arXiv subjects

Joonwoo Jeong

Publications and source records attributed to Joonwoo Jeong.

14 recordsLinked to original sources

arXiv2026

Polymer-Regulated Freezing of Water Droplets Revealed by Synchrotron X-ray Imaging and Raman Spectroscopy

Adding a polymer to a sessile water droplet not only lowers its freezing point but also suppresses the tip singularity that forms during its freezing on cold substrates. Here, we employ synchrotron X-ray and Raman imaging to elucidate the spatiotemporal mechanism underlying tip suppression in an aqueous polyvinyl alcohol (PVA) solution, a model polymer solution. As the polymer concentration increases, we observe slower propagation of the freezing front, reduced bubble entrapment, and a progressively more rounded apex across the volumes and molecular weights examined. X-ray tomography reveals that frozen PVA droplets retain low X-ray transmittance domains in their interiors and at the surface, and Raman spectral mapping confirms that these domains correspond to PVA-enriched regions, providing direct evidence of freeze-induced polymer segregation. These findings indicate that PVA is redistributed heterogeneously during water solidification rather than shifting bulk properties homogeneously, providing a spatially resolved framework for interpreting the observed tip blunting and the suppression of discrete bubble entrapment. Our work identifies freeze-induced polymer segregation as a pathway by which a dissolved polymer regulates both the external shape and the internal structure of a freezing droplet, and these findings shed light on potential applications in freezing-based processes such as freeze-casting and cryopreservation.

cond-mat.soft↗

arXiv2026

Density-Dependent Transition in Bacterial Self-Organization Driven by Confinement and Aerotaxis

We experimentally investigate how aerotactic bacteria, confined within a thin liquid film between two solid substrates, respond to a controlled oxygen gradient. We find that the total bacterial number density dictates which mechanism dominates the steady-state spatial distribution: wall accumulation or aerotaxis. At low densities, despite receiving oxygen only from one substrate, motile bacteria accumulate at both walls, forming a symmetric distribution. In contrast, pronounced aerotactic migration toward the oxygen-supplying wall emerges as the density increases. Analyzing the temporal evolution of this bacterial distribution reveals that the aerotactic response is driven by a self-generated oxygen gradient induced by collective respiration. Our diffusion-advection model of bacteria and oxygen, accounting for aerotactic migration, hydrodynamic attraction to the walls, and respiration, quantitatively reproduces our experimental observations and provides valuable insights into bacterial self-organization within complex environments.

cond-mat.soft↗

arXiv2026

Molecular Origin of UV-Induced Irreversible Phase Changes in a Chromonic Liquid Crystal

Aqueous solutions of disodium cromoglycate (DSCG), a representative model system for chromonic liquid crystals, exhibit temperature- and concentration-dependent phase behaviors spanning isotropic, nematic, and columnar phases, as well as their coexistence regions. Nastishin et al. (2018) reported that UV irradiation can alter the phase diagram, transforming a nematic phase into a nematic-isotropic biphasic state due to weakened molecular attractions, accompanied by a slow post-irradiation relaxation. Here, we revisit this phenomenon and elucidate the molecular origin of this phase diagram shift: the UV-induced photodegradation of DSCG into specific photodegradation products, which we identify using liquid chromatography-mass spectrometry. Through an integrated approach combining in situ X-ray scattering and polarized optical microscopy, we demonstrate that these degradation products disrupt the self-assembly of DSCG aggregates, thereby expanding the isotropic and biphasic regions in the phase diagram. These findings demonstrate that chromonic assemblies and their phase behaviors are highly sensitive to minor chemical alterations, providing a potential route toward light-controlled self assembly of soft matter.

cond-mat.soft↗

arXiv2026

Anisotropic Diffusion in Lyotropic Chromonic Liquid Crystal using Fluorescence Recovery After Photobleaching

