arXiv subjects

Juan Martinez-Sykora

Publications and source records attributed to Juan Martinez-Sykora.

At least 19 recordsLinked to original sources

arXiv2026

Multi-Height Spectropolarimetric Signatures of Magnetoacoustic Waves in Solar Plage

We analyze high-cadence spectropolarimetric observations of solar plage obtained with the Visible Spectro-Polarimeter (ViSP) on the Daniel K. Inouye Solar Telescope (DKIST) to investigate low-chromospheric waves sampled by the Na I D1 5896 Angstrom and Ca II 8542 Angstrom lines. Observations were taken at an oblique viewing angle, providing sensitivity to transverse motions. Magnetic oscillations within plage elements exhibit significant line-of-sight (LOS) RMS amplitudes of approximately 9 G on average in the Na I D1 line, whereas the corresponding Ca II oscillations are only marginally above the noise level. Adaptive profile tracking provided line-core intensities and Doppler velocities, the weak-field approximation provided LOS magnetic fields, and non-LTE inversions provided mass densities and formation heights. Cross-spectral analysis shows velocity-intensity phase distributions coupled at -90 degrees, consistent with compressive oscillations. The velocity phases in Na I-Ca II indicate upward propagation and the phase speeds are predominantly sub-Alfvenic, consistent with slow magnetoacoustic waves. Although the slit geometry prevents a definitive identification of the tube eigenmode, the differing magnetic phase relationships suggest a height-dependent sausage-like behavior in the coupling between the magnetic and compressive perturbations. Additionally, our inferred wave fluxes are insufficient to heat active-region plage.

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arXiv2026

On the cool nature of coronal nanojets

Reconnection-driven nanoflares are widely considered a leading mechanism for coronal-loop heating, but their direct fingerprints in the tenuous coronal plasma remain elusive. The recently discovered coronal nanojets offer a potential probe of reconnection dynamics, but their extreme collimation, directionality and multi-wavelength visibility are not fully understood. Here we present a 3D rMHD simulation that unprecedentedly reproduces the key properties of nanojets, offering a viable model to explain their nature. These results provide a unified picture in which nanojet morphology, dynamics and detectability are contingent on the thermodynamic environment of reconnection. Together, our results point to a cool origin of coronal nanojets, where cool and dense material permits narrow, multi-band jet signatures to emerge from reconnection.

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arXiv2026

The connection between solar coronal abundances and the underlying lower atmospheric properties

Elemental abundances in the solar corona and solar wind are often observed to differ from those in the solar photosphere, most commonly showing an enhancement of low first ionization-potential (FIP) elements (the FIP effect). The observational evidence of the connection between the chemical fractionation in the solar atmosphere with FIP suggests that the mechanisms responsible for this effect take place in the chromosphere, where low-FIP elements are mostly ionized, while high-FIP elements remain mostly neutral. We discuss the findings of recent observational studies that have investigated the possible footprint of coronal abundance anomalies in the lower atmosphere. We also discuss the limitations of current observations, and future perspectives on addressing this important open issue in solar physics.

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arXiv2025

3D MHD simulations of coronal loops heated via magnetic braiding I. Continuous driving

The nature and detailed properties of the heating of the million-degree solar corona are important issues that are still largely unresolved. Nanoflare heating might be dominant in active regions and quiet Sun, although direct signatures of such small-scale events are difficult to observe in the highly conducting, faint corona. The aim of this work is to test the theory of coronal heating by nanoflares in braided magnetic field structures. We analyze a 3D MHD model of a multistrand flux tube in a stratified solar atmosphere, driven by twisting motions at the boundaries. We show how the magnetic structure is maintained at high temperature and for an indefinite time, by intermittent episodes of local magnetic energy release due to reconnection. We forward-modelled optically thin emission with SDO/AIA and MUSE and compared the synthetic observations with the intrinsic coronal plasma properties, focusing on the response to impulsive coronal heating. Currents build up and their impulsive dissipation into heat are also investigated through different runs. In this first paper, we describe the proliferation of heating from the dissipation of narrow current sheets in realistic simulations of braided coronal flux tubes at unprecedented high spatial resolutions.

