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Jose Dolz

Publications and source records attributed to Jose Dolz.

At least 55 records · Page 3Linked to original sources
arXiv2024

Pay Attention to Your Neighbours: Training-Free Open-Vocabulary Semantic Segmentation

Despite the significant progress in deep learning for dense visual recognition problems, such as semantic segmentation, traditional methods are constrained by fixed class sets. Meanwhile, vision-language foundation models, such as CLIP, have showcased remarkable effectiveness in numerous zero-shot image-level tasks, owing to their robust generalizability. Recently, a body of work has investigated utilizing these models in open-vocabulary semantic segmentation (OVSS). However, existing approaches often rely on impractical supervised pre-training or access to additional pre-trained networks. In this work, we propose a strong baseline for training-free OVSS, termed Neighbour-Aware CLIP (NACLIP), representing a straightforward adaptation of CLIP tailored for this scenario. Our method enforces localization of patches in the self-attention of CLIP's vision transformer which, despite being crucial for dense prediction tasks, has been overlooked in the OVSS literature. By incorporating design choices favouring segmentation, our approach significantly improves performance without requiring additional data, auxiliary pre-trained networks, or extensive hyperparameter tuning, making it highly practical for real-world applications. Experiments are performed on 8 popular semantic segmentation benchmarks, yielding state-of-the-art performance on most scenarios. Our code is publicly available at https://github.com/sinahmr/NACLIP.

cs.CV↗
arXiv2024

Few-shot Adaptation of Medical Vision-Language Models

Integrating image and text data through multi-modal learning has emerged as a new approach in medical imaging research, following its successful deployment in computer vision. While considerable efforts have been dedicated to establishing medical foundation models and their zero-shot transfer to downstream tasks, the popular few-shot setting remains relatively unexplored. Following on from the currently strong emergence of this setting in computer vision, we introduce the first structured benchmark for adapting medical vision-language models (VLMs) in a strict few-shot regime and investigate various adaptation strategies commonly used in the context of natural images. Furthermore, we evaluate a simple generalization of the linear-probe adaptation baseline, which seeks an optimal blending of the visual prototypes and text embeddings via learnable class-wise multipliers. Surprisingly, such a text-informed linear probe yields competitive performances in comparison to convoluted prompt-learning and adapter-based strategies, while running considerably faster and accommodating the black-box setting. Our extensive experiments span three different medical modalities and specialized foundation models, nine downstream tasks, and several state-of-the-art few-shot adaptation methods. We made our benchmark and code publicly available to trigger further developments in this emergent subject: \url{https://github.com/FereshteShakeri/few-shot-MedVLMs}.

cs.CV↗
arXiv2024

Harmonizing Flows: Leveraging normalizing flows for unsupervised and source-free MRI harmonization

Lack of standardization and various intrinsic parameters for magnetic resonance (MR) image acquisition results in heterogeneous images across different sites and devices, which adversely affects the generalization of deep neural networks. To alleviate this issue, this work proposes a novel unsupervised harmonization framework that leverages normalizing flows to align MR images, thereby emulating the distribution of a source domain. The proposed strategy comprises three key steps. Initially, a normalizing flow network is trained to capture the distribution characteristics of the source domain. Then, we train a shallow harmonizer network to reconstruct images from the source domain via their augmented counterparts. Finally, during inference, the harmonizer network is updated to ensure that the output images conform to the learned source domain distribution, as modeled by the normalizing flow network. Our approach, which is unsupervised, source-free, and task-agnostic is assessed in the context of both adults and neonatal cross-domain brain MRI segmentation, as well as neonatal brain age estimation, demonstrating its generalizability across tasks and population demographics. The results underscore its superior performance compared to existing methodologies. The code is available at https://github.com/farzad-bz/Harmonizing-Flows

cs.CV↗
arXiv2024

Robust Calibration of Large Vision-Language Adapters

This paper addresses the critical issue of miscalibration in CLIP-based model adaptation, particularly in the challenging scenario of out-of-distribution (OOD) samples, which has been overlooked in the existing literature on CLIP adaptation. We empirically demonstrate that popular CLIP adaptation approaches, such as Adapters, Prompt Learning, and Test-Time Adaptation, substantially degrade the calibration capabilities of the zero-shot baseline in the presence of distributional drift. We identify the increase in logit ranges as the underlying cause of miscalibration of CLIP adaptation methods, contrasting with previous work on calibrating fully-supervised models. Motivated by these observations, we present a simple and model-agnostic solution to mitigate miscalibration, by scaling the logit range of each sample to its zero-shot prediction logits. We explore three different alternatives to achieve this, which can be either integrated during adaptation or directly used at inference time. Comprehensive experiments on popular OOD classification benchmarks demonstrate the effectiveness of the proposed approaches in mitigating miscalibration while maintaining discriminative performance, whose improvements are consistent across the three families of these increasingly popular approaches. The code is publicly available at: https://github.com/Bala93/CLIPCalib

