arXiv subjects

Joseph Harrington

Publications and source records attributed to Joseph Harrington.

At least 37 records · Page 2Linked to original sources

arXiv2021

An Open-Source Bayesian Atmospheric Radiative Transfer (BART) Code: I. Design, Tests, and Application to Exoplanet HD 189733 b

We present the open-source Bayesian Atmospheric Radiative Transfer (BART) retrieval package, which produces estimates and uncertainties for an atmosphere's thermal profile and chemical abundances from observations. Several BART components are also stand-alone packages, including the parallel Multi-Core Markov chain Monte Carlo (MC3), which implements several Bayesian samplers; a line-by-line radiative-transfer model, transit; a code that calculates Thermochemical Equilibrium Abundances, TEA; and a test suite for verifying radiative-transfer and retrieval codes, BARTTest. The codes are in Python and C. BART and TEA are under a Reproducible Research (RR) license, which requires reviewed-paper authors to publish a compendium of all inputs, codes, and outputs supporting the paper's scientific claims. BART and TEA produce the compendium's content. Otherwise, these codes are under permissive open-source terms, as are MC3 and BARTTest, for any purpose. This paper presents an overview of the code, BARTTest, and an application to eclipse data for exoplanet HD 189733 b. Appendices address RR methodology for accelerating science, a reporting checklist for retrieval papers, the spectral resolution required for synthetic tests, and a derivation of the effective sample size required to estimate any Bayesian posterior distribution to a given precision, which determines how many iterations to run. Paper II, by Cubillos et al., presents the underlying radiative-transfer scheme and an application to transit data for exoplanet HAT-P-11b. Paper III, by Blecic et al., discusses the initialization and post-processing routines, with an application to eclipse data for exoplanet WASP-43b. We invite the community to use and improve BART and its components at http://GitHub.com/ExOSPORTS/BART/.

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arXiv2021

An open-source Bayesian atmospheric radiative transfer (BART) code: III. Initialization, atmospheric profile generator, post-processing routines, and application to exoplanet WASP-43b

This and companion papers by Harrington et al. 2021, submitted and Cubillos et al. 2021, submitted describe an open-source retrieval framework, Bayesian Atmospheric Radiative Transfer (BART), available to the community under the reproducible-research license via https://github.com/exosports/BART . BART is a radiative-transfer code (transit, https://github.com/exosports/transit , Rojo 2009, 2009ASPC..420..321R), initialized by the Thermochemical Equilibrium Abundances (TEA, https://github.com/dzesmin/TEA , Blecic et al. 2016, arXiv:1505.06392) code, and driven through the parameter phase space by a differential-evolution Markov-chain Monte Carlo (MC3, https://github.com/pcubillos/mc3 , Cubillos et al. 2017, arXiv:1610.01336) sampler. In this paper we give a brief description of the framework, and its modules that can be used separately for other scientific purposes; outline the retrieval analysis flow; present the initialization routines, describing in detail the atmospheric profile generator and the temperature and species parameterizations; and specify the post-processing routines and outputs, concentrating on the spectrum band integrator, the best-fit model selection, and the contribution functions. We also present an atmospheric analysis of WASP-43b secondary eclipse data obtained from space- and ground-based observations. We compare our results with the results from the literature, and investigate how the inclusion of additional opacity sources influence the best-fit model.

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arXiv2020

Identification and Mitigation of a Vibrational Telescope Systematic with Application to Spitzer

We observed Proxima Centauri with the Spitzer Space Telescope InfraRed Array Camera (IRAC) five times in 2016 and 2017 to search for transits of Proxima Centauri b. Following standard analysis procedures, we found three asymmetric, transit-like events that are now understood to be vibrational systematics. This systematic is correlated with the width of the point-response function (PRF), which we measure with rotated and non-rotated Gaussian fits with respect to the detecor array. We show that the systematic can be removed with a novel application of an adaptive elliptical-aperture photometry technique, and compare the performance of this technique with fixed and variable circular-aperture photometry, using both BiLinearly Interpolated Subpixel Sensitivity (BLISS) maps and non-binned Pixel-Level Decorrelation (PLD). With BLISS maps, elliptical photometry results in a lower standard deviation of normalized residuals, and reduced or similar correlated noise when compared to circular apertures. PLD prefers variable, circular apertures, but generally results in more correlated noise than BLISS. This vibrational effect is likely present in other telescopes and Spitzer observations, where correction could improve results. Our elliptical apertures can be applied to any photometry observations, and may be even more effective when applied to more circular PRFs than Spitzer's.