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arXiv2025

3D MHD simulations of coronal loops heated via magnetic braiding II. Automatic detection of reconnection outflows and statistical analysis of their properties

Recent observations of fast and bursty ``nanojets'' suggest novel diagnostics of nanoflare heating in the solar corona. The aim of this work is to investigate the presence and properties of reconnection outflows, similar to observed nanojets, in numerical simulations, and explore their relationship with the nanoflare properties. This work explores their potential as diagnostics for nanoflare heating in observations. We developed an algorithm of Reconnection Outflows Automatic Detection (ROAD) in 3D MHD simulations of coronal loops. We applied the algorithm to a 3D MHD stratified coronal loop model heated by magnetic reconnection and analyzed the statistical properties of the jets produced at reconnection sites, over about one solar hour. The magnetic structure is maintained at high temperature and for an indefinite time by intermittent episodes of local magnetic energy release due to reconnection.

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arXiv2022

Coronal Abundances in an Active Region: Evolution and Underlying Chromospheric and Transition Region Properties

The element abundances in the solar corona and solar wind are often different from those of the solar photosphere, typically with a relative enrichment of elements with low first ionization potential (FIP effect). Here we study the spatial distribution and temporal evolution of the coronal chemical composition in an active region (AR) over about 10 days, using Hinode/EIS spectra, and we also analyze coordinated IRIS observations of the chromospheric and transition region emission to investigate any evidence of the footprints of the FIP effect in the lower atmosphere. To derive the coronal abundances we use a spectral inversion method recently developed for the MUSE investigation (Cheung et al. 2019, De Pontieu et al. 2020). We find that in the studied active region (AR 12738) the coronal FIP bias presents significant spatial variations, with its highest values (~ 2.5-3.5) in the outflow regions at the boundary of the AR, but typically modest temporal variability. Some moss regions and some regions around the AR sunspot show enhanced FIP (~ 2-2.5) with respect to the AR core, which has only a small FIP bias of ~1.5. The FIP bias appears most variable in some of these moss regions. The IRIS observations reveal that the chromospheric turbulence, as derived from IRIS2 inversions of the Mg II spectra, is enhanced in the outflow regions characterized by the high FIP bias, providing significant new constraints to both models aimed at explaining the formation of AR outflows and models of chemical fractionation.

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arXiv2022

A novel inversion method to determine the coronal magnetic field including the impact of bound-free absorption

The magnetic field governs the corona; hence it is a crucial parameter to measure. Unfortunately, existing techniques for estimating its strength are limited by strong assumptions and limitations. These techniques include photospheric or chromospheric field extrapolation using potential or non-linear-force-free methods, estimates based on coronal seismology, or by direct observations via, e.g., the Cryo-NIRSP instrument on DKIST which will measure the coronal magnetic field, but only off the limb. Alternately, in this work we investigate a recently developed approach based on the magnetic-field-induced (MIT) transition of the \fex~257.261~Å. In order to examine this approach, we have synthesized several \fex\ lines from two 3D magnetohydrodynamic simulations, one modeling an emerging flux region and the second an established mature active region. In addition, we take bound-free absorption from neutral hydrogen and helium and singly ionised helium into account. The absorption from cool plasma that occurs at coronal heights has a significant impact on determining the magnetic field. We investigate in detail the challenges of using these \fex\ lines to measure the field, considering their density and temperature dependence. We present a novel approach to deriving the magnetic field from the MIT using inversions of the differential emission measure as a function of the temperature, density, and magnetic field. This approach successfully estimates the magnetic field strength (up to \%18 relative error) in regions that do not suffer from significant absorption and that have relatively strong coronal magnetic fields ($>250$~G). This method allows the masking of regions where absorption is significant.