cs.CV↗
arXiv2024

LP++: A Surprisingly Strong Linear Probe for Few-Shot CLIP

In a recent, strongly emergent literature on few-shot CLIP adaptation, Linear Probe (LP) has been often reported as a weak baseline. This has motivated intensive research building convoluted prompt learning or feature adaptation strategies. In this work, we propose and examine from convex-optimization perspectives a generalization of the standard LP baseline, in which the linear classifier weights are learnable functions of the text embedding, with class-wise multipliers blending image and text knowledge. As our objective function depends on two types of variables, i.e., the class visual prototypes and the learnable blending parameters, we propose a computationally efficient block coordinate Majorize-Minimize (MM) descent algorithm. In our full-batch MM optimizer, which we coin LP++, step sizes are implicit, unlike standard gradient descent practices where learning rates are intensively searched over validation sets. By examining the mathematical properties of our loss (e.g., Lipschitz gradient continuity), we build majorizing functions yielding data-driven learning rates and derive approximations of the loss's minima, which provide data-informed initialization of the variables. Our image-language objective function, along with these non-trivial optimization insights and ingredients, yields, surprisingly, highly competitive few-shot CLIP performances. Furthermore, LP++ operates in black-box, relaxes intensive validation searches for the optimization hyper-parameters, and runs orders-of-magnitudes faster than state-of-the-art few-shot CLIP adaptation methods. Our code is available at: \url{https://github.com/FereshteShakeri/FewShot-CLIP-Strong-Baseline.git}.

cs.CV↗
arXiv2024

A Closer Look at the Few-Shot Adaptation of Large Vision-Language Models

Efficient transfer learning (ETL) is receiving increasing attention to adapt large pre-trained language-vision models on downstream tasks with a few labeled samples. While significant progress has been made, we reveal that state-of-the-art ETL approaches exhibit strong performance only in narrowly-defined experimental setups, and with a careful adjustment of hyperparameters based on a large corpus of labeled samples. In particular, we make two interesting, and surprising empirical observations. First, to outperform a simple Linear Probing baseline, these methods require to optimize their hyper-parameters on each target task. And second, they typically underperform -- sometimes dramatically -- standard zero-shot predictions in the presence of distributional drifts. Motivated by the unrealistic assumptions made in the existing literature, i.e., access to a large validation set and case-specific grid-search for optimal hyperparameters, we propose a novel approach that meets the requirements of real-world scenarios. More concretely, we introduce a CLass-Adaptive linear Probe (CLAP) objective, whose balancing term is optimized via an adaptation of the general Augmented Lagrangian method tailored to this context. We comprehensively evaluate CLAP on a broad span of datasets and scenarios, demonstrating that it consistently outperforms SoTA approaches, while yet being a much more efficient alternative.

cs.CV↗
arXiv2024

Do not trust what you trust: Miscalibration in Semi-supervised Learning

State-of-the-art semi-supervised learning (SSL) approaches rely on highly confident predictions to serve as pseudo-labels that guide the training on unlabeled samples. An inherent drawback of this strategy stems from the quality of the uncertainty estimates, as pseudo-labels are filtered only based on their degree of uncertainty, regardless of the correctness of their predictions. Thus, assessing and enhancing the uncertainty of network predictions is of paramount importance in the pseudo-labeling process. In this work, we empirically demonstrate that SSL methods based on pseudo-labels are significantly miscalibrated, and formally demonstrate the minimization of the min-entropy, a lower bound of the Shannon entropy, as a potential cause for miscalibration. To alleviate this issue, we integrate a simple penalty term, which enforces the logit distances of the predictions on unlabeled samples to remain low, preventing the network predictions to become overconfident. Comprehensive experiments on a variety of SSL image classification benchmarks demonstrate that the proposed solution systematically improves the calibration performance of relevant SSL models, while also enhancing their discriminative power, being an appealing addition to tackle SSL tasks.