Anisotropic diffusion governs transport in a wide range of soft and biological materials, where microstructure and molecular interactions jointly shape how matter moves. Here, we quantitatively investigate anisotropic molecular transport in lyotropic chromonic liquid crystals (LCLCs) using fluorescence recovery after photobleaching (FRAP). Disodium cromoglycate (DSCG) serves as a model LCLC system, and diffusion is measured across isotropic, nematic, and columnar phases as concentration and temperature are varied. To disentangle the roles of microstructure and molecular interactions, we employ two fluorescent tracers with distinct affinities for the LCLC aggregates: Acridine Orange (AO), which intercalates into DSCG aggregates, and Bodipy, which interacts weakly and remains largely in the aqueous phase. Fourier-space FRAP analysis independently resolves the parallel and perpendicular diffusion coefficients for both dyes relative to the liquid-crystal alignment. In the nematic phase, diffusion becomes anisotropic, with faster transport along the liquid-crystal director. As the DSCG concentration increases, AO dye molecules that are strongly coupled to the aggregates exhibit a slowdown in all directions, reflecting enhanced packing and steric confinement of the LC microstructure. In contrast, weakly interacting Bodipy dye molecules display enhanced transport along the alignment direction as the DSCG concentration increases in the nematic regime, suggesting the emergence of microscopic channels that guide motion, analogous to transport in oriented porous media. These results reveal how the evolving microstructure of LCLCs controls effective diffusion and provide a quantitative framework for understanding and designing anisotropic transport in aligned soft materials.

cond-mat.soft↗

arXiv2025

X-ray Microscopy Study of Freezing Sessile Droplets

A sessile water droplet on a cold substrate freezes into a shape with a sharp apex because of water's expansion upon freezing, yielding a universal tip angle across various conditions. Using \textit{in situ} X-ray imaging, we report that this angle changes with substrate temperature, and the deviation originates from bubble formation during freezing. Three-dimensional tomography enables direct quantification of the effective ice-water density ratio, accounting for trapped bubbles. Incorporating this effective density ratio reconciles the temperature-dependent tip angles. We also confirm that a bubble-free frozen droplet in a vacuum chamber exhibits the universal tip angle. Furthermore, X-ray imaging allows us to measure the three-phase boundary angles \textit{in situ}, thereby validating the geometric theory behind tip formation. These findings advance our understanding of the freezing dynamics associated with multiphase systems and highlight the capabilities of high-resolution X-ray imaging in ice research.

cond-mat.soft↗

arXiv2025

Magnetically controlled double-twist director configuration of lyotropic chromonic liquid crystals in cylinders: Energetics, topological defects, and instability

We study experimentally how the double-twist (DT) configuration of cylindrically confined lyotropic chromonic liquid crystals (LCLCs) responds to axial magnetic fields. Our director field model unveils the energetics behind the magnetic field-induced transition in the twist profile of the DT configuration. Additionally, we catalog three different types of topological defects -- residing between the DT domains of opposite handedness -- before and after the field application, and propose a new director field model for the defect with a ring disclination. Lastly, we report a symmetry-breaking instability occurring when the field strength exceeds a critical value, suggesting an eccentric DT director field model that reproduces a helix-like optical texture. Our systematic investigation not only enhances our understanding of LCLC energetics but also provides potential for precise control over DT configurations.

cond-mat.soft↗

arXiv2024

Motility Modulates the Partitioning of Bacteria in Aqueous Two-Phase Systems

We study the partitioning of motile bacteria in an aqueous two-phase mixture of dextran (DEX) and polyethylene glycol (PEG), which can phase separate into DEX-rich and PEG-rich phases. While non-motile bacteria partition exclusively into the DEX-rich phase in all conditions tested, we observed that motile bacteria penetrate the soft DEX/PEG interface and partition variably among the two phases. For our model organism \textit{Bacillus subtilis}, the fraction of motile bacteria in the DEX-rich phase increased from 0.58 to 1 as we increased DEX composition within the two-phase region. We hypothesized that the chemical affinity between DEX and the bacteria cell wall acts to weakly confine the bacteria within the DEX-rich phase; however, motility can generate sufficient mechanical forces to overcome the soft confinement and propel the bacteria into the PEG-rich phase. Using optical tweezers to drag a bacterium across the DEX/PEG interface, we demonstrate that the overall bacteria partitioning is determined by a competition between the interfacial forces and bacterial propulsive forces. Our measurements are supported by a theoretical model of dilute active rods embedded within a periodic soft confinement potential.

