arXiv subjects

Julia M. Yeomans

Publications and source records attributed to Julia M. Yeomans.

At least 91 records · Page 5Linked to original sources

arXiv2014

Active nematic materials with substrate friction

Active turbulence in dense active systems is characterized by high vorticity on a length scale that is large compared to that of individual entities. We describe the properties of active turbulence as momentum propagation is screened by frictional damping. As friction is increased, the spacing between the walls in the nematic director field decreases as a consequence of the more rapid velocity decays. This leads to, first, a regime with more walls and an increased number of topological defects, and then to a jammed state in which the walls deliminate bands of opposing flow, analogous to the shear bands observed in passive complex fluids.

cond-mat.soft↗

arXiv2014

Biphasic, Lyotropic, Active Nematics

We perform dynamical simulations of a two-dimensional active nematic fluid in coexistence with an isotropic fluid. Drops of active nematic become elongated, and an effective anchoring develops at the nematic-isotropic interface. The activity also causes an undulatory instability of the interface. This results in defects of positive topological charge being ejected into the nematic, leaving the interface with a diffuse negative charge. Quenching the active lyotropic fluid results in a steady state in which phase-separating domains are elongated and then torn apart by active stirring.

cond-mat.soft↗

arXiv2014

Stirring by swimmers in confined microenvironments

We consider the tracer diffusion $D_{rr}$ that arises from the run-and-tumble motion of low Reynolds number swimmers, such as bacteria. In unbounded dilute suspensions, where the dipole swimmers move in uncorrelated runs of length $λ$, an exact solution showed that $D_{rr}$ is independent of $λ$. Here we verify this result in numerical simulations for a particular model swimmer, the spherical squirmer. We also note that in confined microenvironments, such as microscopic droplets, microfluidic devices and bacterial microzones in marine ecosystems, the size of the system can be comparable to $λ$. We show that this effect alone reduces the value of $D_{rr}$ in comparison to its bulk value, and predict a scaling form for its relative decrease.

cond-mat.soft↗

arXiv2014

Vorticity, Defects and Correlations in Active Turbulence

We describe a numerical investigation of a continuum model of an active nematic, concentrating on the regime of active turbulence. Results are presented for the effect of three parameters, activity, elastic constant and rotational diffusion constant, on the order parameter and flow fields. Defects and distortions in the director field act as sources of vorticity, and thus vorticity is strongly correlated to the director field. In particular the characteristic length of decay of vorticity and order parameter correlations is controlled by the defect density. By contrast the decay of velocity correlations is determined by a balance between activity and dissipation. We highlight the role of microscopic flow generation mechanisms in determining the flow patterns and characteristic scales of active turbulence and contrast the behaviour of extensile and contractile active nematics.

cond-mat.soft↗

arXiv2013

Instabilities and Topological Defects in Active Nematics

We study a continuum model of an extensile active nematic to show that mesoscale turbulence develops in two stages: (i) ordered regions undergo an intrinsic hydrodynamic instability generating walls, lines of stong bend deformations, (ii) the walls relax by forming oppositely charged pairs of defects. Both creation and annihilation of defect pairs reinstate nematic regions which undergo further instabilities, leading to a dynamic steady state. We compare this with the development of active turbulence in a contractile active nematic.

cond-mat.soft↗

arXiv2013

Viscous fingering at ultralow interfacial tension

We experimentally study the viscous fingering instability in a fluid-fluid phase separated colloid-polymer mixture by means of laser scanning confocal microscopy and microfluidics. We focus on three aspects of the instability. (i) The interface between the two demixed phases has an ultralow surface tension, such that we can address the role of thermal interface fluctuations. (ii) We image the interface in three dimensions allowing us to study the interplay between interface curvature and flow. (iii) The displacing fluid wets all walls completely, in contrast to traditional viscous fingering experiments, in which the displaced fluid wets the walls. We also perform lattice Boltzmann simulations, which help to interpret the experimental observations.

