arXiv subjects

Juan G. Calvo

Publications and source records attributed to Juan G. Calvo.

15 recordsLinked to original sources

arXiv2025

Coarse spaces for virtual element methods on irregular 3D subdomain decompositions

We present a two-level overlapping Schwarz preconditioner for three-dimensional problems discretized with the Virtual Element Method. Our approach handles general polyhedral meshes and irregular subdomains, extending the applicability of previous methods. Numerical experiments show robust performance with respect to the number of subdomains and mesh parameters, with condition-number bound comparable to classical finite element results. While alternative methods such as FETI-DP and BDDC are available, the simplicity and competitiveness of overlapping additive Schwarz methods underscore the practical significance of our contribution.

math.NA↗

arXiv2024

Stochastic two-patch epidemic model with nonlinear recidivism

We develop a stochastic two-patch epidemic model with nonlinear recidivism to investigate infectious disease dynamics in heterogeneous populations. Extending a deterministic framework, we introduce stochasticity to account for random transmission, recovery, and inter-patch movement fluctuations. We showcase the interplay between local dynamics and migration effects on disease persistence using Monte Carlo simulations and three stochastic approximations-discrete-time Markov chain (DTMC), Poisson, and stochastic differential equations (SDE). Our analysis shows that stochastic effects can cause extinction events and oscillations near critical thresholds like the basic reproduction number, R0, phenomena absent in deterministic models. Numerical simulations highlight source-sink dynamics, where one patch is a persistent infection source while the other experiences intermittent outbreaks.

q-bio.PE↗

arXiv2023

Robust domain decomposition methods for high-contrast multiscale problems on irregular domains with virtual element discretizations

Our research focuses on the development of domain decomposition preconditioners tailored for second-order elliptic partial differential equations. Our approach addresses two major challenges simultaneously: i) effectively handling coefficients with high-contrast and multiscale properties, and ii) accommodating irregular domains in the original problem, the coarse mesh, and the subdomain partition. The robustness of our preconditioners is crucial for real-world applications, such as the efficient and accurate modeling of subsurface flow in porous media and other important domains. The core of our method lies in the construction of a suitable partition of unity functions and coarse spaces utilizing local spectral information. Leveraging these components, we implement a two-level additive Schwarz preconditioner. We demonstrate that the condition number of the preconditioned systems is bounded with a bound that is independent of the contrast. Our claims are further substantiated through selected numerical experiments, which confirm the robustness of our preconditioners.

math.NA↗

arXiv2023

A nonlinear relapse model with disaggregated contact rates: analysis of a forward-backward bifurcation

We developed a nonlinear differential equation model to explore the dynamics of relapse phenomena. Our incidence rate function is formulated, taking inspiration from recent adaptive algorithms. It incorporates contact behavior for individuals in each health class. We use constant contact rates at each health status for our analytical results and prove conditions for different forward-backward bifurcation scenarios. The relationship between the different contact rates influences these conditions. Numerical examples show the sensitivity of the model toward initial conditions. In particular, we highlight the effect of temporarily recovered individuals and infected initial conditions.

math.DS↗

arXiv2023

Bayesian spatio-temporal model with INLA for dengue fever risk prediction in Costa Rica

Due to the rapid geographic spread of the Aedes mosquito and the increase in dengue incidence, dengue fever has been an increasing concern for public health authorities in tropical and subtropical countries worldwide. Significant challenges such as climate change, the burden on health systems, and the rise of insecticide resistance highlight the need to introduce new and cost-effective tools for developing public health interventions. Various and locally adapted statistical methods for developing climate-based early warning systems have increasingly been an area of interest and research worldwide. Costa Rica, a country with micro-climates and endemic circulation of the dengue virus (DENV) since 1993, provides ideal conditions for developing projection models with the potential to help guide public health efforts and interventions to control and monitor future dengue outbreaks.

stat.AP↗

arXiv2023

Common patterns between dengue cases, climate, and local environmental variables in Costa Rica: A Wavelet Approach

