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José M. Algarín

Publications and source records attributed to José M. Algarín.

7 recordsLinked to original sources

Comment on electromagnetic noise cancellation in low-field MRI systems (arXiv:2509.05955v1, 2406.17804v3, 2210.06730v2, and related works)

In this Comment, we discuss recent approaches to electromagnetic interference (EMI) mitigation in low-field Magnetic Resonance Imaging (LF-MRI), as presented in arXiv preprints 2509.05955v1, 2406.17804v3, or 2210.06730v2. These and other works explore noise cancellation strategies based on external sensing coils for post-elimination of EMI. We argue that, under realistic conditions, such approaches lead to residual signal contamination that necessarily exceed that obtained with optimal hardware-based pre-elimination.

physics.med-ph↗

High-resolution ultra-low-field MRI with SNRAware denoising

Ultra-low-field (ULF, <0.1 T) magnetic resonance imaging (MRI) systems offer advantages in cost, portability, and accessibility, but their current utility is still limited by low signal-to-noise ratio (SNR). Deep learning (DL)-based denoising has emerged as a potential strategy to mitigate this limitation. In this work, we present a systematic evaluation of a high-performance DL denoising model trained using the SNRAware framework and applied to 88 mT and 72 mT data. Using a series of controlled experiments, we assessed model performance as a function of spatial resolution, coil impedance matching, readout bandwidth, input noise level, k-space undersampling, anatomy, image contrast, and scanner platform, and compared against analytical denoising algorithms. The model consistently increased the effective SNR of ULF acquisitions, enabling images with nominal spatial resolutions comparable to those commonly used in clinical 3 T protocols. Residual analyses indicated that the model predominantly removed stochastic noise while preserving underlying signal structure. At the same time, the results highlight some constraints: denoising performance remains dependent on the starting SNR of the acquisition, and training-domain mismatch influences behavior under certain artifact conditions. These findings suggest that DL-based denoising can significantly expand the practical capabilities of ULF MRI, while emphasizing potential benefits from hardware-software co-optimization and the need for rigorous clinical validation to determine the diagnostic value of denoised images.

physics.med-ph↗

Electromagnetic Noise Characterization and Suppression in Low-Field MRI Systems

Purpose: Low-field MRI systems operate at single MHz-range frequencies, where signal losses are primarily dominated by thermal noise from the radio-frequency (RF) receive coils. Achieving operation close to this limit is essential for maximizing imaging performance and signal-to-noise ratio (SNR). However, electromagnetic interference (EMI) from cabling, electronics, and patient loading often degrades system performance. Our goal is to develop and validate a practical protocol that guides users in identifying and suppressing electromagnetic noise in low-field MRI systems, enabling operation near the thermal noise limit. Methods: We present a systematic, stepwise methodology that includes diagnostic measurements, hardware isolation strategies, and good practices for cabling and shielding. Each step is validated with corresponding noise measurements under increasingly complex system configurations, both unloaded and with a human subject present. Results: Noise levels were monitored through the incremental assembly of a low-field MRI system, revealing key sources of EMI and quantifying their impact. Final configurations achieved noise within 1.5x the theoretical thermal bound with a subject in the scanner. Image reconstructions illustrate the direct relationship between system noise and image quality. Conclusion: The proposed protocol enables low-field MRI systems to operate close to fundamental noise limits in realistic conditions. The framework also provides actionable guidance for the integration of additional system components, such as gradient drivers and automatic tuning networks, without compromising SNR.

physics.med-ph↗

In-vivo imaging with a low-cost MRI scanner and cloud data processing in low-resource settings

