arXiv subjects

Jonathan Will

Publications and source records attributed to Jonathan Will.

At least 19 recordsLinked to original sources

arXiv2025

Flora: Efficient Cloud Resource Selection for Big Data Processing via Job Classification

Distributed dataflow systems like Spark and Flink enable data-parallel processing of large datasets on clusters of cloud resources. Yet, selecting appropriate computational resources for dataflow jobs is often challenging. For efficient execution, individual resource allocations, such as memory and CPU cores, must meet the specific resource demands of the job. Meanwhile, the choices of cloud configurations are often plentiful, especially in public clouds, and the current cost of the available resource options can fluctuate. Addressing this challenge, we present Flora, a low-overhead approach to cost-optimizing cloud cluster configurations for big data processing. Flora lets users categorize jobs according to their data access patterns and derives suitable cluster resource configurations from executions of test jobs of the same category, considering current resource costs. In our evaluation on a new dataset comprising 180 Spark job executions on Google Cloud, Flora's cluster resource selections exhibit an average deviation below 6% from the most cost-optimal solution, with a maximum deviation below 24%.

cs.DC↗

arXiv2025

Experimentally Evaluating the Resource Efficiency of Big Data Autoscaling

Distributed dataflow systems like Spark and Flink enable data-parallel processing of large datasets on clusters. Yet, selecting appropriate computational resources for dataflow jobs is often challenging. For efficient execution, individual resource allocations, such as memory and CPU cores, must meet the specific resource requirements of the job. An alternative to selecting a static resource allocation for a job execution is autoscaling as implemented for example by Spark. In this paper, we evaluate the resource efficiency of autoscaling batch data processing jobs based on resource demand both conceptually and experimentally by analyzing a new dataset of Spark job executions on Google Dataproc Serverless. In our experimental evaluation, we show that there is no significant resource efficiency gain over static resource allocations. We found that the inherent conceptual limitations of such autoscaling approaches are the inelasticity of node size as well as the inelasticity of the ratio of memory to CPU cores.

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arXiv2024

Sizey: Memory-Efficient Execution of Scientific Workflow Tasks

As the amount of available data continues to grow in fields as diverse as bioinformatics, physics, and remote sensing, the importance of scientific workflows in the design and implementation of reproducible data analysis pipelines increases. When developing workflows, resource requirements must be defined for each type of task in the workflow. Typically, task types vary widely in their computational demands because they are simply wrappers for arbitrary black-box analysis tools. Furthermore, the resource consumption for the same task type can vary considerably as well due to different inputs. Since underestimating memory resources leads to bottlenecks and task failures, workflow developers tend to overestimate memory resources. However, overprovisioning of memory wastes resources and limits cluster throughput. Addressing this problem, we propose Sizey, a novel online memory prediction method for workflow tasks. During workflow execution, Sizey simultaneously trains multiple machine learning models and then dynamically selects the best model for each workflow task. To evaluate the quality of the model, we introduce a novel resource allocation quality (RAQ) score based on memory prediction accuracy and efficiency. Sizey's prediction models are retrained and re-evaluated online during workflow execution, continuously incorporating metrics from completed tasks. Our evaluation with a prototype implementation of Sizey uses metrics from six real-world scientific workflows from the popular nf-core framework and shows a median reduction in memory waste over time of 24.68% compared to the respective best-performing state-of-the-art baseline.

cs.DC↗

arXiv2024

Privacy-Preserving Sharing of Data Analytics Runtime Metrics for Performance Modeling

Performance modeling for large-scale data analytics workloads can improve the efficiency of cluster resource allocations and job scheduling. However, the performance of these workloads is influenced by numerous factors, such as job inputs and the assigned cluster resources. As a result, performance models require significant amounts of training data. This data can be obtained by exchanging runtime metrics between collaborating organizations. Yet, not all organizations may be inclined to publicly disclose such metadata. We present a privacy-preserving approach for sharing runtime metrics based on differential privacy and data synthesis. Our evaluation on performance data from 736 Spark job executions indicates that fully anonymized training data largely maintains performance prediction accuracy, particularly when there is minimal original data available. With 30 or fewer available original data samples, the use of synthetic training data resulted only in a one percent reduction in performance model accuracy on average.