cond-mat.soft↗

arXiv2024

Solvent isotopic effect on the phase transition of lyotropic chromonic liquid crystals: Heavy water makes mesogens less charged

The interplay among solute and solvent molecules in lyotropic mesophases governs their physicochemical properties, such as phase behaviors and viscoelasticity. In our model system, a lyotropic chromonic liquid crystal (LCLC) made by disodium cromoglycate (DSCG), charged plank-like molecules self-assemble to form elongated aggregates via non-covalent attractions in water (H$_{2}$O). The aggregates align to exhibit liquid crystalline phases: nematic and columnar phases. Here, we report the isotopic effect on the phase behavior of the LCLC when D$_2$O is substituted for H$_2$O. D$_2$O-DSCG exhibits higher nematic-to-isotropic phase transition temperatures than H$_2$O-DSCG. X-ray scattering reveals considerably longer inter-aggregate correlation lengths in D$_2$O-LCLCs. In contrast, the other microstructural properties, such as inter-aggregate distances and intra-aggregate correlation lengths, remain almost the same. Our $^{23}$Na FT-NMR measurement reveals that D$_2$O-DSCG aggregates are less charged with more counter-ions, Na$^+$, bound to them than H$_2$O-DSCG aggregates. Weaker electrostatic repulsion between aggregates may stabilize the nematic phase, and this solvent isotopic effect may generally apply to diverse aqueous lyotropic mesophases with electrostatic interactions.

cond-mat.soft↗

arXiv2024

Motile bacteria crossing liquid-liquid interfaces

Real-life bacteria often swim in complex fluids, but our understanding of the interactions between bacteria and complex surroundings is still evolving. In this work, rod-like \textit{Bacillus subtilis} swims in a quasi-2D environment with aqueous liquid-liquid interfaces, i.e., the isotropic-nematic coexistence phase of an aqueous chromonic liquid crystal. Focusing on the bacteria motion near and at the liquid-liquid interfaces, we collect and quantify bacterial trajectories ranging across the isotropic to the nematic phase. Despite its small magnitude, the interfacial tension of the order of 10 $\mathrm{μN/m}$ at the isotropic-nematic interface justifies our observations that bacteria swimming more perpendicular to the interface have a higher probability of crossing the interface. Our force-balance model, considering the interfacial tension, further predicts how the length and speed of the bacteria affect their crossing behaviors. We also find, as soon as the bacteria cross the interface and enter the nematic phase, they wiggle less, but faster, and that this occurs as the flagellar bundles aggregate within the nematic phase.

cond-mat.soft↗

arXiv2023

Confinement twists achiral liquid crystals and causes chiral liquid crystals to twist in the opposite handedness: Cases in and around sessile droplets

We study the chiral symmetry breaking and metastability of confined nematic lyotropic chromonic liquid crystal (LCLC) with and without chiral dopants. The isotropic-nematic coexistence phase of the LCLC renders two confining geometries: sessile isotropic(I) droplets surrounded by the nematic(N) phase and sessile nematic droplets immersed in the isotropic background. In the achiral system with no dopants, LCLC's elastic anisotropy and topological defects induce a spontaneous twist deformation to lower the energetic penalty of splay deformation, resulting in spiral optical textures under crossed polarizers both in the I-in-N and N-in-I systems. While the achiral system exhibits both handednesses with an equal probability, a small amount of the chiral dopant breaks the balance. Notably, in contrast to the homochiral configuration of a chirally doped LCLC in bulk, the spiral texture of the disfavored handedness appears with a finite probability both in the I-in-N and N-in-I systems. We propose director field models explaining how chiral symmetry breaking arises by the energetics and the opposite-twist configurations exist as meta-stable structures in the energy landscape. These findings help us create and control chiral structures using confined LCs with large elastic anisotropy.