cs.LG↗
arXiv2024

Class and Region-Adaptive Constraints for Network Calibration

In this work, we present a novel approach to calibrate segmentation networks that considers the inherent challenges posed by different categories and object regions. In particular, we present a formulation that integrates class and region-wise constraints into the learning objective, with multiple penalty weights to account for class and region differences. Finding the optimal penalty weights manually, however, might be unfeasible, and potentially hinder the optimization process. To overcome this limitation, we propose an approach based on Class and Region-Adaptive constraints (CRaC), which allows to learn the class and region-wise penalty weights during training. CRaC is based on a general Augmented Lagrangian method, a well-established technique in constrained optimization. Experimental results on two popular segmentation benchmarks, and two well-known segmentation networks, demonstrate the superiority of CRaC compared to existing approaches. The code is available at: https://github.com/Bala93/CRac/

cs.CV↗
arXiv2024

Calibrating Segmentation Networks with Margin-based Label Smoothing

Despite the undeniable progress in visual recognition tasks fueled by deep neural networks, there exists recent evidence showing that these models are poorly calibrated, resulting in over-confident predictions. The standard practices of minimizing the cross entropy loss during training promote the predicted softmax probabilities to match the one-hot label assignments. Nevertheless, this yields a pre-softmax activation of the correct class that is significantly larger than the remaining activations, which exacerbates the miscalibration problem. Recent observations from the classification literature suggest that loss functions that embed implicit or explicit maximization of the entropy of predictions yield state-of-the-art calibration performances. Despite these findings, the impact of these losses in the relevant task of calibrating medical image segmentation networks remains unexplored. In this work, we provide a unifying constrained-optimization perspective of current state-of-the-art calibration losses. Specifically, these losses could be viewed as approximations of a linear penalty (or a Lagrangian term) imposing equality constraints on logit distances. This points to an important limitation of such underlying equality constraints, whose ensuing gradients constantly push towards a non-informative solution, which might prevent from reaching the best compromise between the discriminative performance and calibration of the model during gradient-based optimization. Following our observations, we propose a simple and flexible generalization based on inequality constraints, which imposes a controllable margin on logit distances. Comprehensive experiments on a variety of public medical image segmentation benchmarks demonstrate that our method sets novel state-of-the-art results on these tasks in terms of network calibration, whereas the discriminative performance is also improved.

cs.CV↗
arXiv2024

Exploring the Transferability of a Foundation Model for Fundus Images: Application to Hypertensive Retinopathy

Using deep learning models pre-trained on Imagenet is the traditional solution for medical image classification to deal with data scarcity. Nevertheless, relevant literature supports that this strategy may offer limited gains due to the high dissimilarity between domains. Currently, the paradigm of adapting domain-specialized foundation models is proving to be a promising alternative. However, how to perform such knowledge transfer, and the benefits and limitations it presents, are under study. The CGI-HRDC challenge for Hypertensive Retinopathy diagnosis on fundus images introduces an appealing opportunity to evaluate the transferability of a recently released vision-language foundation model of the retina, FLAIR. In this work, we explore the potential of using FLAIR features as starting point for fundus image classification, and we compare its performance with regard to Imagenet initialization on two popular transfer learning methods: Linear Probing (LP) and Fine-Tuning (FP). Our empirical observations suggest that, in any case, the use of the traditional strategy provides performance gains. In contrast, direct transferability from FLAIR model allows gains of 2.5%. When fine-tuning the whole network, the performance gap increases up to 4%. In this case, we show that avoiding feature deterioration via LP initialization of the classifier allows the best re-use of the rich pre-trained features. Although direct transferability using LP still offers limited performance, we believe that foundation models such as FLAIR will drive the evolution of deep-learning-based fundus image analysis.

cs.CV↗
arXiv2024

Neighbor-Aware Calibration of Segmentation Networks with Penalty-Based Constraints

Ensuring reliable confidence scores from deep neural networks is of paramount significance in critical decision-making systems, particularly in real-world domains such as healthcare. Recent literature on calibrating deep segmentation networks has resulted in substantial progress. Nevertheless, these approaches are strongly inspired by the advancements in classification tasks, and thus their uncertainty is usually modeled by leveraging the information of individual pixels, disregarding the local structure of the object of interest. Indeed, only the recent Spatially Varying Label Smoothing (SVLS) approach considers pixel spatial relationships across classes, by softening the pixel label assignments with a discrete spatial Gaussian kernel. In this work, we first present a constrained optimization perspective of SVLS and demonstrate that it enforces an implicit constraint on soft class proportions of surrounding pixels. Furthermore, our analysis shows that SVLS lacks a mechanism to balance the contribution of the constraint with the primary objective, potentially hindering the optimization process. Based on these observations, we propose NACL (Neighbor Aware CaLibration), a principled and simple solution based on equality constraints on the logit values, which enables to control explicitly both the enforced constraint and the weight of the penalty, offering more flexibility. Comprehensive experiments on a wide variety of well-known segmentation benchmarks demonstrate the superior calibration performance of the proposed approach, without affecting its discriminative power. Furthermore, ablation studies empirically show the model agnostic nature of our approach, which can be used to train a wide span of deep segmentation networks.