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arXiv2023

Towards a Peer-to-Peer Data Distribution Layer for Efficient and Collaborative Resource Optimization of Distributed Dataflow Applications

Performance modeling can help to improve the resource efficiency of clusters and distributed dataflow applications, yet the available modeling data is often limited. Collaborative approaches to performance modeling, characterized by the sharing of performance data or models, have been shown to improve resource efficiency, but there has been little focus on actual data sharing strategies and implementation in production environments. This missing building block holds back the realization of proposed collaborative solutions. In this paper, we envision, design, and evaluate a peer-to-peer performance data sharing approach for collaborative performance modeling of distributed dataflow applications. Our proposed data distribution layer enables access to performance data in a decentralized manner, thereby facilitating collaborative modeling approaches and allowing for improved prediction capabilities and hence increased resource efficiency. In our evaluation, we assess our approach with regard to deployment, data replication, and data validation, through experiments with a prototype implementation and simulation, demonstrating feasibility and allowing discussion of potential limitations and next steps.

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arXiv2023

Karasu: A Collaborative Approach to Efficient Cluster Configuration for Big Data Analytics

Selecting the right resources for big data analytics jobs is hard because of the wide variety of configuration options like machine type and cluster size. As poor choices can have a significant impact on resource efficiency, cost, and energy usage, automated approaches are gaining popularity. Most existing methods rely on profiling recurring workloads to find near-optimal solutions over time. Due to the cold-start problem, this often leads to lengthy and costly profiling phases. However, big data analytics jobs across users can share many common properties: they often operate on similar infrastructure, using similar algorithms implemented in similar frameworks. The potential in sharing aggregated profiling runs to collaboratively address the cold start problem is largely unexplored. We present Karasu, an approach to more efficient resource configuration profiling that promotes data sharing among users working with similar infrastructures, frameworks, algorithms, or datasets. Karasu trains lightweight performance models using aggregated runtime information of collaborators and combines them into an ensemble method to exploit inherent knowledge of the configuration search space. Moreover, Karasu allows the optimization of multiple objectives simultaneously. Our evaluation is based on performance data from diverse workload executions in a public cloud environment. We show that Karasu is able to significantly boost existing methods in terms of performance, search time, and cost, even when few comparable profiling runs are available that share only partial common characteristics with the target job.

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arXiv2023

Compressed Sensing of Field-resolved Molecular Fingerprints Beyond the Nyquist Frequency

Ultrashort time-domain spectroscopy and field-resolved spectroscopy of molecular fingerprints are gold standards for detecting samples' constituents and internal dynamics. However, they are hindered by the Nyquist criterion, leading to prolonged data acquisition, processing times, and sizable data volumes. In this work, we present the first experimental demonstration of compressed sensing on field-resolved molecular fingerprinting by employing random scanning. Our measurements enable pinpointing the primary absorption peaks of atmospheric water vapor in response to terahertz light transients while sampling beyond the Nyquist limit. By drastically undersampling the electric field of the molecular response at a Nyquist frequency of 0.8 THz, we could successfully identify water absorption peaks up to 2.5 THz with a mean squared error of 12 * 10^-4. To our knowledge, this is the first experimental demonstration of time-domain compressed sensing, paving the path towards real-time field-resolved fingerprinting and acceleration of advanced spectroscopic techniques.

physics.optics↗

arXiv2023

Selecting Efficient Cluster Resources for Data Analytics: When and How to Allocate for In-Memory Processing?

