arXiv subjects

José Rafael Bordin

Publications and source records attributed to José Rafael Bordin.

30 records · Page 2Linked to original sources

arXiv2018

2D nanoporous membrane for cation removal from water: effects of ionic valence, membrane hydrophobicity and pore size

Using molecular dynamic simulations we show that single-layers of molybdenum disulfide (MoS$_2$) and graphene can effectively reject ions and allow high water permeability. Solutions of water and three cations with different valence (Na$^+$, Zn$^{2+}$ and Fe$^{3+}$) were investigated in the presence of the two types of membranes and the results indicate a high dependence of the ion rejection on the cation charge. The associative characteristic of ferric chloride leads to a high rate of ion rejection by both nanopores, while the monovalent sodium chloride induces lower rejection rates. Particularly, MoS$_2$ shows 100\% of Fe$^{3+}$ rejection for all pore sizes and applied pressures. On the other hand, the water permeation did not varies with the cation valence, having dependence only with the nanopore geometric and chemical characteristic. This study helps to understand the fluid transport through nanoporous membrane, essential for the development of new technologies for pollutants removal from water.

cond-mat.soft↗

arXiv2017

Distinct aggregation patterns and fluid porous phase in a 2D model for colloids with competitive interactions

In this paper we explore the self-assembly patterns in a two dimensional colloidal system using extensive Langevin Dynamics simulations. The pair potential proposed to model the competitive interaction have a short range length scale between first neighbors and a second characteristic length scale between third neighbors. We investigate how the temperature and colloidal density will affect the assembled morphologies. The potential shows aggregate patterns similar to observed in previous works, as clusters, stripes and porous phase. Nevertheless, we observe at high densities and temperatures a porous mesophase with a high mobility, which we name fluid porous phase, while at lower temperatures the porous structure is rigid. triangular packing was observed for the colloids and pores in both solid and fluid porous phases. Our results show that the porous structure is well defined for a large range of temperature and density, and that the fluid porous phase is a consequence of the competitive interaction and the random forces from the Langevin Dynamics.

cond-mat.soft↗

arXiv2017

Waterlike anomalies in a 2D core-softened potential

We investigate the structural, thermodynamic and dynamic behavior of of a two dimensional core-corona system using Langevin Dynamics simulations. The particles are modeled using a core-softened potential that exhibits waterlike anomalies for the 3D case. For quasi-2D systems we have observed previously a new region of structural anomaly. Now, our results show that a new region of structural, density and diffusion anomalies arises for the 2D system. Our findings indicates that while the anomalous region at lower densities observed is due the competition between the two length scales in the potential, the traditional mechanism, the higher densities anomalous region is related to changes in the particles conformation and a melting region.

cond-mat.soft↗

arXiv2016

Confinement effects on the properties of Janus dimers

Confinement has been suggested as a tool to tune the self-assembly properties of nanoparticles, surfactants, polymers and colloids. In this way, we explore the phase diagram of Janus nanoparticles using Molecular Dynamics simulations. The nanoparticle was modeled as a dimer made by one monomer that interacts by a standard Lennard Jones potential and another monomer that is modeled using a two-length scale shoulder potential. This specific design of nanoparticle exhibits in bulk distinct self-assembled structures and water-like diffusion anomaly. Our results indicate that besides the aggregates observed in bulk, new structures are observed under confinement. Also, the dynamic and thermodynamic behavior of the fluid phase are affected. The systems show a reentrant fluid phase and density anomaly. None of these two features were observed in bulk. Our results show that geometrical confinement leads to new structural, thermodynamical and dynamical behavior for this Janus nanoparticle.

cond-mat.soft↗

arXiv2016

Flow and structure of fluids in functionalized nanopores

We investigate through non-equilibrium Molecular Dynamics simulations the structure and flow of fluids in functionalized nanopores. The nanopores are modeled as cylindrical structures with solvophilic and solvophobic sites. Two fluids are modeled. The first is a standard Lennard Jones fluid. The second one is modeled with a isotropic two-length scale potential, which exhibits in bulk water-like anomalies. Our results indicates distinct dependence of the overall mass flux for each species of fluid with the number of solvophilic sites for different nanotubes radii. Also, the density and fluid structure are dependent from the nanotube radius and the solvophilic properties of the nanotube. This indicates that the presence of a second length scale in the fluid-fluid interaction will lead to distinct behavior. Also, our results shows that chemically functionalized nanotubes with different radius will have distinct nano-fluidic features. Our results are explained in the basis of the characteristic scale fluid properties and the effects of nanoconfinement.

cond-mat.soft↗

arXiv2016

Waterlike Features, Liquid-Crystal Phase and Self-Assembly in Janus Dumbbells

We use Molecular Dynamics simulations to explore the properties of dimmeric Janus nanoparticles. The nanoparticles are modeled as dumbbells. One kind of monomer interacts by a Lennard-Jones potential, while the other specie of monomer interacts though a two length scale potential. This specific two length scale potential do not present waterlike anomalies in bulk. However, our results shows that, when combined in a dimmer, the Janus nanoparticle will have waterlike anomalies. The self-assembly properties were also explored. We observe several kinds of micelles, and a liquid-crystal phase. This results indicates that is possible to create Janus nanoparticles with waterlike features using monomers without anomalous behavior. The anomalies and structures are explained with the two length scale potential characteristics.