cond-mat.soft↗

arXiv2013

Enhanced motility of a microswimmer in rigid and elastic confinement

We analyse the effect of confining rigid and elastic boundaries on the motility of a model dipolar microswimmer. Flexible boundaries are deformed by the velocity field of the swimmer in such a way that the motility of both extensile and contractile swimmers is enhanced. The magnitude of the increase in swimming velocity is controlled by the ratio of the swimmer-advection and elastic timescales, and the dipole moment of the swimmer. We explain our results by considering swimming between inclined rigid boundaries.

cond-mat.soft↗

arXiv2013

Fluid mixing by curved trajectories of microswimmers

We consider the tracer diffusion $D_{rr}$ that arises from the run-and-tumble motion of low Reynolds number swimmers, such as bacteria. Assuming a dilute suspension, where the bacteria move in uncorrelated runs of length $λ$, we obtain an exact expression for $D_{rr}$ for dipolar swimmers in three dimensions, hence explaining the surprising result that this is independent of $λ$. We compare $D_{rr}$ to the contribution to tracer diffusion from entrainment.

cond-mat.soft↗

arXiv2013

Velocity Correlations in an Active Nematic

The flow properties of a continuum model for an active nematic is studied and compared with recent experiments on suspensions of microtubule bundles and molecular motors. The velocity correlation length is found to be independent of the strength of the activity while the characteristic velocity scale increases monotonically as the activity is increased, both in agreement with the experimental observations. We interpret our results in terms of the creation and annihilation dynamics of a gas of topological defects.

cond-mat.soft↗

arXiv2013

Modelling unidirectional liquid spreading on slanted microposts

A lattice Boltzmann algorithm is used to simulate the slow spreading of drops on a surface patterned with slanted micro-posts. Gibb's pinning of the interface on the sides or top of the posts leads to unidirectional spreading over a wide range of contact angles and inclination angles of the posts. Regimes for spreading in no, one or two directions are identified, and shown to agree well with a two-dimensional theory proposed in Chu, Xiao and Wang (Nature Materials, 9, 413). A more detailed numerical analysis of the contact line shapes allows us to understand deviations from the two dimensional model, and to identify the shapes of the pinned interfaces.

cond-mat.soft↗

arXiv2012

Confined active nematic flow in cylindrical capillaries

We use numerical modelling to study the flow patterns of an active nematic confined in a cylindrical capillary, considering both planar and homeotropic boundary conditions. We find that active flow emerges not only along the capillary axis but also within the plane of the capillary, where radial vortices are formed. If topological defects are imposed by the boundary conditions, they act as local pumps driving the flow. At higher activity we demonstrate escape of the active defects and flow into the third dimension, indicating the importance of dimensionality in active materials. We argue that measuring the magnitude of the active flow as a function of the capillary radius allows determination of a value for the activity coefficient.

cond-mat.soft↗

arXiv2012

Anisotropic wetting and de-wetting of drops on substrates patterned with polygonal posts

We present results showing how water drops, produced by ink-jet printing, spread on surfaces patterned with lattices of diamond or triangular posts. Considering post widths typically ~7 m and lattice spacings between 15-40 m, we observe drop shapes with 3,4 and 6-fold symmetry, depending on both the symmetry of the lattice and the shape of the posts. This is a result of the different mechanisms of interface pinning and depinning which depend on the direction of the contact line motion with respect to the post shape. Lattice Boltzmann simulations are used to describe these mechanisms in detail for triangular posts. We also follow the motion of the contact line as the drops evaporate showing that they tend to return to their original shape. To explain this we show that the easy direction for movement is the same for spreading and drying drops. We compare the behaviour of small drops with that of larger drops created by jetting several drops at the same position. We find that the contact line motion is unexpectedly insensitive to drop volume, even when a spherical cap of fluid forms above the posts. The findings are relevant to microfluidic applications and to the control of drop shapes in ink-jet printing.

cond-mat.soft↗

arXiv2012

Fluid transport by individual microswimmers

We discuss the path of a tracer particle as a microswimmer moves past on an infinite straight trajectory. If the tracer is sufficiently far from the path of the swimmer it moves in a closed loop. As the initial distance between the tracer and the path of the swimmer $ρ$ decreases, the tracer is displaced a small distance backwards (relative to the direction of the swimmer velocity). For much smaller tracer-swimmer separations, however, the tracer displacement becomes positive and diverges as $ρ\to 0$. To quantify this behaviour we calculate the Darwin drift, the total volume swept out by a material sheet of tracers, initially perpendicular to the swimmer path, during the swimmer motion. We find that the drift can be written as the sum of a {\em universal} term which depends on the quadrupolar flow field of the swimmer, together with a non-universal contribution given by the sum of the volumes of the swimmer and its wake. The formula is compared to exact results for the squirmer model and to numerical calculations for a more realistic model swimmer.