Distributed dataflow systems such as Apache Spark or Apache Flink enable parallel, in-memory data processing on large clusters of commodity hardware. Consequently, the appropriate amount of memory to allocate to the cluster is a crucial consideration. In this paper, we analyze the challenge of efficient resource allocation for distributed data processing, focusing on memory. We emphasize that in-memory processing with in-memory data processing frameworks can undermine resource efficiency. Based on the findings of our trace data analysis, we compile requirements towards an automated solution for efficient cluster resource allocation.

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arXiv2022

Perona: Robust Infrastructure Fingerprinting for Resource-Efficient Big Data Analytics

Choosing a good resource configuration for big data analytics applications can be challenging, especially in cloud environments. Automated approaches are desirable as poor decisions can reduce performance and raise costs. The majority of existing automated approaches either build performance models from previous workload executions or conduct iterative resource configuration profiling until a near-optimal solution has been found. In doing so, they only obtain an implicit understanding of the underlying infrastructure, which is difficult to transfer to alternative infrastructures and, thus, profiling and modeling insights are not sustained beyond very specific situations. We present Perona, a novel approach to robust infrastructure fingerprinting for usage in the context of big data analytics. Perona employs common sets and configurations of benchmarking tools for target resources, so that resulting benchmark metrics are directly comparable and ranking is enabled. Insignificant benchmark metrics are discarded by learning a low-dimensional representation of the input metric vector, and previous benchmark executions are taken into consideration for context-awareness as well, allowing to detect resource degradation. We evaluate our approach both on data gathered from our own experiments as well as within related works for resource configuration optimization, demonstrating that Perona captures the characteristics from benchmark runs in a compact manner and produces representations that can be used directly.

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arXiv2022

Ruya: Memory-Aware Iterative Optimization of Cluster Configurations for Big Data Processing

Selecting appropriate computational resources for data processing jobs on large clusters is difficult, even for expert users like data engineers. Inadequate choices can result in vastly increased costs, without significantly improving performance. One crucial aspect of selecting an efficient resource configuration is avoiding memory bottlenecks. By knowing the required memory of a job in advance, the search space for an optimal resource configuration can be greatly reduced. Therefore, we present Ruya, a method for memory-aware optimization of data processing cluster configurations based on iteratively exploring a narrowed-down search space. First, we perform job profiling runs with small samples of the dataset on just a single machine to model the job's memory usage patterns. Second, we prioritize cluster configurations with a suitable amount of total memory and within this reduced search space, we iteratively search for the best cluster configuration with Bayesian optimization. This search process stops once it converges on a configuration that is believed to be optimal for the given job. In our evaluation on a dataset with 1031 Spark and Hadoop jobs, we see a reduction of search iterations to find an optimal configuration by around half, compared to the baseline.

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arXiv2022

Reshi: Recommending Resources for Scientific Workflow Tasks on Heterogeneous Infrastructures

Scientific workflows typically comprise a multitude of different processing steps which often are executed in parallel on different partitions of the input data. These executions, in turn, must be scheduled on the compute nodes of the computational infrastructure at hand. This assignment is complicated by the facts that (a) tasks typically have highly heterogeneous resource requirements and (b) in many infrastructures, compute nodes offer highly heterogeneous resources. In consequence, predictions of the runtime of a given task on a given node, as required by many scheduling algorithms, are often rather imprecise, which can lead to sub-optimal scheduling decisions. We propose Reshi, a method for recommending task-node assignments during workflow execution that can cope with heterogeneous tasks and heterogeneous nodes. Reshi approaches the problem as a regression task, where task-node pairs are modeled as feature vectors over the results of dedicated micro benchmarks and past task executions. Based on these features, Reshi trains a regression tree model to rank and recommend nodes for each ready-to-run task, which can be used as input to a scheduler. For our evaluation, we benchmarked 27 AWS machine types using three representative workflows. We compare Reshi's recommendations with three state-of-the-art schedulers. Our evaluation shows that Reshi outperforms HEFT by a mean makespan reduction of 7.18% and 18.01% assuming a mean task runtime prediction error of 15%.