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arXiv2019

The Growing Importance of a Tech Savvy Astronomy and Astrophysics Workforce

Fundamental coding and software development skills are increasingly necessary for success in nearly every aspect of astronomical and astrophysical research as large surveys and high resolution simulations become the norm. However, professional training in these skills is inaccessible or impractical for many members of our community. Students and professionals alike have been expected to acquire these skills on their own, apart from formal classroom curriculum or on-the-job training. Despite the recognized importance of these skills, there is little opportunity to develop them - even for interested researchers. To ensure a workforce capable of taking advantage of the computational resources and the large volumes of data coming in the next decade, we must identify and support ways to make software development training widely accessible to community members, regardless of affiliation or career level. To develop and sustain a technology capable astronomical and astrophysical workforce, we recommend that agencies make funding and other resources available in order to encourage, support and, in some cases, require progress on necessary training, infrastructure and policies. In this white paper, we focus on recommendations for how funding agencies can lead in the promotion of activities to support the astronomy and astrophysical workforce in the 2020s.

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arXiv2019

Astro2020 Project White Paper: The Cosmic Accelerometer

We propose an experiment, the Cosmic Accelerometer, designed to yield velocity precision of $\leq 1$ cm/s with measurement stability over years to decades. The first-phase Cosmic Accelerometer, which is at the scale of the Astro2020 Small programs, will be ideal for precision radial velocity measurements of terrestrial exoplanets in the Habitable Zone of Sun-like stars. At the same time, this experiment will serve as the technical pathfinder and facility core for a second-phase larger facility at the Medium scale, which can provide a significant detection of cosmological redshift drift on a 6-year timescale. This larger facility will naturally provide further detection/study of Earth twin planet systems as part of its external calibration process. This experiment is fundamentally enabled by a novel low-cost telescope technology called PolyOculus, which harnesses recent advances in commercial off the shelf equipment (telescopes, CCD cameras, and control computers) combined with a novel optical architecture to produce telescope collecting areas equivalent to standard telescopes with large mirror diameters. Combining a PolyOculus array with an actively-stabilized high-precision radial velocity spectrograph provides a unique facility with novel calibration features to achieve the performance requirements for the Cosmic Accelerometer.

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arXiv2019

Astro2020 Project White Paper: PolyOculus -- Low-cost Spectroscopy for the Community

As astronomy moves into the era of large-scale time-domain surveys, we are seeing a flood of new transient and variable sources which will reach biblical proportions with the advent of LSST. A key strategic challenge for astronomy in this era is the lack of suitable spectroscopic followup facilities. In response to this need, we have developed the PolyOculus approach for producing large-area-equivalent telescopes by using fiber optics to link modules of multiple semi-autonomous, small, inexpensive, commercial-off-the-shelf telescopes. Crucially, this scalable design has construction costs which are $>10x$ lower than equivalent traditional large-area telescopes. In addition, PolyOculus is inherently highly automated and well-suited for remote operations. Development of this technology will enable the expansion of major research efforts in the LSST era to a host of smaller universities and colleges, including primarily-undergraduate institutions, for budgets consistent with their educational expenditures on similar facilities. We propose to develop and deploy a 1.6-m prototype demonstrator at the Mt. Laguna Observatory in California, followed by a full-scale 5-meter-class PolyOculus facility for linkage to existing and upcoming time-domain surveys.