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arXiv2021

Probing the physics of the solar atmosphere with the Multi-slit Solar Explorer (MUSE): I. Coronal Heating

The Multi-slit Solar Explorer (MUSE) is a proposed NASA MIDEX mission, currently in Phase A, composed of a multi-slit EUV spectrograph (in three narrow spectral bands centered around 171A, 284A, and 108A) and an EUV context imager (in two narrow passbands around 195A and 304A). MUSE will provide unprecedented spectral and imaging diagnostics of the solar corona at high spatial (<0.5 arcsec), and temporal resolution (down to ~0.5s) thanks to its innovative multi-slit design. By obtaining spectra in 4 bright EUV lines (Fe IX 171A , Fe XV 284A, Fe XIX-Fe XXI 108A) covering a wide range of transition region and coronal temperatures along 37 slits simultaneously, MUSE will for the first time be able to "freeze" (at a cadence as short as 10 seconds) with a spectroscopic raster the evolution of the dynamic coronal plasma over a wide range of scales: from the spatial scales on which energy is released (~0.5 arcsec) to the large-scale often active-region size (170 arcsec x 170 arcsec) atmospheric response. We use advanced numerical modeling to showcase how MUSE will constrain the properties of the solar atmosphere on the spatio-temporal scales (~0.5 arcsec, ~20 seconds) and large field-of-view on which various state-of-the-art models of the physical processes that drive coronal heating, solar flares and coronal mass ejections (CMEs) make distinguishing and testable predictions. We describe how the synergy between MUSE, the single-slit, high-resolution Solar-C EUVST spectrograph, and ground-based observatories (DKIST and others) can address how the solar atmosphere is energized, and the critical role MUSE plays because of the multi-scale nature of the physical processes involved. In this first paper, we focus on how comparisons between MUSE observations and theoretical models will significantly further our understanding of coronal heating mechanisms.

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arXiv2020

The Formation Height of Millimeter-wavelength Emission in the Solar Chromosphere

In the past few years, the ALMA radio telescope has become available for solar observations. ALMA diagnostics of the solar atmosphere are of high interest because of the theoretically expected linear relationship between the brightness temperature at mm wavelengths and the local gas temperature in the solar atmosphere. Key for the interpretation of solar ALMA observations is understanding where in the solar atmosphere the ALMA emission originates. Recent theoretical studies have suggested that ALMA bands at 1.2 (band 6) and 3 mm (band 3) form in the middle and upper chromosphere at significantly different heights. We study the formation of ALMA diagnostics using a 2.5D radiative MHD model that includes the effects of ion-neutral interactions (ambipolar diffusion) and non-equilibrium ionization of hydrogen and helium. Our results suggest that in active regions and network regions, observations at both wavelengths most often originate from similar heights in the upper chromosphere, contrary to previous results. Non-equilibrium ionization increases the opacity in the chromosphere so that ALMA mostly observe spicules and fibrils along the canopy fields. We combine these modeling results with observations from IRIS, SDO and ALMA to suggest a new interpretation for the recently reported "dark chromospheric holes", regions of very low temperatures in the chromosphere.

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arXiv2019

Ion-neutral interactions and non-equilibrium ionization in the solar chromosphere

The thermal structure of the chromosphere is regulated through a complex interaction of various heating processes, radiative cooling, and the ionization degree of the plasma. Here we study the impact on the thermal properties of the chromosphere when including the combined action of non-equilibrium ionization (NEI) of hydrogen and helium and ion-neutral interaction effects. We have performed a 2.5D radiative magnetohydrodynamic simulation including ion-neutral interaction effects by solving the generalized Ohm's law (GOL) as well as NEI for hydrogen and helium using the Bifrost code. The GOL equation includes ambipolar diffusion and the Hall term. We compare this simulation with another simulation that computes the ionization in local thermodynamic equilibrium (LTE) including ion-neutral interaction effects. Our numerical models reveal substantial thermal differences in magneto-acoustic shocks, the wake behind the shocks, spicules, low-lying magnetic loops, and the transition region. In particular, we find that heating through ambipolar diffusion in shock wakes is substantially less efficient, while in the shock fronts themselves it is more efficient, under NEI conditions than when assuming LTE.