cs.DC↗

arXiv2022

Get Your Memory Right: The Crispy Resource Allocation Assistant for Large-Scale Data Processing

Distributed dataflow systems like Apache Spark and Apache Hadoop enable data-parallel processing of large datasets on clusters. Yet, selecting appropriate computational resources for dataflow jobs -- that neither lead to bottlenecks nor to low resource utilization -- is often challenging, even for expert users such as data engineers. Further, existing automated approaches to resource selection rely on the assumption that a job is recurring to learn from previous runs or to warrant the cost of full test runs to learn from. However, this assumption often does not hold since many jobs are too unique. Therefore, we present Crispy, a method for optimizing data processing cluster configurations based on job profiling runs with small samples of the dataset on just a single machine. Crispy attempts to extrapolate the memory usage for the full dataset to then choose a cluster configuration with enough total memory. In our evaluation on a dataset with 1031 Spark and Hadoop jobs, we see a reduction of job execution costs by 56% compared to the baseline, while on average spending less than ten minutes on profiling runs per job on a consumer-grade laptop.

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arXiv2022

Collaborative Cluster Configuration for Distributed Data-Parallel Processing: A Research Overview

Many organizations routinely analyze large datasets using systems for distributed data-parallel processing and clusters of commodity resources. Yet, users need to configure adequate resources for their data processing jobs. This requires significant insights into expected job runtimes and scaling behavior, resource characteristics, input data distributions, and other factors. Unable to estimate performance accurately, users frequently overprovision resources for their jobs, leading to low resource utilization and high costs. In this paper, we present major building blocks towards a collaborative approach for optimization of data processing cluster configurations based on runtime data and performance models. We believe that runtime data can be shared and used for performance models across different execution contexts, significantly reducing the reliance on the recurrence of individual processing jobs or, else, dedicated job profiling. For this, we describe how the similarity of processing jobs and cluster infrastructures can be employed to combine suitable data points from local and global job executions into accurate performance models. Furthermore, we outline approaches to performance prediction via more context-aware and reusable models. Finally, we lay out how metrics from previous executions can be combined with runtime monitoring to effectively re-configure models and clusters dynamically.

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arXiv2022

Lotaru: Locally Estimating Runtimes of Scientific Workflow Tasks in Heterogeneous Clusters

Many scientific workflow scheduling algorithms need to be informed about task runtimes a-priori to conduct efficient scheduling. In heterogeneous cluster infrastructures, this problem becomes aggravated because these runtimes are required for each task-node pair. Using historical data is often not feasible as logs are typically not retained indefinitely and workloads as well as infrastructure changes. In contrast, online methods, which predict task runtimes on specific nodes while the workflow is running, have to cope with the lack of example runs, especially during the start-up. In this paper, we present Lotaru, a novel online method for locally estimating task runtimes in scientific workflows on heterogeneous clusters. Lotaru first profiles all nodes of a cluster with a set of short-running and uniform microbenchmarks. Next, it runs the workflow to be scheduled on the user's local machine with drastically reduced data to determine important task characteristics. Based on these measurements, Lotaru learns a Bayesian linear regression model to predict a task's runtime given the input size and finally adjusts the predicted runtime specifically for each task-node pair in the cluster based on the micro-benchmark results. Due to its Bayesian approach, Lotaru can also compute robust uncertainty estimates and provides them as an input for advanced scheduling methods. Our evaluation with five real-world scientific workflows and different datasets shows that Lotaru significantly outperforms the baselines in terms of prediction errors for homogeneous and heterogeneous clusters.