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arXiv2019

Astro2020 APC White Paper: Elevating the Role of Software as a Product of the Research Enterprise

Software is a critical part of modern research, and yet there are insufficient mechanisms in the scholarly ecosystem to acknowledge, cite, and measure the impact of research software. The majority of academic fields rely on a one-dimensional credit model whereby academic articles (and their associated citations) are the dominant factor in the success of a researcher's career. In the petabyte era of astronomical science, citing software and measuring its impact enables academia to retain and reward researchers that make significant software contributions. These highly skilled researchers must be retained to maximize the scientific return from petabyte-scale datasets. Evolving beyond the one-dimensional credit model requires overcoming several key challenges, including the current scholarly ecosystem and scientific culture issues. This white paper will present these challenges and suggest practical solutions for elevating the role of software as a product of the research enterprise.

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arXiv2019

Jupiter's Atmospheric Variability from Long-Term Ground-based Observations at 5 microns

Jupiter's banded structure undergoes strong temporal variations, changing the visible and infrared appearance of the belts and zones in a complex and turbulent way due to physical processes that are not yet understood. In this study we use ground-based 5-$μ$m infrared data captured between 1984 and 2018 by 8 different instruments mounted on the Infrared Telescope Facility in Hawai'i and on the Very Large Telescope in Chile to analyze and characterize the long-term variability of Jupiter's cloud-forming region at the 1-4 bar pressure level. The data show a large temporal variability mainly at the equatorial and tropical latitudes, with a smaller temporal variability at mid-latitudes. We also compare the 5-$μ$m-bright and -dark regions with the locations of the visible zones and belts and we find that these regions are not always co-located, specially in the southern hemisphere. We also present Lomb-Scargle and Wavelet Transform analyzes in order to look for possible periodicities of the brightness changes that could help us understand their origin and predict future events. We see that some of these variations occur periodically in time intervals of 4-8 years. The reasons of these time intervals are not understood and we explore potential connections to both convective processes in the deeper weather layer and dynamical processes in the upper troposphere and stratosphere. Finally we perform a Principal Component analysis to reveal a clear anticorrelation on the 5-$μ$m brightness changes between the North Equatorial Belt and the South Equatorial Belt, suggesting a possible connection between the changes in these belts.

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arXiv2019

Proxima Centauri b is not a transiting exoplanet

We report Spitzer Space Telescope observations during predicted transits of the exoplanet Proxima Centauri b. As the nearest terrestrial habitable-zone planet we will ever discover, any potential transit of Proxima b would place strong constraints on its radius, bulk density, and atmosphere. Subsequent transmission spectroscopy and secondary-eclipse measurements could then probe the atmospheric chemistry, physical processes, and orbit, including a search for biosignatures. However, our photometric results rule out planetary transits at the 200~ppm level at 4.5$~μm$, yielding a 3$σ$ upper radius limit of 0.4~$R_\rm{\oplus}$ (Earth radii). Previous claims of possible transits from optical ground- and space-based photometry were likely correlated noise in the data from Proxima Centauri's frequent flaring. Follow-up observations should focus on planetary radio emission, phase curves, and direct imaging. Our study indicates dramatically reduced stellar activity at near-to-mid infrared wavelengths, compared to the optical. Proxima b is an ideal target for space-based infrared telescopes, if their instruments can be configured to handle Proxima's brightness.

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arXiv2018

The Transiting Exoplanet Community Early Release Science Program for JWST

The James Webb Space Telescope (JWST) presents the opportunity to transform our understanding of planets and the origins of life by revealing the atmospheric compositions, structures, and dynamics of transiting exoplanets in unprecedented detail. However, the high-precision, time-series observations required for such investigations have unique technical challenges, and prior experience with other facilities indicates that there will be a steep learning curve when JWST becomes operational. In this paper we describe the science objectives and detailed plans of the Transiting Exoplanet Community Early Release Science (ERS) Program, which is a recently approved program for JWST observations early in Cycle 1. The goal of this project, for which the obtained data will have no exclusive access period, is to accelerate the acquisition and diffusion of technical expertise for transiting exoplanet observations with JWST, while also providing a compelling set of representative datasets that will enable immediate scientific breakthroughs. The Transiting Exoplanet Community ERS Program will exercise the time-series modes of all four JWST instruments that have been identified as the consensus highest priorities, observe the full suite of transiting planet characterization geometries (transits, eclipses, and phase curves), and target planets with host stars that span an illustrative range of brightnesses. The observations in this program were defined through an inclusive and transparent process that had participation from JWST instrument experts and international leaders in transiting exoplanet studies. Community engagement in the project will be centered on a two-phase Data Challenge that culminates with the delivery of planetary spectra, time-series instrument performance reports, and open-source data analysis toolkits in time to inform the agenda for Cycle 2 of the JWST mission.