cs.CV↗
arXiv2024

Trust your neighbours: Penalty-based constraints for model calibration

Ensuring reliable confidence scores from deep networks is of pivotal importance in critical decision-making systems, notably in the medical domain. While recent literature on calibrating deep segmentation networks has led to significant progress, their uncertainty is usually modeled by leveraging the information of individual pixels, which disregards the local structure of the object of interest. In particular, only the recent Spatially Varying Label Smoothing (SVLS) approach addresses this issue by softening the pixel label assignments with a discrete spatial Gaussian kernel. In this work, we first present a constrained optimization perspective of SVLS and demonstrate that it enforces an implicit constraint on soft class proportions of surrounding pixels. Furthermore, our analysis shows that SVLS lacks a mechanism to balance the contribution of the constraint with the primary objective, potentially hindering the optimization process. Based on these observations, we propose a principled and simple solution based on equality constraints on the logit values, which enables to control explicitly both the enforced constraint and the weight of the penalty, offering more flexibility. Comprehensive experiments on a variety of well-known segmentation benchmarks demonstrate the superior performance of the proposed approach.

cs.CV↗
arXiv2024

Prompting classes: Exploring the Power of Prompt Class Learning in Weakly Supervised Semantic Segmentation

Recently, CLIP-based approaches have exhibited remarkable performance on generalization and few-shot learning tasks, fueled by the power of contrastive language-vision pre-training. In particular, prompt tuning has emerged as an effective strategy to adapt the pre-trained language-vision models to downstream tasks by employing task-related textual tokens. Motivated by this progress, in this work we question whether other fundamental problems, such as weakly supervised semantic segmentation (WSSS), can benefit from prompt tuning. Our findings reveal two interesting observations that shed light on the impact of prompt tuning on WSSS. First, modifying only the class token of the text prompt results in a greater impact on the Class Activation Map (CAM), compared to arguably more complex strategies that optimize the context. And second, the class token associated with the image ground truth does not necessarily correspond to the category that yields the best CAM. Motivated by these observations, we introduce a novel approach based on a PrOmpt cLass lEarning (POLE) strategy. Through extensive experiments we demonstrate that our simple, yet efficient approach achieves SOTA performance in a well-known WSSS benchmark. These results highlight not only the benefits of language-vision models in WSSS but also the potential of prompt learning for this problem. The code is available at https://github.com/rB080/WSS_POLE.

cs.CV↗
arXiv2023

Do We Really Need Dice? The Hidden Region-Size Biases of Segmentation Losses

Most segmentation losses are arguably variants of the Cross-Entropy (CE) or Dice losses. On the surface, these two categories of losses seem unrelated, and there is no clear consensus as to which category is a better choice, with varying performances for each across different benchmarks and applications. Furthermore, it is widely argued within the medical-imaging community that Dice and CE are complementary, which has motivated the use of compound CE-Dice losses. In this work, we provide a theoretical analysis, which shows that CE and Dice share a much deeper connection than previously thought. First, we show that, from a constrained-optimization perspective, they both decompose into two components, i.e., a similar ground-truth matching term, which pushes the predicted foreground regions towards the ground-truth, and a region-size penalty term imposing different biases on the size of the predicted regions. Then, we provide bound relationships and an information-theoretic analysis, which uncover hidden region-size biases: Dice has an intrinsic bias towards specific extremely imbalanced solutions, whereas CE implicitly encourages the ground-truth region proportions. Our theoretical results explain the wide experimental evidence in the medical-imaging literature, whereby Dice losses bring improvements for imbalanced segmentation. Based on our theoretical analysis, we propose a principled and simple solution, which enables to control explicitly the region-size bias. The proposed method integrates CE with explicit terms based on L1 or the KL divergence, which encourage segmenting region proportions to match target class proportions, thereby mitigating class imbalance but without losing generality. Comprehensive experiments and ablation studies over different losses and applications validate our theoretical analysis, as well as the effectiveness of explicit and simple region-size terms.

