arXiv subjects

Julia E. Vogt

Publications and source records attributed to Julia E. Vogt.

At least 55 records · Page 3Linked to original sources

arXiv2024

Beyond Concept Bottleneck Models: How to Make Black Boxes Intervenable?

Recently, interpretable machine learning has re-explored concept bottleneck models (CBM). An advantage of this model class is the user's ability to intervene on predicted concept values, affecting the downstream output. In this work, we introduce a method to perform such concept-based interventions on pretrained neural networks, which are not interpretable by design, only given a small validation set with concept labels. Furthermore, we formalise the notion of intervenability as a measure of the effectiveness of concept-based interventions and leverage this definition to fine-tune black boxes. Empirically, we explore the intervenability of black-box classifiers on synthetic tabular and natural image benchmarks. We focus on backbone architectures of varying complexity, from simple, fully connected neural nets to Stable Diffusion. We demonstrate that the proposed fine-tuning improves intervention effectiveness and often yields better-calibrated predictions. To showcase the practical utility of our techniques, we apply them to deep chest X-ray classifiers and show that fine-tuned black boxes are more intervenable than CBMs. Lastly, we establish that our methods are still effective under vision-language-model-based concept annotations, alleviating the need for a human-annotated validation set.

cs.LG↗

arXiv2024

Stochastic Concept Bottleneck Models

Concept Bottleneck Models (CBMs) have emerged as a promising interpretable method whose final prediction is based on intermediate, human-understandable concepts rather than the raw input. Through time-consuming manual interventions, a user can correct wrongly predicted concept values to enhance the model's downstream performance. We propose Stochastic Concept Bottleneck Models (SCBMs), a novel approach that models concept dependencies. In SCBMs, a single-concept intervention affects all correlated concepts, thereby improving intervention effectiveness. Unlike previous approaches that model the concept relations via an autoregressive structure, we introduce an explicit, distributional parameterization that allows SCBMs to retain the CBMs' efficient training and inference procedure. Additionally, we leverage the parameterization to derive an effective intervention strategy based on the confidence region. We show empirically on synthetic tabular and natural image datasets that our approach improves intervention effectiveness significantly. Notably, we showcase the versatility and usability of SCBMs by examining a setting with CLIP-inferred concepts, alleviating the need for manual concept annotations.

cs.LG↗

arXiv2024

Structured Generations: Using Hierarchical Clusters to guide Diffusion Models

This paper introduces Diffuse-TreeVAE, a deep generative model that integrates hierarchical clustering into the framework of Denoising Diffusion Probabilistic Models (DDPMs). The proposed approach generates new images by sampling from a root embedding of a learned latent tree VAE-based structure, it then propagates through hierarchical paths, and utilizes a second-stage DDPM to refine and generate distinct, high-quality images for each data cluster. The result is a model that not only improves image clarity but also ensures that the generated samples are representative of their respective clusters, addressing the limitations of previous VAE-based methods and advancing the state of clustering-based generative modeling.

cs.LG↗

arXiv2024

scTree: Discovering Cellular Hierarchies in the Presence of Batch Effects in scRNA-seq Data

We propose a novel method, scTree, for single-cell Tree Variational Autoencoders, extending a hierarchical clustering approach to single-cell RNA sequencing data. scTree corrects for batch effects while simultaneously learning a tree-structured data representation. This VAE-based method allows for a more in-depth understanding of complex cellular landscapes independently of the biasing effects of batches. We show empirically on seven datasets that scTree discovers the underlying clusters of the data and the hierarchical relations between them, as well as outperforms established baseline methods across these datasets. Additionally, we analyze the learned hierarchy to understand its biological relevance, thus underpinning the importance of integrating batch correction directly into the clustering procedure.

cs.LG↗

arXiv2024

On the Properties and Estimation of Pointwise Mutual Information Profiles

The pointwise mutual information profile, or simply profile, is the distribution of pointwise mutual information for a given pair of random variables. One of its important properties is that its expected value is precisely the mutual information between these random variables. In this paper, we analytically describe the profiles of multivariate normal distributions and introduce a novel family of distributions, Bend and Mix Models, for which the profile can be accurately estimated using Monte Carlo methods. We then show how Bend and Mix Models can be used to study the limitations of existing mutual information estimators, investigate the behavior of neural critics used in variational estimators, and understand the effect of experimental outliers on mutual information estimation. Finally, we show how Bend and Mix Models can be used to obtain model-based Bayesian estimates of mutual information, suitable for problems with available domain expertise in which uncertainty quantification is necessary.

