arXiv subjects

Joy Hsu

Publications and source records attributed to Joy Hsu.

22 records · Page 2Linked to original sources

arXiv2022

Monte Carlo Tree Search for Interpreting Stress in Natural Language

Natural language processing can facilitate the analysis of a person's mental state from text they have written. Previous studies have developed models that can predict whether a person is experiencing a mental health condition from social media posts with high accuracy. Yet, these models cannot explain why the person is experiencing a particular mental state. In this work, we present a new method for explaining a person's mental state from text using Monte Carlo tree search (MCTS). Our MCTS algorithm employs trained classification models to guide the search for key phrases that explain the writer's mental state in a concise, interpretable manner. Furthermore, our algorithm can find both explanations that depend on the particular context of the text (e.g., a recent breakup) and those that are context-independent. Using a dataset of Reddit posts that exhibit stress, we demonstrate the ability of our MCTS algorithm to identify interpretable explanations for a person's feeling of stress in both a context-dependent and context-independent manner.

cs.CL↗

arXiv2021

Capturing implicit hierarchical structure in 3D biomedical images with self-supervised hyperbolic representations

We consider the task of representation learning for unsupervised segmentation of 3D voxel-grid biomedical images. We show that models that capture implicit hierarchical relationships between subvolumes are better suited for this task. To that end, we consider encoder-decoder architectures with a hyperbolic latent space, to explicitly capture hierarchical relationships present in subvolumes of the data. We propose utilizing a 3D hyperbolic variational autoencoder with a novel gyroplane convolutional layer to map from the embedding space back to 3D images. To capture these relationships, we introduce an essential self-supervised loss -- in addition to the standard VAE loss -- which infers approximate hierarchies and encourages implicitly related subvolumes to be mapped closer in the embedding space. We present experiments on both synthetic data and biomedical data to validate our hypothesis.

cs.CV↗

arXiv2021

DARCNN: Domain Adaptive Region-based Convolutional Neural Network for Unsupervised Instance Segmentation in Biomedical Images

In the biomedical domain, there is an abundance of dense, complex data where objects of interest may be challenging to detect or constrained by limits of human knowledge. Labelled domain specific datasets for supervised tasks are often expensive to obtain, and furthermore discovery of novel distinct objects may be desirable for unbiased scientific discovery. Therefore, we propose leveraging the wealth of annotations in benchmark computer vision datasets to conduct unsupervised instance segmentation for diverse biomedical datasets. The key obstacle is thus overcoming the large domain shift from common to biomedical images. We propose a Domain Adaptive Region-based Convolutional Neural Network (DARCNN), that adapts knowledge of object definition from COCO, a large labelled vision dataset, to multiple biomedical datasets. We introduce a domain separation module, a self-supervised representation consistency loss, and an augmented pseudo-labelling stage within DARCNN to effectively perform domain adaptation across such large domain shifts. We showcase DARCNN's performance for unsupervised instance segmentation on numerous biomedical datasets.

cs.CV↗

arXiv2020

Improving Medical Annotation Quality to Decrease Labeling Burden Using Stratified Noisy Cross-Validation

As machine learning has become increasingly applied to medical imaging data, noise in training labels has emerged as an important challenge. Variability in diagnosis of medical images is well established; in addition, variability in training and attention to task among medical labelers may exacerbate this issue. Methods for identifying and mitigating the impact of low quality labels have been studied, but are not well characterized in medical imaging tasks. For instance, Noisy Cross-Validation splits the training data into halves, and has been shown to identify low-quality labels in computer vision tasks; but it has not been applied to medical imaging tasks specifically. In this work we introduce Stratified Noisy Cross-Validation (SNCV), an extension of noisy cross validation. SNCV can provide estimates of confidence in model predictions by assigning a quality score to each example; stratify labels to handle class imbalance; and identify likely low-quality labels to analyze the causes. We assess performance of SNCV on diagnosis of glaucoma suspect risk from retinal fundus photographs, a clinically important yet nuanced labeling task. Using training data from a previously-published deep learning model, we compute a continuous quality score (QS) for each training example. We relabel 1,277 low-QS examples using a trained glaucoma specialist; the new labels agree with the SNCV prediction over the initial label >85% of the time, indicating that low-QS examples mostly reflect labeler errors. We then quantify the impact of training with only high-QS labels, showing that strong model performance may be obtained with many fewer examples. By applying the method to randomly sub-sampled training dataset, we show that our method can reduce labelling burden by approximately 50% while achieving model performance non-inferior to using the full dataset on multiple held-out test sets.

cs.LG↗