination and up to the end of reionization is expected to be revealed as subtle spectral features in the uniform extragalactic cosmic radio background. The redshift evolution in the excitation temperature of the 21-cm spin flip transition of neutral hydrogen appears as redshifted emission and absorption against the cosmic microwave background. The precise signature of the spectral trace from cosmic dawn and the epoch of reionization are dependent on the spectral radiance, abundance and distribution of the first bound systems of stars and early galaxies, which govern the evolution in the spin-flip level populations. Redshifted 21 cm from these epochs when the spin temperature deviates from the temperature of the ambient relic cosmic microwave background results in an all-sky spectral structure in the 40-200 MHz range, almost wholly within the band of SKA-Low. Another spectral structure from gas evolution is redshifted recombination lines from epoch of recombination of hydrogen and helium; the weak all-sky spectral structure arising from this event is best detected at the upper end of the 350-3050 MHz band of SKA-mid. Total power spectra of SKA interferometer elements form the measurement set for these faint signals from recombination and reionization; the inter-element interferometer visibilities form a calibration set. The challenge is in precision polarimetric calibration of the element spectral response and solving for additives and unwanted confusing leakages of sky angular structure modes into spectral modes. Herein we discuss observing methods and design requirements that make possible these all-sky SKA measurements of the cosmic evolution of hydrogen.

astro-ph.IM↗

arXiv2015

Constraining the Astrophysics of the Cosmic Dawn and the Epoch of Reionization with the SKA

The Square Kilometre Array (SKA) will offer an unprecedented view onto the early Universe, using interferometric observations of the redshifted 21cm line. The 21cm line probes the thermal and ionization state of the cosmic gas, which is governed by the birth and evolution of the first structures in our Universe. Here we show how the evolution of the 21cm signal will allow us to study when the first generations of galaxies appeared, what were their properties, and what was the structure of the intergalactic medium. We highlight qualitative trends which will offer robust insights into the early Universe.

astro-ph.CO↗

arXiv2014

Asking gender questions: Results from a survey of gender and question asking among UK Astronomers at NAM2014

We report on a survey of astronomers asking questions at the most recent National Astronomy Meeting (NAM2014). The gender balance of both speakers and session chairs at NAM (31% and 29% women respectively) closely matched that of attendees (28% female). However, we find that women were under-represented among question askers (just 18% female). Women were especially under-represented in asking the first question (only 14% of first questions asked by women), but when the Q&A session reached four or more questions, women and men were observed to ask roughly equal numbers of questions. We found a small, but statistically insignificant, increase in the fraction of questions from women in sessions where the chair was also female. On average $2.2\pm0.1$ questions were asked per talk, with no detectable difference in the number of questions asked of female and male speakers, but on average female chairs solicited slightly fewer questions than male chairs. We compare these results to a similar study by Davenport et al. (2014) for the AAS, who also found under-representation of women amongst question askers, but saw more pronounced gender effects when a session chair or speaker were female. We conclude with suggestions for improving the balance of questions at future astronomy meetings.

astro-ph.IM↗

arXiv2012

A statistical framework for joint eQTL analysis in multiple tissues

Mapping expression Quantitative Trait Loci (eQTLs) represents a powerful and widely-adopted approach to identifying putative regulatory variants and linking them to specific genes. Up to now eQTL studies have been conducted in a relatively narrow range of tissues or cell types. However, understanding the biology of organismal phenotypes will involve understanding regulation in multiple tissues, and ongoing studies are collecting eQTL data in dozens of cell types. Here we present a statistical framework for powerfully detecting eQTLs in multiple tissues or cell types (or, more generally, multiple subgroups). The framework explicitly models the potential for each eQTL to be active in some tissues and inactive in others. By modeling the sharing of active eQTLs among tissues this framework increases power to detect eQTLs that are present in more than one tissue compared with "tissue-by-tissue" analyses that examine each tissue separately. Conversely, by modeling the inactivity of eQTLs in some tissues, the framework allows the proportion of eQTLs shared across different tissues to be formally estimated as parameters of a model, addressing the difficulties of accounting for incomplete power when comparing overlaps of eQTLs identified by tissue-by-tissue analyses. Applying our framework to re-analyze data from transformed B cells, T cells and fibroblasts we find that it substantially increases power compared with tissue-by-tissue analysis, identifying 63% more genes with eQTLs (at FDR=0.05). Further the results suggest that, in contrast to previous analyses of the same data, the majority of eQTLs detectable in these data are shared among all three tissues.

q-bio.QM↗

arXiv2011

Inflation and the Scale Dependent Spectral Index: Prospects and Strategies

We consider the running of the spectral index as a probe of both inflation itself, and of the overall evolution of the very early universe. Surveying a collection of simple single field inflationary models, we confirm that the magnitude of the running is relatively consistent, unlike the tensor amplitude, which varies by orders of magnitude. Given this target, we confirm that the running is potentially detectable by future large scale structure or 21 cm observations, but that only the most futuristic measurements can distinguish between these models on the basis of their running. For any specified inflationary scenario, the combination of the running index and unknown post-inflationary expansion history induces a theoretical uncertainty in the predicted value of the spectral index. This effect can easily dominate the statistical uncertainty with which Planck and its successors are expected to measure the spectral index. More positively, upcoming cosmological experiments thus provide an intriguing probe of physics between TeV and GUT scales by constraining the reheating history associated with any specified inflationary model, opening a window into the "primordial dark age" that follows the end of inflation.

astro-ph.CO↗

arXiv2009

Cosmology from the Highly-Redshifted 21 cm Line

One of the next decade's most exciting prospects is to explore the cosmic "dark ages," during which the first stars in the Universe formed, with the 21 cm line of neutral hydrogen. At z>6, this light redshifts into the low-frequency radio regime and can be observed with new generations of wide-field arrays. These experiments have the potential to observe enormous volumes and to improve both cosmological and astrophysical constraints dramatically. In this white paper, we describe how the next decade will see the first steps toward unlocking this potential, allowing us to answer two key questions about the fundamental physics of our Universe and the intergalactic medium: Does the standard cosmological model describe the Universe during the "dark ages?" How did the intergalactic medium evolve during this important time, ending with the reionization of hydrogen?

astro-ph.CO↗

arXiv2009

Astrophysics from the Highly-Redshifted 21 cm Line

The cosmic dark ages and the epoch of reionization, during which the first generations of stars and galaxies formed, are among the most compelling frontiers of extragalactic astrophysics and cosmology. Here we describe an exciting new probe of these eras: the 21 cm line of neutral hydrogen, which will allow us to map the neutral intergalactic medium throughout the era of first galaxy formation. In this white paper, we describe how these studies can answer two key questions about galaxy formation: What were the properties of high-redshift galaxies? How did they affect the Universe around them?

astro-ph.CO↗