stat.ML↗

arXiv2024

Benchmarking the Fairness of Image Upsampling Methods

Recent years have witnessed a rapid development of deep generative models for creating synthetic media, such as images and videos. While the practical applications of these models in everyday tasks are enticing, it is crucial to assess the inherent risks regarding their fairness. In this work, we introduce a comprehensive framework for benchmarking the performance and fairness of conditional generative models. We develop a set of metrics$\unicode{x2013}$inspired by their supervised fairness counterparts$\unicode{x2013}$to evaluate the models on their fairness and diversity. Focusing on the specific application of image upsampling, we create a benchmark covering a wide variety of modern upsampling methods. As part of the benchmark, we introduce UnfairFace, a subset of FairFace that replicates the racial distribution of common large-scale face datasets. Our empirical study highlights the importance of using an unbiased training set and reveals variations in how the algorithms respond to dataset imbalances. Alarmingly, we find that none of the considered methods produces statistically fair and diverse results. All experiments can be reproduced using our provided repository.

cs.CV↗

arXiv2024

What Does Evaluation of Explainable Artificial Intelligence Actually Tell Us? A Case for Compositional and Contextual Validation of XAI Building Blocks

Despite significant progress, evaluation of explainable artificial intelligence remains elusive and challenging. In this paper we propose a fine-grained validation framework that is not overly reliant on any one facet of these sociotechnical systems, and that recognises their inherent modular structure: technical building blocks, user-facing explanatory artefacts and social communication protocols. While we concur that user studies are invaluable in assessing the quality and effectiveness of explanation presentation and delivery strategies from the explainees' perspective in a particular deployment context, the underlying explanation generation mechanisms require a separate, predominantly algorithmic validation strategy that accounts for the technical and human-centred desiderata of their (numerical) outputs. Such a comprehensive sociotechnical utility-based evaluation framework could allow to systematically reason about the properties and downstream influence of different building blocks from which explainable artificial intelligence systems are composed -- accounting for a diverse range of their engineering and social aspects -- in view of the anticipated use case.

cs.HC↗

arXiv2023

Interpretable and intervenable ultrasonography-based machine learning models for pediatric appendicitis

Appendicitis is among the most frequent reasons for pediatric abdominal surgeries. Previous decision support systems for appendicitis have focused on clinical, laboratory, scoring, and computed tomography data and have ignored abdominal ultrasound, despite its noninvasive nature and widespread availability. In this work, we present interpretable machine learning models for predicting the diagnosis, management and severity of suspected appendicitis using ultrasound images. Our approach utilizes concept bottleneck models (CBM) that facilitate interpretation and interaction with high-level concepts understandable to clinicians. Furthermore, we extend CBMs to prediction problems with multiple views and incomplete concept sets. Our models were trained on a dataset comprising 579 pediatric patients with 1709 ultrasound images accompanied by clinical and laboratory data. Results show that our proposed method enables clinicians to utilize a human-understandable and intervenable predictive model without compromising performance or requiring time-consuming image annotation when deployed. For predicting the diagnosis, the extended multiview CBM attained an AUROC of 0.80 and an AUPR of 0.92, performing comparably to similar black-box neural networks trained and tested on the same dataset.

cs.LG↗

arXiv2023

Differentiable Random Partition Models

Partitioning a set of elements into an unknown number of mutually exclusive subsets is essential in many machine learning problems. However, assigning elements, such as samples in a dataset or neurons in a network layer, to an unknown and discrete number of subsets is inherently non-differentiable, prohibiting end-to-end gradient-based optimization of parameters. We overcome this limitation by proposing a novel two-step method for inferring partitions, which allows its usage in variational inference tasks. This new approach enables reparameterized gradients with respect to the parameters of the new random partition model. Our method works by inferring the number of elements per subset and, second, by filling these subsets in a learned order. We highlight the versatility of our general-purpose approach on three different challenging experiments: variational clustering, inference of shared and independent generative factors under weak supervision, and multitask learning.

cs.LG↗

arXiv2023

This Reads Like That: Deep Learning for Interpretable Natural Language Processing