Throughout history, prevention and control of dengue transmission have challenged public health authorities worldwide. In the last decades, the interaction of multiple factors, such as environmental and climate variability, has influenced increments in incidence and geographical spread of the virus. In Costa Rica, a country characterized by multiple microclimates separated by short distances, dengue has been endemic since its introduction in 1993. Understanding the role of climatic and environmental factors in the seasonal and inter-annual variability of disease spread is essential to develop effective surveillance and control efforts. In this study, we conducted a wavelet time series analysis of weekly climate, local environmental variables, and dengue cases (2001-2019) from 32 cantons in Costa Rica to identify significant periods (e.g., annual, biannual) in which climate and environmental variables co-varied with dengue cases. Wavelet coherence analysis was used to characterize seasonality, multi-year outbreaks, and relative delays between the time series. Results show that dengue outbreaks occurring every 3 years in cantons located in the country's Central, North, and South Pacific regions were highly coherent with the Oceanic Niño 3.4 and the Tropical North Caribbean Index (TNA). Dengue cases were in phase with El Niño 3.4 and TNA, with El Niño 3.4 ahead of dengue cases by roughly nine months and TNA ahead by less than three months. Annual dengue outbreaks were coherent with local environmental variables (NDWI, EVI, Evapotranspiration, and Precipitation) in most cantons except those located in the Central, South Pacific, and South Caribbean regions of the country. The local environmental variables were in phase with dengue cases and were ahead by around three months.

q-bio.PE↗

arXiv2022

A multilayer network model of Covid-19: implications in public health policy in Costa Rica

Successful partnerships between researchers, experts and public health authorities has been critical to navigate the challenges of the Covid-19 pandemic worldwide. In Costa Rica, we constructed a multilayer network model that incorporates a diverse contact structure for each individual (node). The different layers which constitute the individual's contact structure include: family, friends, and sporadic interactions. Different scenarios were constructed to forecast and have a better understanding of the possible routes of the pandemic in the country, given the information that was available at the time and the different measures implemented by the health authorities of the country. Strong collaboration within our diverse team allowed using the model to tailor advice on contingency measures to health authorities. The model helped develop informed strategies to prepare the public health system in Costa Rica. The development, evolution and applications of a multilayer network model of Covid-19 in the adoption of sanitary measures in Costa Rica has been an example of the potential of such partnerships.

physics.soc-ph↗

arXiv2022

Assessing dengue fever risk in Costa Rica by using climate variables and machine learning techniques

Dengue fever is a vector-borne disease mostly endemic to tropical and subtropical countries that affect millions every year and is considered a significant burden for public health. Its geographic distribution makes it highly sensitive to climate conditions. Here, we explore the effect of climate variables using the Generalized Additive Model for location, scale, and shape (GAMLSS) and Random Forest (RF) machine learning algorithms. Using the reported number of dengue cases, we obtained reliable predictions. The uncertainty of the predictions was also measured. These predictions will serve as input to health officials to further improve and optimize the allocation of resources prior to dengue outbreaks.

cs.CY↗

arXiv2021

Projecting the Impact of Covid-19 Variants and Vaccination Strategies in Disease Transmission using a Multilayer Network Model in Costa Rica

For countries starting to receive steady supplies of vaccines against SARS-CoV-2, the course of Covid-19 for the following months will be determined by the emergence of new variants and successful roll-out of vaccination campaigns. To anticipate this scenario, we used a multilayer network model developed to forecast the transmission dynamics of Covid-19 in Costa Rica, and to estimate the impact of the introduction of the Delta variant in the country, under two plausible vaccination scenarios, one sustaining Costa Rica's July 2021 vaccination pace of 30,000 doses per day and with high acceptance from the population and another with declining vaccination pace to 13,000 doses per day and with lower acceptance. Results suggest that the introduction and gradual dominance of the Delta variant would increase Covid-19 hospitalizations and ICU admissions between $35\%$ and $33.25\%$, from August 2021 to December 2021, depending on vaccine administration and acceptance. In the presence of the Delta variant, new Covid-19 hospitalizations and ICU admission would experience an average increase of $24.26\%$ and $27.19\%$ respectively in the same period if the vaccination pace drops. Our results can help decision-makers better prepare for the COVID-19 pandemic in the months to come.

q-bio.PE↗

arXiv2021

Wavelet Analysis of Dengue Incidence and its Correlation with Weather and Vegetation Variables in Costa Rica