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arXiv2019

The Multi-slit Approach to Coronal Spectroscopy with the Multi-slit Solar Explorer (MUSE)

The Multi-slit Solar Explorer (MUSE) is a proposed mission aimed at understanding the physical mechanisms driving the heating of the solar corona and the eruptions that are at the foundation of space weather. MUSE contains two instruments, a multi-slit EUV spectrograph and a context imager. It will simultaneously obtain EUV spectra (along 37 slits) and context images with the highest resolution in space (0.33-0.4 arcsec) and time (1-4 s) ever achieved for the transition region and corona. The MUSE science investigation will exploit major advances in numerical modeling, and observe at the spatial and temporal scales on which competing models make testable and distinguishable predictions, thereby leading to a breakthrough in our understanding of coronal heating and the drivers of space weather. By obtaining spectra in 4 bright EUV lines (Fe IX 171A, Fe XV 284A, Fe XIX-XXI 108A) covering a wide range of transition region and coronal temperatures along 37 slits simultaneously, MUSE will be able to "freeze" the evolution of the dynamic coronal plasma. We describe MUSE's multi-slit approach and show that the optimization of the design minimizes the impact of spectral lines from neighboring slits, generally allowing line parameters to be accurately determined. We also describe a Spectral Disambiguation Code to resolve multi-slit ambiguity in locations where secondary lines are bright. We use simulations of the corona and eruptions to perform validation tests and show that the multi-slit disambiguation approach allows accurate determination of MUSE observables in locations where significant multi-slit contamination occurs.

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arXiv2017

Forward modeling of emission in SDO/AIA passbands from dynamic 3D simulations

It is typically assumed that emission in the passbands of the Atmospheric Imaging Assembly (AIA) onboard the Solar Dynamics Observatory (SDO) is dominated by single or several strong lines from ions that under equilibrium conditions are formed in a narrow range of temperatures. However, most SDO/AIA channels also contain contributions from lines of ions that have formation temperatures that are significantly different from the "dominant" ion(s). We investigate the importance of these lines by forward modeling the emission in the SDO/AIA channels with 3D radiative MHD simulations of a model that spans the upper layer of the convection zone to the low corona. The model is highly dynamic. In addition, we pump a steadily increasing magnetic flux into the corona, in order to increase the coronal temperature through the dissipation of magnetic stresses. As a consequence, the model covers different ranges of coronal temperatures as time progresses. The model covers coronal temperatures that are representative of plasma conditions in coronal holes and quiet sun. The 131, 171, and 304 Å AIA passbands are found to be least influenced by the so-called "non-dominant" ions, and the emission observed in these channels comes mostly from plasma at temperatures near the formation temperature of the dominant ion(s). On the other hand, the other channels are strongly influenced by the non-dominant ions, and therefore significant emission in these channels comes from plasma at temperatures that are different from the "canonical" values. We have also studied the influence of non-dominant ions on the AIA passbands when different element abundances are assumed (photospheric and coronal), and when the effects of the electron density on the contribution function are taken into account.

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arXiv2017

Why Is Non-thermal Line Broadening of Spectral Lines in The Lower Transition Region of the Sun Independent of Spatial Resolution?