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arXiv2017

The Atmosphere and Interior Structure of HAT-P-13b from Spitzer Secondary Eclipses

We present {\em Spitzer} secondary-eclipse observations of the hot Jupiter HAT-P-13 b in the 3.6 {\micron} and 4.5 {\micron} bands. HAT-P-13 b inhabits a two-planet system with a configuration that enables constraints on the planet's second Love number, \math{k\sb{2}}, from precise eccentricity measurements, which in turn constrains models of the planet's interior structure. We exploit the direct measurements of \math{e \cos ω} from our secondary-eclipse data and combine them with previously published radial velocity data to generate a refined model of the planet's orbit and thus an improved estimate on the possible interval for \math{k\sb{2}}. We report eclipse phases of \math{0.49154 \pm 0.00080} and \math{0.49711 \pm 0.00083} and corresponding \math{e \cos ω} estimates of \math{-0.0136 \pm 0.0013} and \math{-0.0048 \pm 0.0013}. Under the assumptions of previous work, our estimate of \math{k\sb{2}} of 0.81 {\pm} 0.10 is consistent with the lower extremes of possible core masses found by previous models, including models with no solid core. This anomalous result challenges both interior models and the dynamical assumptions that enable them, including the essential assumption of apsidal alignment. We also report eclipse depths of 0.081\% {\pm} 0.008\% in the 3.6 {\micron} channel and 0.088 \% {\pm} 0.028 \% in the 4.5 {\micron} channel. These photometric results are non-uniquely consistent with solar-abundance composition without any thermal inversion.

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arXiv2016

On Correlated-noise Analyses Applied To Exoplanet Light Curves

Time-correlated noise is a significant source of uncertainty when modeling exoplanet light-curve data. A correct assessment of correlated noise is fundamental to determine the true statistical significance of our findings. Here we review three of the most widely used correlated-noise estimators in the exoplanet field, the time-averaging, residual-permutation, and wavelet-likelihood methods. We argue that the residual-permutation method is unsound in estimating the uncertainty of parameter estimates. We thus recommend to refrain from this method altogether. We characterize the behavior of the time averaging's rms-vs.-bin-size curves at bin sizes similar to the total observation duration, which may lead to underestimated uncertainties. For the wavelet-likelihood method, we note errors in the published equations and provide a list of corrections. We further assess the performance of these techniques by injecting and retrieving eclipse signals into synthetic and real Spitzer light curves, analyzing the results in terms of the relative-accuracy and coverage-fraction statistics. Both the time-averaging and wavelet-likelihood methods significantly improve the estimate of the eclipse depth over a white-noise analysis (a Markov-chain Monte Carlo exploration assuming uncorrelated noise). However, the corrections are not perfect, when retrieving the eclipse depth from Spitzer datasets, these methods covered the true (injected) depth within the 68\% credible region in only $\sim$45--65\% of the trials. Lastly, we present our open-source model-fitting tool, Multi-Core Markov-Chain Monte Carlo ({MC$^3$}). This package uses Bayesian statistics to estimate the best-fitting values and the credible regions for the parameters for a (user-provided) model. {MC$^3$} is a Python/C code, available at https://github.com/pcubillos/MCcubed.