Dengue represents a serious public health problem in tropical and subtropical regions worldwide. The number of dengue cases and its geographical expansion has increased in recent decades, driven mostly after by social and environmental factors. In Costa Rica, it has been endemic since it was first introduced in 1993. In this article, wavelet analyzes (wavelet power spectrum and wavelet coherence) were performed to detect and quantify dengue periodicity and describe patterns of synchrony between dengue incidence and climatic and environmental factors: Normalized Difference Water Index, Enhanced Vegetation Index, Normalized Difference Vegetation Index, Tropical North Atlantic indices, Land Surface Temperature, and El Niño Southern Oscillation indices in 32 different cantons, using dengue surveillance from 2000 to 2019. Results showed that the dengue dominant cycles are in periods of 1, 2, and 3 years. The wavelet coherence analysis showed that the vegetation indices are correlated with dengue incidence in places located in the central and Northern Pacific of the country in the period of 1 year. Climatic variables such as El Niño 3, 3.4, 4, showed a strong correlation with dengue incidence in the period of 3 years and the Tropical North Atlantic is correlated with dengue incidence in the period of 1 year. Land Surface Temperature showed a strong correlation with dengue time series in the 32 cantons.

q-bio.PE↗

arXiv2021

A Multilayer Network Model implementation for Covid-19

We present a numerical implementation for a multilayer network used to model the transmission of Covid-19 or other diseases with a similar transmission mechanism. The model incorporates different contact types between individuals (household, social contacts, and strangers), which allows flexibility compared to standard SIR type models. The algorithm described in this paper is a simplification of the model used to give public health authorities an additional tool for the decision-making process in Costa Rica, by simulating extensive possible scenarios and projections.

physics.soc-ph↗

arXiv2021

The role of mobility and sanitary measures on Covid-19 in Costa Rica, March through July 2020

The aim of this paper is to infer the effects that changes on human mobility had on the transmission dynamics during the first four months of the SARS-CoV-2 outbreak in Costa Rica, before community transmission was established in the country. By using parametric and non parametric detection change-point techniques we were able to identify two different periods where at least the trend and variability of new daily cases significantly changed. In order to combine this information with population movement, we use data from Google Mobility Trends that allow us to estimate the lag between the rate of new daily cases and each of the categories established by Google. The information is then used to establish an association between changes in population mobility and the sanitary measures taken during the study period.

stat.AP↗

arXiv2019

Dengue model with early-life stage of vectors and age-structure within host

We construct an epidemic model for the transmission of dengue fever with an early-life stage in the vector dynamics and age-structure within hosts. The early-life stage of the vector is modeled via a general function that supports multiple vector densities. The {\it basic reproductive number} and {\it vector demographic threshold} are computed to study the local and global stability of the infection-free state. A numerical framework is implemented and simulations are performed.

q-bio.PE↗

arXiv2019

A two-patch epidemic model with nonlinear reinfection

The propagation of infectious diseases and its impact on individuals play a major role in disease dynamics, and it is important to incorporate population heterogeneity into efforts to study diseases. As a simplistic but illustrative example, we examine interactions between urban and rural populations in the dynamics of disease spreading. Using a compartmental framework of susceptible--infected--susceptible ($\mathrm{SI\widetilde{S}}$) dynamics with some level of immunity, we formulate a model that allows nonlinear reinfection. We investigate the effects of population movement in the simplest scenario: a case with two patches, which allows us to model movement between urban and rural areas. To study the dynamics of the system, we compute a basic reproduction number for each population (urban and rural). We also compute steady states, determine the local stability of the disease-free steady state, and identify conditions for the existence of endemic steady states. From our analysis and computational experiments, we illustrate that population movement plays an important role in disease dynamics. In some cases, it can be rather beneficial, as it can enlarge the region of stability of a disease-free steady state.

q-bio.PE↗

arXiv2018

A Partial Differential Equation Model with Age-Structure and Nonlinear Recidivism: Conditions for a Backward Bifurcation and a General Numerical Implementation

\noindent We formulate an age-structured three-staged nonlinear partial differential equation model that features {\it nonlinear} recidivism to the infected ({\it infectious}) class from the {\it temporarily} recovered class. Equilibria are computed, as well as local and global stability of the {\it infection-free} equilibrium. As a result, a backward-bifurcation exists under necessary and sufficient conditions. A generalized numerical framework is established and numerical experiments are explored for two positive solutions to exist in the {\it infectious} class.

math.DS↗