cond-mat.soft↗

arXiv2015

Self-Assembly and Waterlike Anomalies in Janus Nanoparticles

We explore the pressure versus temperature phase diagram of dimeric Janus nanoparticles using Molecular Dynamics simulations. The nanoparticle was modeled as a dumbbells particle, and have one monomer that interacts by a standard Lennard Jones potential and another monomer that is modeled using a two-length scale shoulder potential. Monomeric and dimeric systems modeled by this shoulder potential show waterlike anomalies, and we investigate if a Janus nanoparticle composed by one anomalous monomer will exhibit anomalous behavior and self-assembly structures. The influence of the non-anomalous monomer in the dimeric system properties was explored. We show that the diffusion anomaly is maintained, while the density anomaly can disappear depending on the non-anomalous monomer characteristics. As well, the self-assembled structures are affected. Our results are discussed in the basis of the distinct monomer-monomer interactions and on the two-length scale fluid characteristics.

cond-mat.soft↗

arXiv2015

Effects of nanopore and fluid structure on anomalies and phase transitions of confined core-softened fluids

We use Molecular Dynamics simulations to study how the nanopore and the fluid structures affects the dynamic, thermodynamic and structural properties of a confined anomalous fluid. The fluid is modeled using an effective pair potential derived from the ST4 atomistic model for water. This system exhibits density, structural and dynamical anomalies and the vapor-liquid and liquid-liquid critical points similar to the quantities observed in bulk water. The confinement is modeled both by smooth and structured walls. The temperatures of extremum density and diffusion for the confined fluid show a shift to lower values while the pressures move to higher amounts for both smooth and structured confinement. In the case of smooth walls, the critical points and the limit between fluid and amorphous phases show a non-monotonic change in the temperatures and pressures when the the nanopore size is increase. In the case of structured walls the pressures and temperatures of the critical points varies monotonicaly with the porous size. Our results are explained on basis of the competition between the different length scales of the fluid and the wall-fluid interaction.

cond-mat.soft↗

arXiv2014

New structural anomaly induced by nanoconfinement

We explore the structural properties of anomalous fluids confined in a nanopore using Molecular Dynamics simulations. The fluid is modeled by core-softened (CS) potentials that have a repulsive shoulder and an attractive well at a further distance. Changing the attractive well depth of the fluid-fluid interaction potential, we studied the behavior of the anomalies in the translational order parameter $t$ and excess entropy $s_{ex}$ for the particles near to the nanopore wall (contact layer) for systems with two or three layers of particles. When the attractive well of the CS potential is shallow, the systems present a three to two layers transition and, additionally to the usual structural anomaly, a new anomalous region in $t$ and $s_{ex}$. For attractive well deep enough, the systems change from three layers to a bulk-like profile and just one region of anomaly in $t$ and $s_{ex}$ is observed. Our results are discussed in the basis of the fluid-fluid and fluid-surface interactions.

cond-mat.soft↗

arXiv2014

High pressure induced phase transition and superdiffusion in anomalous fluid confined in flexible nanopores

The behavior of a confined spherical symmetric anomalous fluid under high external pressure was studied with Molecular Dynamics simulations. The fluid is modeled by a ore-softened potential with two characteristic length scales, which in bulk reproduces the dynamical, thermodynamical and structural anomalous behavior observed for water and other anomalous fluids. Our findings show that this system has a superdiffusion regime for sufficient high pressure and low temperature. As well, our results indicate hat this superdiffusive regime is strongly related with the fluid structural properties and the superdiffusion to diffusion transition is a first order phase transition. We show how the simulation time and statistics are important to obtain the correct dynamical behavior of the confined fluid. Our results are discussed in the basis of the two length scales.

cond-mat.soft↗

arXiv2013

Distinct dynamical and structural properties of a core-softened fluid when confined between fluctuating and fixed walls

We study the influence of mobility of the confining media in the structural and dynamical properties of a core-softened fluid under confinement. The fluid is modeled using a two-length scale potential, which reproduces in bulk the anomalous behavior observed in water. We perform simulations in the $NVT$ ensemble with fixed flat walls and in the $NpT$ ensemble using a fluctuating wall control of pressure to study how the fluid behavior is affected by fixed and non-fixed walls. Our results indicate that the fluid dynamical and structural properties are strongly affected by the wall mobility. The distinct observed behavior are explained in the framework of the two length scale potential.

cond-mat.soft↗

arXiv2012

Ion fluxes through nano-pores and transmembrane channels

We introduce an implicit solvent Molecular Dynamics approach for calculating ionic fluxes through narrow nano-pores and transmembrane channels. The method relies on a dual-control- volume grand-canonical molecular dynamics (DCV-GCMD) simulation and the analytical solution for the electrostatic potential inside a cylindrical nano-pore recently obtained by Levin [Europhys. Lett., 76, 163 (2006)]. The theory is used to calculate the ionic fluxes through an artificial trans-membrane c hannel which mimics the antibacterial gramicidin A channel. Both current-voltage and current-concentration relations are calculated under various experimental conditions. We show that our results are comparable to the characteristics associated to the gramicidin A pore, specially the existence of two binding sites inside the pore and the observed saturation in the current-concentration profiles.

cond-mat.soft↗