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Jonghoon Lee

Publications and source records attributed to Jonghoon Lee.

9 recordsLinked to original sources

Pose6DAug: Physically Plausible Multi-view Object Swapping for Robot Data Augmentation

Vision-language-action (VLA) policies have shown strong potential for general-purpose manipulation, yet they often fail on novel, out-of-distribution objects whose appearance or geometry deviates from the training distribution. The standard remedy is to collect multi-view teleoperation data for every failure case, but this scales poorly in both cost and time. We introduce Pose6DAug, a failure-driven data augmentation framework that turns a policy's own successful episodes into targeted demonstrations for its failure modes, without any new data collection. Our key insight is that each successful episode already encodes a physically valid action trajectory together with calibrated multi-view observations. By swapping only the manipulated object while preserving this trajectory, we obtain new and physically grounded demonstrations. However, naive 2D video editing breaks multi-view consistency and physical plausibility, particularly under heavy occlusion and egocentric viewpoints. Our method instead operates directly in 3D, anchoring the target object with an explicit mesh driven by a temporally coherent 6D pose trajectory, ensuring geometrically consistent renderings across all camera views. Fine-tuning a VLA on data augmented by our method improves success rates by 16.5% relative to the state-of-the-art baseline on novel objects, while preserving in-distribution performance. These results show that multi-view and physically consistent augmentation is a practical path to scalable VLA generalization.

cs.RO

DNACHUNKER: Learnable Tokenization for DNA Language Models

DNA language models are increasingly used to represent genomic sequence, yet their effectiveness depends critically on how raw nucleotides are converted into model inputs. Unlike natural language, DNA offers no canonical boundaries, making fixed tokenizations a brittle design choice under shifts, indels, and local repeats. We introduce DNAChunker, a masked DNA language model that incorporates a learnable adaptive segmentation module to produce context-dependent, variable-length units. Building on a dynamic segmentation procedure, DNAChunker learns to allocate finer granularity to functionally enriched regions while compressing repetitive or redundant sequence. We pretrain DNAChunker on the human reference genome and evaluate it across five benchmarks, where it consistently improves over strong fixed-tokenization baselines. Further analyses and ablations indicate that unlike fixed tokenizations, segmentation is learned in a biologically-informed, mutation-resilient manner.

q-bio.GN

Efficient LLM Collaboration via Planning

Recently, large language models (LLMs) have demonstrated strong performance, ranging from simple to complex tasks. However, while large models achieve remarkable results across diverse tasks, they often incur substantial monetary inference cost, making frequent use impractical for many applications. In contrast, small models are often freely available and easy to deploy locally, but their performance on complex tasks remains limited. This trade-off raises a natural question: how can small and large models efficiently collaborate to combine their complementary strengths? To bridge this trade-off, we propose COPE, a test-time collaboration framework. A planner model first generates a plan that serves as a lightweight intermediate that guides a downstream executor model. Small and large models take turns acting as planner and executor, exchanging plans in a multi-stage cascade to collaboratively solve tasks. Through comprehensive experiments on benchmarks spanning mathematical reasoning, code generation, open-ended tasks, and agent tasks, we demonstrate that COPE achieves performance comparable to large proprietary models, while drastically reducing the inference API cost. These results highlight planning as an effective prior for cost-efficient inference.

cs.AI

Particle dynamics and pattern formation in a rotating suspension of positively buoyant particles

Numerical simulations of positively-buoyant suspension in a horizontally rotating cylinder were performed to study the formation of radial and axial patterns. The order parameter for low-frequency segregated phase and dispersed phase is similar to that predicted for the settling suspension by J. Lee, and A. J. C. Ladd [J. Fluid Mech., 577, 2007], which is the average angular velocity of the particles. The particle density profiles for axial bands in the buoyancy dominated phase shows an amplitude equivalent to the diameter of the cylinder. Axial density profiles show sinusoidal behaviour for drag dominant phase and oscillating sinusoidal behaviour for centrifugal force dominant phase. Results also indicate that the traveling bands are formed as a consequence of the inhomogeneous distribution of particles arising from a certain imbalance of drag, buoyancy and centrifugal forces. In the centrifugal limit, particles move towards the center of the cylinder aggregating to form a dense core of particles with its axis coinciding with that of the rotating cylinder, a behaviour which is in contrast to the sedimenting particles. The particle distribution patterns obtained from the simulations are found to be in good agreement with the experiments of Kalyankar et al. [Phys. Fluids, 20, 2008].

cond-mat.soft

How to Characterize Thermal Transport Capability of 2D Materials Fairly? - Sheet Thermal Conductance and the Choice of Thickness