Purpose: To demonstrate in-vivo imaging with a low-cost, low-field MRI scanner built and operated in Africa, and to show how systematic hardware and software improvements can mitigate the main operational limitations encountered in low-resource environments. Methods: A 46 mT Halbach scanner located at the Mbarara University of Science and Technology (Uganda) was upgraded through a complete reorganization of grounding and shielding, installation of new control electronics and open-source user-interface software. Noise performance was quantified using a standardized protocol and in-vivo brain images were acquired with three-dimensional RARE sequences. Distortion correction was implemented using cloud-based reconstructions incorporating magnetic field maps. Results: The revamped system reached noise levels routinely below three times the thermal limit and demonstrated stable operation over multi-day measurements. Three-dimensional T1- and T2-weighted brain images were successfully acquired and distortion-corrected with remote GPU-based reconstructions and near real-time visualization through the user interface. Conclusions: The results show that low-cost MRI systems can achieve clinically relevant image quality when electromagnetic noise and power-grid instabilities are properly addressed. This work highlights the feasibility of sustainable MRI development in low-resource settings and identifies stable power delivery and local capacity building as the key next steps toward clinical translation.

physics.med-ph↗

Elliptical Halbach magnet and gradient modules for low-field portable MRI

Objective. To develop methods to design the complete magnetic system for a truly portable MRI scanner for neurological and musculoskeletal (MSK) applications, optimized for field homogeneity, field of view (FoV) and gradient performance compared to existing low-weight configurations. Approach. We explore optimal elliptic-bore Halbach configurations based on discrete arrays of permanent magnets. In this way, we seek to improve the field homogeneity and remove constraints to the extent of the gradient coils typical of Halbach magnets. Specifically, we have optimized a tightly-packed distribution of magnetic Nd$_2$Fe$_14$B cubes with differential evolution algorithms, and a second array of shimming magnets with interior point and differential evolution methods. We have also designed and constructed an elliptical set of gradient coils that extend over the whole magnet length, maximizing the distance between the lobe centers. These are optimized with a target field method minimizing a cost function that considers also heat dissipation. Main result. We have employed the new toolbox to build the main magnet and gradient modules for a portable MRI scanner designed for point-of-care and residential use. The elliptical Halbach bore has semi-axes of 10 & 14 cm and the magnet generates a field of 87 mT homogeneous down to 5,700 ppm (parts per million) in a 20 cm diameter FoV, it weighs 216 kg and has a width of 65 cm and a height of 72 cm. Gradient efficiencies go up to around 0.8 mT/m/A, for a maximum of 12 mT/m with in 0.5 ms with 15 A & 15 V amplifier. The distance between lobes is 28 cm, significantly increased with respect to other Halbach-based scanners. Heat dissipation is around 25 W at maximum power, and gradient deviations from linearity are below 20% in a 20 cm sphere.

physics.med-ph↗

MaRCoS, an open-source electronic control system for low-field MRI

Every magnetic resonance imaging (MRI) device requires an electronic control system that handles pulse sequences and signal detection and processing. Here we provide details on the architecture and performance of MaRCoS, a MAgnetic Resonance COntrol System developed by an open international community of low-field MRI researchers. MaRCoS is inexpensive and can handle cycle-accurate sequences without hard length limitations, rapid bursts of events, and arbitrary waveforms. It can also be easily adapted to meet further specifications required by the various academic and private institutions participating in its development. We describe the MaRCoS hardware, firmware and software that enable all of the above, including a Python-based graphical user interface for pulse sequence implementation, data processing and image reconstruction.

physics.med-ph↗

Low-field electromagnet for a high-resolution MRI system

This paper presents the design and experimental characterization of a 1 T electromagnet tailored to meet the demands of a Magnetic Resonance Imaging (MRI) system conceived for spatial resolutions at the level of tens of microns. For high image quality, MRI requires an homogeneous magnetic field over the Field of View (FoV) where the sample is imaged. We measure the relative inhomogeneity of the field generated by our magnet to be well below 100 parts per million over a spherical FoV of 20 mm diameter, while strongly constraining fringe field lines to avoid interference with other devices. The magnet performance closely follows our expectations from numerical simulations in all the experimental tests carried out. Additionally, we present the solutions adopted for thermal management and the design of a mechanical structure to distribute the weight and integrate the platform to move the sample in and out of the magnet.

physics.ins-det↗