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Jordan G. Bryan

Publications and source records attributed to Jordan G. Bryan.

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The multirank likelihood for semiparametric canonical correlation analysis

Many analyses of multivariate data focus on evaluating the dependence between two sets of variables, rather than the dependence among individual variables within each set. Canonical correlation analysis (CCA) is a classical data analysis technique that estimates parameters describing the dependence between such sets. However, inference procedures based on traditional CCA rely on the assumption that all variables are jointly normally distributed. We present a semiparametric approach to CCA in which the multivariate margins of each variable set may be arbitrary, but the dependence between variable sets is described by a parametric model that provides low-dimensional summaries of dependence. While maximum likelihood estimation in the proposed model is intractable, we propose two estimation strategies: one using a pseudolikelihood for the model and one using a Markov chain Monte Carlo (MCMC) algorithm that provides Bayesian estimates and confidence regions for the between-set dependence parameters. The MCMC algorithm is derived from a multirank likelihood function, which uses only part of the information in the observed data in exchange for being free of assumptions about the multivariate margins. We apply the proposed Bayesian inference procedure to Brazilian climate data and monthly stock returns from the materials and communications market sectors.

stat.ME

Smaller $p$-values in genomics studies using distilled historical information

Medical research institutions have generated massive amounts of biological data by genetically profiling hundreds of cancer cell lines. In parallel, academic biology labs have conducted genetic screens on small numbers of cancer cell lines under custom experimental conditions. In order to share information between these two approaches to scientific discovery, this article proposes a "frequentist assisted by Bayes" (FAB) procedure for hypothesis testing that allows historical information from massive genomics datasets to increase the power of hypothesis tests in specialized studies. The exchange of information takes place through a novel probability model for multimodal genomics data, which distills historical information pertaining to cancer cell lines and genes across a wide variety of experimental contexts. If the relevance of the historical information for a given study is high, then the resulting FAB tests can be more powerful than the corresponding classical tests. If the relevance is low, then the FAB tests yield as many discoveries as the classical tests. Simulations and practical investigations demonstrate that the FAB testing procedure can increase the number of effects discovered in genomics studies while still maintaining strict control of type I error and false discovery rates.

stat.AP