cond-mat.soft↗

arXiv2023

Suppressed terahertz dynamics of water confined in nanometer gaps

Nanoconfined waters have been extensively studied within various systems, demonstrating low permittivity under static conditions; however, their dynamics have been largely unexplored due to the lack of a robust platform, particularly in the terahertz (THz) regime where hydrogen bond dynamics occur. We report the THz complex refractive index of nanoconfined water within metal gaps ranging in width from 2 to 20 nanometers, spanning mostly interfacial waters all the way to quasi-bulk waters. These loop nanogaps, encasing water molecules, sharply enhance light-matter interactions, enabling precise measurements of refractive index, both real and imaginary parts, of nanometer-thick layers of water. Under extreme confinement, the suppressed dynamics of the long-range correlation of hydrogen bond networks corresponding to the THz frequency regime result in a significant reduction in the terahertz permittivity of even 'non-interfacial' water. This platform provides valuable insights into the long-range collective dynamics of water molecules which is crucial to understanding water-mediated processes such as protein folding, lipid rafts, and molecular recognition.

physics.optics↗

arXiv2023

Symmetrically pulsating bubbles swim in an anisotropic fluid by nematodynamics

Swimming in low-Reynolds-number fluids requires the breaking of time-reversal symmetry and centrosymmetry. Microswimmers, often with asymmetric shapes, exhibit nonreciprocal motions or exploit nonequilibrium processes to propel. The role of surrounding fluids has also attracted attention because viscoelastic, non-Newtonian, and anisotropic properties of fluids matter in propulsion efficiency and navigation. Here we experimentally demonstrate that anisotropic fluids, nematic liquid crystals (NLC), can make a pulsating spherical bubble swim despite its centrosymmetric shape and time-symmetric motion. The NLC breaks the centrosymmetry by a deformed nematic director field with a topological defect accompanying the bubble. The nematodynamics renders the nonreciprocity in the pulsation-induced fluid flow. We also report the speed enhancement by confinement and the propulsion of another symmetry-broken bubble dressed by a bent disclination. Our experiments and theory elucidate another possible mechanism of moving bodies in complex fluids by spatiotemporal symmetry breaking.

cond-mat.soft↗

arXiv2022

Birth and Death of One-dimensional Domains in Cylindrically Confined Liquid Crystals

Nematic liquid crystal (LC) is a partially ordered matter that has been a popular model system for studying a variety of topological behaviors in condensed matter. In this work, utilizing a spontaneously twisting achiral LC, we introduce a one-dimensional (1D) model system to investigate how domains and topological defects arise and annihilate, reminiscing the Kibble-Zurek mechanism. Because of the unusual elastic properties, lyotropic chromonic LCs form a double-twist structure in a cylindrical capillary with degenerate planar anchoring, exhibiting chiral symmetry breaking despite the absence of intrinsic chirality. Consequently, the domains of different handedness coexist with equal probabilities, forming the topological defects between them. We experimentally measure the domain-length distribution and its time evolution, best fitted by a three-parameter log-normal distribution. We propose that the coalescence within a train of 1D domains having the normal length distribution and randomly assigned handedness, may lead to the domains of the log-normal-like length distribution. Our cylindrically confined LC provides a practical model system to study the formation and annihilation of domains and defects in 1D.

cond-mat.soft↗

arXiv2015

Chiral structures and defects of lyotropic chromonic liquid crystals induced by saddle-splay elasticity

An experimental and theoretical study of lyotropic chromonic liquid crystals (LCLCs) confined in cylinders with degenerate planar boundary conditions elucidates LCLC director configurations. When the Frank saddle-splay modulus is more than twice the twist modulus, the ground state adopts an inhomogeneous escaped-twisted configuration. Analysis of the configuration yields a large saddle-splay modulus, which violates Ericksen inequalities but not thermodynamic stability. Lastly, we observe point defects between opposite-handed domains and explain a preference for point defects over domain walls.

cond-mat.soft↗