Prototype learning, a popular machine learning method designed for inherently interpretable decisions, leverages similarities to learned prototypes for classifying new data. While it is mainly applied in computer vision, in this work, we build upon prior research and further explore the extension of prototypical networks to natural language processing. We introduce a learned weighted similarity measure that enhances the similarity computation by focusing on informative dimensions of pre-trained sentence embeddings. Additionally, we propose a post-hoc explainability mechanism that extracts prediction-relevant words from both the prototype and input sentences. Finally, we empirically demonstrate that our proposed method not only improves predictive performance on the AG News and RT Polarity datasets over a previous prototype-based approach, but also improves the faithfulness of explanations compared to rationale-based recurrent convolutions.

cs.CL↗

arXiv2023

Anomaly Detection in Echocardiograms with Dynamic Variational Trajectory Models

We propose a novel anomaly detection method for echocardiogram videos. The introduced method takes advantage of the periodic nature of the heart cycle to learn three variants of a variational latent trajectory model (TVAE). While the first two variants (TVAE-C and TVAE-R) model strict periodic movements of the heart, the third (TVAE-S) is more general and allows shifts in the spatial representation throughout the video. All models are trained on the healthy samples of a novel in-house dataset of infant echocardiogram videos consisting of multiple chamber views to learn a normative prior of the healthy population. During inference, maximum a posteriori (MAP) based anomaly detection is performed to detect out-of-distribution samples in our dataset. The proposed method reliably identifies severe congenital heart defects, such as Ebstein's Anomaly or Shone-complex. Moreover, it achieves superior performance over MAP-based anomaly detection with standard variational autoencoders when detecting pulmonary hypertension and right ventricular dilation. Finally, we demonstrate that the proposed method enables interpretable explanations of its output through heatmaps highlighting the regions corresponding to anomalous heart structures.

cs.LG↗

arXiv2023

Beyond Normal: On the Evaluation of Mutual Information Estimators

Mutual information is a general statistical dependency measure which has found applications in representation learning, causality, domain generalization and computational biology. However, mutual information estimators are typically evaluated on simple families of probability distributions, namely multivariate normal distribution and selected distributions with one-dimensional random variables. In this paper, we show how to construct a diverse family of distributions with known ground-truth mutual information and propose a language-independent benchmarking platform for mutual information estimators. We discuss the general applicability and limitations of classical and neural estimators in settings involving high dimensions, sparse interactions, long-tailed distributions, and high mutual information. Finally, we provide guidelines for practitioners on how to select appropriate estimator adapted to the difficulty of problem considered and issues one needs to consider when applying an estimator to a new data set.

stat.ML↗

arXiv2023

M(otion)-mode Based Prediction of Ejection Fraction using Echocardiograms

Early detection of cardiac dysfunction through routine screening is vital for diagnosing cardiovascular diseases. An important metric of cardiac function is the left ventricular ejection fraction (EF), where lower EF is associated with cardiomyopathy. Echocardiography is a popular diagnostic tool in cardiology, with ultrasound being a low-cost, real-time, and non-ionizing technology. However, human assessment of echocardiograms for calculating EF is time-consuming and expertise-demanding, raising the need for an automated approach. In this work, we propose using the M(otion)-mode of echocardiograms for estimating the EF and classifying cardiomyopathy. We generate multiple artificial M-mode images from a single echocardiogram and combine them using off-the-shelf model architectures. Additionally, we extend contrastive learning (CL) to cardiac imaging to learn meaningful representations from exploiting structures in unlabeled data allowing the model to achieve high accuracy, even with limited annotations. Our experiments show that the supervised setting converges with only ten modes and is comparable to the baseline method while bypassing its cumbersome training process and being computationally much more efficient. Furthermore, CL using M-mode images is helpful for limited data scenarios, such as having labels for only 200 patients, which is common in medical applications.

eess.IV↗

arXiv2023

(Un)reasonable Allure of Ante-hoc Interpretability for High-stakes Domains: Transparency Is Necessary but Insufficient for Comprehensibility