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arXiv2021

On the Potential of Execution Traces for Batch Processing Workload Optimization in Public Clouds

With the growing amount of data, data processing workloads and the management of their resource usage becomes increasingly important. Since managing a dedicated infrastructure is in many situations infeasible or uneconomical, users progressively execute their respective workloads in the cloud. As the configuration of workloads and resources is often challenging, various methods have been proposed that either quickly profile towards a good configuration or determine one based on data from previous runs. Still, performance data to train such methods is often lacking and must be costly collected. In this paper, we propose a collaborative approach for sharing anonymized workload execution traces among users, mining them for general patterns, and exploiting clusters of historical workloads for future optimizations. We evaluate our prototype implementation for mining workload execution graphs on a publicly available trace dataset and demonstrate the predictive value of workload clusters determined through traces only.

cs.DC↗

arXiv2021

Training Data Reduction for Performance Models of Data Analytics Jobs in the Cloud

Distributed dataflow systems like Apache Flink and Apache Spark simplify processing large amounts of data on clusters in a data-parallel manner. However, choosing suitable cluster resources for distributed dataflow jobs in both type and number is difficult, especially for users who do not have access to previous performance metrics. One approach to overcoming this issue is to have users share runtime metrics to train context-aware performance models that help find a suitable configuration for the job at hand. A problem when sharing runtime data instead of trained models or model parameters is that the data size can grow substantially over time. This paper examines several clustering techniques to minimize training data size while keeping the associated performance models accurate. Our results indicate that efficiency gains in data transfer, storage, and model training can be achieved through training data reduction. In the evaluation of our solution on a dataset of runtime data from 930 unique distributed dataflow jobs, we observed that, on average, a 75% data reduction only increases prediction errors by one percentage point.

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arXiv2021

Tarema: Adaptive Resource Allocation for Scalable Scientific Workflows in Heterogeneous Clusters

Scientific workflow management systems like Nextflow support large-scale data analysis by abstracting away the details of scientific workflows. In these systems, workflows consist of several abstract tasks, of which instances are run in parallel and transform input partitions into output partitions. Resource managers like Kubernetes execute such workflow tasks on cluster infrastructures. However, these resource managers only consider the number of CPUs and the amount of available memory when assigning tasks to resources; they do not consider hardware differences beyond these numbers, while computational speed and memory access rates can differ significantly. We propose Tarema, a system for allocating task instances to heterogeneous cluster resources during the execution of scalable scientific workflows. First, Tarema profiles the available infrastructure with a set of benchmark programs and groups cluster nodes with similar performance. Second, Tarema uses online monitoring data of tasks, assigning labels to tasks depending on their resource usage. Third, Tarema uses the node groups and task labels to dynamically assign task instances evenly to resources based on resource demand. Our evaluation of a prototype implementation for Kubernetes, using five real-world Nextflow workflows from the popular nf-core framework and two 15-node clusters consisting of different virtual machines, shows a mean reduction of isolated job runtimes by 19.8% compared to popular schedulers in widely-used resource managers and 4.54% compared to the heuristic SJFN, while providing a better cluster usage. Moreover, executing two long-running workflows in parallel and on restricted resources shows that Tarema is able to reduce the runtimes even more while providing a fair cluster usage.

cs.DC↗

arXiv2021

Enel: Context-Aware Dynamic Scaling of Distributed Dataflow Jobs using Graph Propagation

Distributed dataflow systems like Spark and Flink enable the use of clusters for scalable data analytics. While runtime prediction models can be used to initially select appropriate cluster resources given target runtimes, the actual runtime performance of dataflow jobs depends on several factors and varies over time. Yet, in many situations, dynamic scaling can be used to meet formulated runtime targets despite significant performance variance. This paper presents Enel, a novel dynamic scaling approach that uses message propagation on an attributed graph to model dataflow jobs and, thus, allows for deriving effective rescaling decisions. For this, Enel incorporates descriptive properties that capture the respective execution context, considers statistics from individual dataflow tasks, and propagates predictions through the job graph to eventually find an optimized new scale-out. Our evaluation of Enel with four iterative Spark jobs shows that our approach is able to identify effective rescaling actions, reacting for instance to node failures, and can be reused across different execution contexts.

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