Spectral observations of the solar transition region (TR) and corona show broadening of spectral lines beyond what is expected from thermal and instrumental broadening. The remaining non-thermal broadening is significant (5-30 km/s) and correlated with the intensity. Here we study spectra of the TR Si IV 1403 Angstrom line obtained at high resolution with the Interface Region Imaging Spectrograph (IRIS). We find that the large improvement in spatial resolution (0.33 arcsec) of IRIS compared to previous spectrographs (2 arcsec) does not resolve the non-thermal line broadening which in most regions remains at pre-IRIS levels of about 20 km/s. This invariance to spatial resolution indicates that the processes behind the broadening occur along the line-of-sight (LOS) and/or on spatial scales (perpendicular to the LOS) smaller than 250 km. Both effects appear to play a role. Comparison with IRIS chromospheric observations shows that, in regions where the LOS is more parallel to the field, magneto-acoustic shocks driven from below impact the TR and can lead to significant non-thermal line broadening. This scenario is supported by MHD simulations. While these do not show enough non-thermal line broadening, they do reproduce the long-known puzzling correlation between non-thermal line broadening and intensity. This correlation is caused by the shocks, but only if non-equilibrium ionization is taken into account. In regions where the LOS is more perpendicular to the field, the prevalence of small-scale twist is likely to play a significant role in explaining the invariance and correlation with intensity.

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arXiv2017

Observations and numerical models of solar coronal heating associated with spicules

Spicules have been proposed as significant contributors to the mass and energy balance of the corona. While previous observations have provided a glimpse of short-lived transient brightenings in the corona that are associated with spicules, these observations have been contested and are the subject of a vigorous debate both on the modeling and the observational side. Therefore, it remains unclear whether plasma is heated to coronal temperatures in association with spicules. We use high-resolution observations of the chromosphere and transition region with the Interface Region Imaging Spectrograph (IRIS) and of the corona with the Atmospheric Imaging Assembly (AIA) onboard the Solar Dynamics Observatory (SDO) to show evidence of the formation of coronal structures associated with spicular mass ejections and heating of plasma to transition region and coronal temperatures. Our observations suggest that a significant fraction of the highly dynamic loop fan environment associated with plage regions may be the result of the formation of such new coronal strands, a process that previously had been interpreted as the propagation of transient propagating coronal disturbances (PCD)s. Our observations are supported by 2.5D radiative MHD simulations that show heating to coronal temperatures in association with spicules. Our results suggest that heating and strong flows play an important role in maintaining the substructure of loop fans, in addition to the waves that permeate this low coronal environment.

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arXiv2017

What causes the high apparent speeds in chromospheric and transition region spicules on the Sun?

Spicules are the most ubuiquitous type of jets in the solar atmosphere. The advent of high-resolution imaging and spectroscopy from the Interface Region Imaging Spectrograph (IRIS) and ground-based observatories has revealed the presence of very high apparent motions of order 100-300 km/s in spicules, as measured in the plane of the sky. However, line-of-sight measurements of such high speeds have been difficult to obtain, with values deduced from Doppler shifts in spectral lines typically of order 30-70 km/s. In this work we resolve this long-standing discrepancy using recent 2.5D radiative MHD simulations. This simulation has revealed a novel driving mechanism for spicules in which ambipolar diffusion resulting from ion-neutral interactions plays a key role. In our simulation we often see that the upward propagation of magnetic waves and electrical currents from the low chromosphere into already existing spicules can lead to rapid heating when the currents are rapidly dissipated by ambipolar diffusion. The combination of rapid heating and the propagation of these currents at Alfvénic speeds in excess of 100 km/s leads to the very rapid apparent motions, and often wholesale appearance, of spicules at chromospheric and transition region temperatures. In our simulation, the observed fast apparent motions in such jets are actually a signature of a heating front, and much higher than the mass flows, which are of order 30-70 km/s. Our results can explain the behavior of transition region "network jets" and the very high apparent speeds reported for some chromospheric spicules.