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arXiv2016

Transiting Exoplanet Studies and Community Targets for JWST's Early Release Science Program

The James Webb Space Telescope will revolutionize transiting exoplanet atmospheric science due to its capability for continuous, long-duration observations and its larger collecting area, spectral coverage, and spectral resolution compared to existing space-based facilities. However, it is unclear precisely how well JWST will perform and which of its myriad instruments and observing modes will be best suited for transiting exoplanet studies. In this article, we describe a prefatory JWST Early Release Science (ERS) program that focuses on testing specific observing modes to quickly give the community the data and experience it needs to plan more efficient and successful future transiting exoplanet characterization programs. We propose a multi-pronged approach wherein one aspect of the program focuses on observing transits of a single target with all of the recommended observing modes to identify and understand potential systematics, compare transmission spectra at overlapping and neighboring wavelength regions, confirm throughputs, and determine overall performances. In our search for transiting exoplanets that are well suited to achieving these goals, we identify 12 objects (dubbed "community targets") that meet our defined criteria. Currently, the most favorable target is WASP-62b because of its large predicted signal size, relatively bright host star, and location in JWST's continuous viewing zone. Since most of the community targets do not have well-characterized atmospheres, we recommend initiating preparatory observing programs to determine the presence of obscuring clouds/hazes within their atmospheres. Measurable spectroscopic features are needed to establish the optimal resolution and wavelength regions for exoplanet characterization. Other initiatives from our proposed ERS program include testing the instrument brightness limits and performing phase-curve observations.(Abridged)

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arXiv2015

TEA: A Code for Calculating Thermochemical Equilibrium Abundances

We present an open-source Thermochemical Equilibrium Abundances (TEA) code that calculates the abundances of gaseous molecular species. The code is based on the methodology of White et al. (1958) and Eriksson (1971). It applies Gibbs free-energy minimization using an iterative, Lagrangian optimization scheme. Given elemental abundances, TEA calculates molecular abundances for a particular temperature and pressure or a list of temperature-pressure pairs. We tested the code against the method of Burrows & Sharp (1999), the free thermochemical equilibrium code CEA (Chemical Equilibrium with Applications), and the example given by White et al. (1958). Using their thermodynamic data, TEA reproduces their final abundances, but with higher precision. We also applied the TEA abundance calculations to models of several hot-Jupiter exoplanets, producing expected results. TEA is written in Python in a modular format. There is a start guide, a user manual, and a code document in addition to this theory paper. TEA is available under a reproducible-research, open-source license via https://github.com/dzesmin/TEA.

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arXiv2014

Angular Momentum Exchange by Gravitational Torques and Infall in the Circumbinary Disk of the Protostellar System L1551 NE

We report the ALMA observation of the Class I binary protostellar system L1551 NE in the 0.9-mm continuum, C18O (3-2), and 13CO (3-2) lines at a ~1.6 times higher resolution and a ~6 times higher sensitivity than those of our previous SMA observations, which revealed a r ~300 AU-scale circumbinary disk in Keplerian rotation. The 0.9-mm continuum shows two opposing U-shaped brightenings in the circumbinary disk, and exhibits a depression between the circumbinary disk and the circumstellar disk of the primary protostar. The molecular lines trace non-axisymmetric deviations from Keplerian rotation in the circumbinary disk at higher velocities relative to the systemic velocity, where our previous SMA observations could not detect the lines. In addition, we detect inward motion along the minor axis of the circumbinary disk. To explain the newly-observed features, we performed a numerical simulation of gas orbits in a Roche potential tailored to the inferred properties of L1551 NE. The observed U-shaped dust features coincide with locations where gravitational torques from the central binary system are predicted to impart angular momentum to the circumbinary disk, producing shocks and hence density enhancements seen as a pair of spiral arms. The observed inward gas motion coincides with locations where angular momentum is predicted to be lowered by the gravitational torques. The good agreement between our observation and model indicates that gravitational torques from the binary stars constitute the primary driver for exchanging angular momentum so as to permit infall through the circumbinary disk of L1551 NE.