physics.flu-dyn↗

arXiv2012

Meso-scale turbulence in living fluids

Turbulence is ubiquitous, from oceanic currents to small-scale biological and quantum systems. Self-sustained turbulent motion in microbial suspensions presents an intriguing example of collective dynamical behavior amongst the simplest forms of life, and is important for fluid mixing and molecular transport on the microscale. The mathematical characterization of turbulence phenomena in active non-equilibrium fluids proves even more difficult than for conventional liquids or gases. It is not known which features of turbulent phases in living matter are universal or system-specific, or which generalizations of the Navier-Stokes equations are able to describe them adequately. Here, we combine experiments, particle simulations, and continuum theory to identify the statistical properties of self-sustained meso-scale turbulence in active systems. To study how dimensionality and boundary conditions affect collective bacterial dynamics, we measured energy spectra and structure functions in dense Bacillus subtilis suspensions in quasi-2D and 3D geometries. Our experimental results for the bacterial flow statistics agree well with predictions from a minimal model for self-propelled rods, suggesting that at high concentrations the collective motion of the bacteria is dominated by short-range interactions. To provide a basis for future theoretical studies, we propose a minimal continuum model for incompressible bacterial flow. A detailed numerical analysis of the 2D case shows that this theory can reproduce many of the experimentally observed features of self-sustained active turbulence.

cond-mat.soft↗

arXiv2012

Anisotropic imbibition on surfaces patterned with polygonal posts

We present and interpret lattice Boltzmann simulations of thick films spreading on surfaces patterned with polygonal posts. We show that the mechanism of pinning and depinning differs with the direction of advance, and demonstrate that this leads to anisotropic spreading within a certain range of material contact angles.

cond-mat.soft↗

arXiv2012

Surface evolver simulations of drops on microposts

An important feature in the design of superhydrophobic surfaces is their robustness against collapse from the Cassie-Baxter configuration to the Wenzel state. Upon such a transition a surface loses its properties of low adhesion and friction. We describe how to adapt the Surface Evolver algorithm to predict the parameters and mechanism of the collapse transition on posts of arbitrary shape. In particular, contributions to the free energy evaluated over the solid-liquid surface are reduced to line integrals to give good convergence. The algorithm is validated for straight, vertical and inclined, posts. Numerical results for curved posts with a horizontal section at their ends show that these are more efficient in stabilising the Cassie state than straight posts, and identify whether the interface first depins from the post sides or the post tips.

cond-mat.soft↗

arXiv2012

A circle swimmer at low Reynolds number

Swimming in circles occurs in a variety of situations at low Reynolds number. Here we propose a simple model for a swimmer that undergoes circular motion, generalising the model of a linear swimmer proposed by Najafi and Golestanian (Phys. Rev. E 69, 062901 (2004)). Our model consists of three solid spheres arranged in a triangular configuration, joined by two links of time-dependent length. For small strokes, we discuss the motion of the swimmer as a function of the separation angle between its links. We find that swimmers describe either clockwise or anticlockwise circular motion depending on the tilting angle in a non-trivial manner. The symmetry of the swimmer leads to a quadrupolar decay of the far flow field. We discuss the potential extensions and experimental realisation of our model.

cond-mat.soft↗

arXiv2012

Easier sieving through narrower pores: fluctuations and barrier crossing in flow-driven polymer translocation

We show that the injection of polymer chains into nanochannels becomes easier as the channel becomes narrower. This counter intuitive result arises because of a decrease in the diffusive time scale of the chains with increasing confinement. The results are obtained by extending the de Gennes blob model of confined polymers, and confirmed by hybrid molecular dynamics - lattice-Boltzmann simulations.

cond-mat.soft↗