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arXiv2015

Time Dependent Non-Equilibrium Ionization of Transition Region Lines Observed with IRIS

The properties of non-statistical equilibrium ionization of silicon and oxygen ions are analyzed in this work. We focus on four solar targets (quiet sun, coronal hole, plage, quiescent active region, AR, and flaring AR) as observed with the Interface Region Imaging Spectrograph (IRIS). IRIS is best suited for this work due to the high cadence (up to 0.5s), high spatial resolution (up to 0.32"), and high signal to noise ratios for O IV and Si IV. We find that the observed intensity ratio between lines of three times ionized silicon and oxygen ions depends on their total intensity and that this correlation varies depending on the region observed (quiet sun, coronal holes, plage or active regions) and on the specific observational objects present (spicules, dynamic loops, jets, micro-flares or umbra). In order to interpret the observations, we compare them with synthetic profiles taken from 2D self-consistent radiative MHD simulations of the solar atmosphere, where the statistical equilibrium or non-equilibrium treatment silicon and oxygen is applied. These synthetic observations show vaguely similar correlations as in the observations, i.e. between the intensity ratios and their intensities, but only in the non-equilibrium case do we find that (some of) the observations can be reproduced. We conclude that these lines are formed out of statistical equilibrium. We use our time-dependent non-equilibrium ionization simulations to describe the physical mechanisms behind these observed properties.

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arXiv2015

Multi-Parametric Study of Rising 3D Buoyant Flux Tubes in an Adiabatic Stratification Using AMR

We study the buoyant rise of magnetic flux tubes embedded in an adiabatic stratification using two-and three-dimensional, MHD simulations. We analyze the dependence of the tube evolution on the field line twist and on the curvature of the tube axis in different diffusion regimes. To be able to achieve a comparatively high spatial resolution we use the FLASH code, which has a built-in Adaptive Mesh Refinement (AMR) capability. Our 3D experiments reach Reynolds numbers that permit a reasonable comparison of the results with those of previous 2D simulations. When the experiments are run without AMR, hence with a comparatively large diffusivity, the amount of longitudinal magnetic flux retained inside the tube increases with the curvature of the tube axis. However, when a low-diffusion regime is reached by using the AMR algorithms, the magnetic twist is able to prevent the splitting of the magnetic loop into vortex tubes and the loop curvature does not play any significant role. We detect the generation of vorticity in the main body of the tube of opposite sign on the opposite sides of the apex. This is a consequence of the inhomogeneity of the azimuthal component of the field on the flux surfaces. The lift force associated with this global vorticity makes the flanks of the tube move away from their initial vertical plane in an antisymmetric fashion. The trajectories have an oscillatory motion superimposed, due to the shedding of vortex rolls to the wake, which creates a Von Karman street.

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arXiv2015

The Role of Partial Ionization Effects in the Chromosphere

The energy for the coronal heating must be provided from the convection zone. The amount and the method by which this energy is transferred into the corona depends on the properties of the lower atmosphere and the corona itself. We review: 1) how the energy could be built in the lower solar atmosphere; 2) how this energy is transferred through the solar atmosphere; and 3) how the energy is finally dissipated in the chromosphere and/or corona. Any mechanism of energy transport has to deal with the various physical processes in the lower atmosphere. We will focus on a physical process that seems to be highly important in the chromosphere and not deeply studied until recently: the ion-neutral interaction effects (INIE) in the chromosphere. We review the relevance and the role of the partial ionization in the chromosphere and show that this process actually impacts considerably the outer solar atmosphere. We include analysis of our 2.5D radiative MHD simulations with the Bifrost code (Gudiksen et al. 2011) including the partial ionization effects on the chromosphere and corona and thermal conduction along magnetic field lines. The photosphere, chromosphere and transition region are partially ionized and the interaction between ionized particles and neutral particles has important consequences on the magneto-thermodynamics of these layers. The INIE are treated using generalized Ohm's law, i.e., we consider the Hall term and the ambipolar diffusion in the induction equation. The interaction between the different species affects the modeled atmosphere as follows: 1) the ambipolar diffusion dissipates magnetic energy and increases the minimum temperature in the chromosphere; 2) the upper chromosphere may get heated and expanded over a greater range of heights. These processes reveal appreciable differences between the modeled atmospheres of simulations with and without INIE.

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