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arXiv2014

Deciphering the Atmospheric Composition of WASP-12b: A Comprehensive Analysis of its Dayside Emission

WASP-12b was the first planet reported to have a carbon-to-oxygen ratio (C/O) greater than one in its dayside atmosphere. However, recent work to further characterize its atmosphere and confirm its composition has led to incompatible measurements and divergent conclusions. Additionally, the recent discovery of stellar binary companions ~1" from WASP-12 further complicates the analyses and subsequent interpretations. We present a uniform analysis of all available Hubble and Spitzer Space Telescope secondary-eclipse data, including previously-unpublished Spitzer measurements at 3.6 and 4.5 microns. The primary controversy in the literature has centered on the value and interpretation of the eclipse depth at 4.5 microns. Our new measurements and analyses confirm the shallow eclipse depth in this channel, as first reported by Campo and collaborators and used by Madhusudhan and collaborators to infer a carbon-rich composition. To explain WASP-12b's observed dayside emission spectrum, we implemented several recent retrieval approaches. We find that when we exclude absorption due to C2H2 and HCN, which are not universally considered in the literature, our models require implausibly large atmospheric CO2 abundances, regardless of the C/O. By including C2H2 and HCN in our models, we find that a physically-plausible carbon-rich solution achieves the best fit to the available photometric and spectroscopic data. In comparison, the best-fit oxygen-rich models have abundances that are inconsistent with the chemical equilibrium expectations for hydrogen-dominated atmospheres and are 670 times less probable. Our best-fit solution is also 7.3*10^{6} times more probable than an isothermal blackbody model.

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arXiv2014

Spitzer observations of the thermal emission from WASP-43b

WASP-43b is one of the closest-orbiting hot Jupiters, with a semimajor axis of a = 0.01526 +/- 0.00018 AU and a period of only 0.81 days. However, it orbits one of the coolest stars with a hot Jupiter (Tstar = 4520 +/- 120 K), giving the planet a modest equilibrium temperature of Teq = 1440 +/- 40 K, assuming zero Bond albedo and uniform planetary energy redistribution. The eclipse depths and brightness temperatures from our jointly fit model are 0.347% +/- 0.013% and 1670 +/- 23 K at 3.6 μm and 0.382% +/- 0.015% and 1514 +/- 25 K at 4.5 μm. The eclipse timings improved the estimate of the orbital period, P, by a factor of three (P = 0.81347436 +/- 1.4*10-7 days) and put an upper limit on the eccentricity (e = 0.010+0.010 -0.007). We use our Spitzer eclipse depths along with four previously reported ground-based photometric observations in the near-infrared to constrain the atmospheric properties of WASP-43b. The data rule out a strong thermal inversion in the dayside atmosphere of WASP-43b. Model atmospheres with no thermal inversions and fiducial oxygen-rich compositions are able to explain all the available data. However, a wide range of metallicities and C/O ratios can explain the data. The data suggest low day-night energy redistribution in the planet, consistent with previous studies, with a nominal upper limit of about 35% for the fraction of energy incident on the dayside that is redistributed to the nightside.

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arXiv2013

Thermal Emission of WASP-14b Revealed with Three Spitzer Eclipses

Exoplanet WASP-14b is a highly irradiated, transiting hot Jupiter. Joshi et al. calculate an equilibrium temperature Teq of 1866 K for zero albedo and reemission from the entire planet, a mass of 7.3 +/- 0.5 Jupiter masses and a radius of 1.28 +/- 0.08 Jupiter radii. Its mean density of 4.6 g/cm3 is one of the highest known for planets with periods less than 3 days. We obtained three secondary eclipse light curves with the Spitzer Space Telescope. The eclipse depths from the best jointly fit model are $0.224\%$ +/- $0.018\%$ at 4.5 μm and $0.181\%$ +/- $0.022\%$ at 8.0 μm. The corresponding brightness temperatures are 2212 +/- 94 K and 1590 +/- 116 K. A slight ambiguity between systematic models suggests a conservative 3.6 μm eclipse depth of $0.19\%$ +/- $0.01\%$ and brightness temperature of 2242 +/- 55 K. Although extremely irradiated, WASP-14b does not show any distinct evidence of a thermal inversion. In addition, the present data nominally favor models with day night energy redistribution less than $~30\%$. The current data are generally consistent with oxygen-rich as well as carbon-rich compositions, although an oxygen-rich composition provides a marginally better fit. We confirm a significant eccentricity of e = 0.087 +/- 0.002 and refine other orbital parameters.

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