Ante-hoc interpretability has become the holy grail of explainable artificial intelligence for high-stakes domains such as healthcare; however, this notion is elusive, lacks a widely-accepted definition and depends on the operational context. It can refer to predictive models whose structure adheres to domain-specific constraints, or ones that are inherently transparent. The latter conceptualisation assumes observers who judge this quality, whereas the former presupposes them to have technical and domain expertise (thus alienating other groups of explainees). Additionally, the distinction between ante-hoc interpretability and the less desirable post-hoc explainability, which refers to methods that construct a separate explanatory model, is vague given that transparent predictive models may still require (post-)processing to yield suitable explanatory insights. Ante-hoc interpretability is thus an overloaded concept that comprises a range of implicit properties, which we unpack in this paper to better understand what is needed for its safe adoption across high-stakes domains. To this end, we outline modelling and explaining desiderata that allow us to navigate its distinct realisations in view of the envisaged application and audience.

cs.LG↗

arXiv2023

On the Identifiability and Estimation of Causal Location-Scale Noise Models

We study the class of location-scale or heteroscedastic noise models (LSNMs), in which the effect $Y$ can be written as a function of the cause $X$ and a noise source $N$ independent of $X$, which may be scaled by a positive function $g$ over the cause, i.e., $Y = f(X) + g(X)N$. Despite the generality of the model class, we show the causal direction is identifiable up to some pathological cases. To empirically validate these theoretical findings, we propose two estimators for LSNMs: an estimator based on (non-linear) feature maps, and one based on neural networks. Both model the conditional distribution of $Y$ given $X$ as a Gaussian parameterized by its natural parameters. When the feature maps are correctly specified, we prove that our estimator is jointly concave, and a consistent estimator for the cause-effect identification task. Although the the neural network does not inherit those guarantees, it can fit functions of arbitrary complexity, and reaches state-of-the-art performance across benchmarks.

stat.ML↗

arXiv2023

Signal Is Harder To Learn Than Bias: Debiasing with Focal Loss

Spurious correlations are everywhere. While humans often do not perceive them, neural networks are notorious for learning unwanted associations, also known as biases, instead of the underlying decision rule. As a result, practitioners are often unaware of the biased decision-making of their classifiers. Such a biased model based on spurious correlations might not generalize to unobserved data, leading to unintended, adverse consequences. We propose Signal is Harder (SiH), a variational-autoencoder-based method that simultaneously trains a biased and unbiased classifier using a novel, disentangling reweighting scheme inspired by the focal loss. Using the unbiased classifier, SiH matches or improves upon the performance of state-of-the-art debiasing methods. To improve the interpretability of our technique, we propose a perturbation scheme in the latent space for visualizing the bias that helps practitioners become aware of the sources of spurious correlations.

cs.LG↗

arXiv2023

Learning Group Importance using the Differentiable Hypergeometric Distribution

Partitioning a set of elements into subsets of a priori unknown sizes is essential in many applications. These subset sizes are rarely explicitly learned - be it the cluster sizes in clustering applications or the number of shared versus independent generative latent factors in weakly-supervised learning. Probability distributions over correct combinations of subset sizes are non-differentiable due to hard constraints, which prohibit gradient-based optimization. In this work, we propose the differentiable hypergeometric distribution. The hypergeometric distribution models the probability of different group sizes based on their relative importance. We introduce reparameterizable gradients to learn the importance between groups and highlight the advantage of explicitly learning the size of subsets in two typical applications: weakly-supervised learning and clustering. In both applications, we outperform previous approaches, which rely on suboptimal heuristics to model the unknown size of groups.

cs.LG↗

arXiv2023

Identifiability Results for Multimodal Contrastive Learning

Contrastive learning is a cornerstone underlying recent progress in multi-view and multimodal learning, e.g., in representation learning with image/caption pairs. While its effectiveness is not yet fully understood, a line of recent work reveals that contrastive learning can invert the data generating process and recover ground truth latent factors shared between views. In this work, we present new identifiability results for multimodal contrastive learning, showing that it is possible to recover shared factors in a more general setup than the multi-view setting studied previously. Specifically, we distinguish between the multi-view setting with one generative mechanism (e.g., multiple cameras of the same type) and the multimodal setting that is characterized by distinct mechanisms (e.g., cameras and microphones). Our work generalizes previous identifiability results by redefining the generative process in terms of distinct mechanisms with modality-specific latent variables. We prove that contrastive learning can block-identify latent factors shared between modalities, even when there are nontrivial dependencies between factors. We empirically verify our identifiability results with numerical simulations and corroborate our findings on a complex multimodal dataset of image/text pairs. Zooming out, our work provides a theoretical basis for multimodal representation learning and explains in which settings multimodal contrastive learning can be effective in practice.

cs.LG↗