cs.CV↗
arXiv2023

Anatomically-aware Uncertainty for Semi-supervised Image Segmentation

Semi-supervised learning relaxes the need of large pixel-wise labeled datasets for image segmentation by leveraging unlabeled data. A prominent way to exploit unlabeled data is to regularize model predictions. Since the predictions of unlabeled data can be unreliable, uncertainty-aware schemes are typically employed to gradually learn from meaningful and reliable predictions. Uncertainty estimation methods, however, rely on multiple inferences from the model predictions that must be computed for each training step, which is computationally expensive. Moreover, these uncertainty maps capture pixel-wise disparities and do not consider global information. This work proposes a novel method to estimate segmentation uncertainty by leveraging global information from the segmentation masks. More precisely, an anatomically-aware representation is first learnt to model the available segmentation masks. The learnt representation thereupon maps the prediction of a new segmentation into an anatomically-plausible segmentation. The deviation from the plausible segmentation aids in estimating the underlying pixel-level uncertainty in order to further guide the segmentation network. The proposed method consequently estimates the uncertainty using a single inference from our representation, thereby reducing the total computation. We evaluate our method on two publicly available segmentation datasets of left atria in cardiac MRIs and of multiple organs in abdominal CTs. Our anatomically-aware method improves the segmentation accuracy over the state-of-the-art semi-supervised methods in terms of two commonly used evaluation metrics.

cs.CV↗
arXiv2023

Parametric Information Maximization for Generalized Category Discovery

We introduce a Parametric Information Maximization (PIM) model for the Generalized Category Discovery (GCD) problem. Specifically, we propose a bi-level optimization formulation, which explores a parameterized family of objective functions, each evaluating a weighted mutual information between the features and the latent labels, subject to supervision constraints from the labeled samples. Our formulation mitigates the class-balance bias encoded in standard information maximization approaches, thereby handling effectively both short-tailed and long-tailed data sets. We report extensive experiments and comparisons demonstrating that our PIM model consistently sets new state-of-the-art performances in GCD across six different datasets, more so when dealing with challenging fine-grained problems.

cs.CV↗
arXiv2023

MoP-CLIP: A Mixture of Prompt-Tuned CLIP Models for Domain Incremental Learning

Despite the recent progress in incremental learning, addressing catastrophic forgetting under distributional drift is still an open and important problem. Indeed, while state-of-the-art domain incremental learning (DIL) methods perform satisfactorily within known domains, their performance largely degrades in the presence of novel domains. This limitation hampers their generalizability, and restricts their scalability to more realistic settings where train and test data are drawn from different distributions. To address these limitations, we present a novel DIL approach based on a mixture of prompt-tuned CLIP models (MoP-CLIP), which generalizes the paradigm of S-Prompting to handle both in-distribution and out-of-distribution data at inference. In particular, at the training stage we model the features distribution of every class in each domain, learning individual text and visual prompts to adapt to a given domain. At inference, the learned distributions allow us to identify whether a given test sample belongs to a known domain, selecting the correct prompt for the classification task, or from an unseen domain, leveraging a mixture of the prompt-tuned CLIP models. Our empirical evaluation reveals the poor performance of existing DIL methods under domain shift, and suggests that the proposed MoP-CLIP performs competitively in the standard DIL settings while outperforming state-of-the-art methods in OOD scenarios. These results demonstrate the superiority of MoP-CLIP, offering a robust and general solution to the problem of domain incremental learning.

cs.CV↗
arXiv2023

The Devil is in the Margin: Margin-based Label Smoothing for Network Calibration

In spite of the dominant performances of deep neural networks, recent works have shown that they are poorly calibrated, resulting in over-confident predictions. Miscalibration can be exacerbated by overfitting due to the minimization of the cross-entropy during training, as it promotes the predicted softmax probabilities to match the one-hot label assignments. This yields a pre-softmax activation of the correct class that is significantly larger than the remaining activations. Recent evidence from the literature suggests that loss functions that embed implicit or explicit maximization of the entropy of predictions yield state-of-the-art calibration performances. We provide a unifying constrained-optimization perspective of current state-of-the-art calibration losses. Specifically, these losses could be viewed as approximations of a linear penalty (or a Lagrangian) imposing equality constraints on logit distances. This points to an important limitation of such underlying equality constraints, whose ensuing gradients constantly push towards a non-informative solution, which might prevent from reaching the best compromise between the discriminative performance and calibration of the model during gradient-based optimization. Following our observations, we propose a simple and flexible generalization based on inequality constraints, which imposes a controllable margin on logit distances. Comprehensive experiments on a variety of image classification, semantic segmentation and NLP benchmarks demonstrate that our method sets novel state-of-the-art results on these tasks in terms of network calibration, without affecting the discriminative performance. The code is available at https://github.com/by-liu/MbLS .

cs.CV↗