Ever since the discovery of the record-high thermal conductivity of single layer graphene, thermal transport capability of monolayer 2D materials has been under constant spotlight. Since thermal conductivity is an intensive property for 3D materials and the thickness of 2D materials is not well defined, different definitions of thickness in literature have led to ambiguity towards predicting thermal conductivity values and thus in understanding the heat transfer capability of different monolayer 2D materials. We argue that if conventional definition of thermal conductivity should be used as the quantity to compare the heat transfer capability of various monolayer 2D materials, then the same thickness should be used. Alternatively, to circumvent the problem of ambiguous thickness completely, we also suggest that a "sheet thermal conductance" to be defined as an intensive 2D material property when characterizing the heat transfer capability of 2D materials. When converting literature thermal conductivity values of monolayer materials to this new property, some new features that were not displayed when using different thicknesses show up.

cond-mat.mtrl-sci

Hydrogenation of Penta-Graphene Leads to Unexpected Large Improvement in Thermal Conductivity

Penta-graphene (PG) has been identified as a novel 2D material with an intrinsic bandgap, which makes it especially promising for electronics applications. In this work, we use first-principles lattice dynamics and iterative solution of the phonon Boltzmann transport equation (BTE) to determine the thermal conductivity of PG and its more stable derivative - hydrogenated penta-graphene (HPG). As a comparison, we also studied the effect of hydrogenation on graphene thermal conductivity. In contrast to hydrogenation of graphene, which leads to a dramatic decrease in thermal conductivity (from 3590 to 1328 W/mK - a 63% reduction), HPG shows a notable increase in thermal conductivity (615 W/mK), which is 76% higher than that of PG (350 W/mK). The high thermal conductivity of HPG makes it more thermally conductive than most other semi-conducting 2D materials, such as the transition metal chalcogenides. Our detailed analyses show that the primary reason for the counter-intuitive hydrogenation-induced thermal conductivity enhancement is the weaker bond anharmonicity in HPG than PG. This leads to weaker phonon scattering after hydrogenation, despite the increase in the phonon scattering phase space. The high thermal conductivity of HPG may inspire intensive research around HPG and other derivatives of PG as potential materials for future nanoelectronic devices. The fundamental physics understood from this study may open up a new strategy to engineer thermal transport properties of other 2D materials by controlling bond anharmonicity via functionalization.

cond-mat.mtrl-sci

Multiscale modelling strategy using the lattice Boltzmann method for polymer dynamics in a turbulent flow

Polymer dynamics in a turbulent flow is a problem spanning several orders of magnitude of length and time scales. A microscopic simulation covering all those scales from the polymer segment to the inertial scale of turbulence seems impossible within the foreseeable future. We propose a multiscale simulation strategy to enhance the spatio-temporal resolution of local Lagrangian turbulent flow by matching two different simulation techniques, i. e. direct numerical simulation for the flow as a whole, and the lattice Boltzmann method coupled to polymer dynamics at the Kolmogorov dissipation scale. Local turbulent flows sampled by Lagrangian tracer particles in the direct numerical simulation are reproduced in the lattice Boltzmann model with a finer resolution, by supplying the latter with both the correct initial condition as well as the correct time-dependent boundary condition, sampled from the former. When combined with a Molecular Dynamics simulation of a polymer chain in the lattice Boltzmann model, it provides a strategy to simulate the \emph{passive} dynamics of a polymer chain in a turbulent flow covering all those scales. While this approach allows for a fairly realistic model of the macromolecule, the back-coupling to the flow on the large scales is missing.

cond-mat.stat-mech

Complex coacervation: A field theoretic simulation study of polyelectrolyte complexation

Using the complex Langevin sampling strategy, field theoretic simulations are performed to study the equilibrium phase behavior and structure of symmetric polycation-polyanion mixtures without salt in good solvents. Static structure factors for the segment density and charge density are calculated and used to study the role of fluctuations in the electrostatic and chemical potential fields beyond the random phase approximation. We specifically focus on the role of charge density and molecular weight on the structure and complexation behavior of polycation-polyanion solutions. A demixing phase transition to form a ``complex coacervate'' is observed in strongly charged systems, and the corresponding spinodal and binodal boundaries of the phase diagram are investigated.

cond-mat.soft

Field-Theoretic Simulations of Polyelectrolyte Complexation

We briefly discuss our recent field-theoretic study of polyelectrolyte complexation, which occurs in solutions of two oppositely charged polyelectrolytes. Charged systems require theoretical methods beyond the mean-field (or self-consistent field) approximation; indeed, mean-field theory is qualitatively incorrect for such polyelectrolyte solutions. Both analytical (one-loop) and numerical (complex Langevin) methods to account for charge correlations are discussed. In particular, the first application of field-theoretic simulations to polyelectrolyte systems is reported. The polyelectrolyte charge-charge correlation length and a phase diagram are provided; effects of charge redistribution are qualitatively explored.

cond-mat.soft