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Julie A. Huber

Publications and source records attributed to Julie A. Huber.

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The Emergence of Life in the Light of Evolution

The origin of life is often framed primarily as a chemical problem, yet life s defining feature is evolution. Advances in geochemistry, prebiotic chemistry and molecular biology have suggested diverse scenarios for the emergence of genomes, metabolism and cellular compartments on the early Earth, but most of these models ignore the relevance of a population genetics perspective. Here, we argue that origin of life research must expand from asking simply how life began to exploring how it evolved from pre biological systems. Synthesizing evidence from comparative genomics, phylogenetics, biochemistry, and geoscience, we emphasize that the last universal common ancestor (LUCA) was already a complex, ecologically adapted population of cells far removed from the starting point of life, implying a deep, pre LUCA evolutionary history. We highlight how population genetics, ecology, and synthetic biology can constrain origin of life scenarios by making explicit the roles of selection, drift, mutation, horizontal gene transfer, parasites and compartmentalization in shaping early communities. Finally, we outline an evolutionary research agenda spanning proto metabolic autocatalytic networks, protocells, and the emergence of translation and the transition to DNA genomes, such that qualitative models can be formalized through evolution driven hypotheses testable with theory and laboratory experiments, including those with synthetic cells.

q-bio.PE

Oxidation Processes Diversify the Metabolic Menu on Enceladus

The Cassini mission to the Saturn system discovered a plume of ice grains and water vapor erupting from cracks on the icy surface of the satellite Enceladus. This moon has a global ocean in contact with a rocky core beneath its icy exterior, making it a promising location to search for evidence of extraterrestrial life in the solar system. The previous detection of H$_2$ in the plume indicates that there is free energy available for methanogenesis, the metabolic reaction of H$_2$ with CO$_2$ to form methane and water. Additional metabolic pathways could provide sources of energy in Enceladus' ocean, but require the use of other oxidants that have not been detected in the plume. Here, we perform chemical modeling to determine how the production of radiolytic O$_2$ and H$_2$O$_2$, and abiotic redox chemistry in the ocean and rocky core, contribute to chemical disequilibria that could support metabolic processes in Enceladus' ocean. We consider three possible cases for ocean redox chemistry: Case I in which reductants are not present in appreciable amounts and oxidants accumulate over time, and Cases II and III in which aqueous reductants or seafloor minerals, respectively, convert O$_2$ and H$_2$O$_2$ to SO$_4^{2-}$ and ferric oxyhydroxides. We calculate the upper limits on the concentrations of oxidants and chemical energy available for metabolic reactions in all three cases, neglecting additional abiotic reactions. For all three cases, we find that many aerobic and anaerobic metabolic reactions used by microbes on Earth could meet the minimum free energy threshold required for terrestrial life to convert ADP to ATP, as well as sustain positive cell density values within the Enceladus seafloor and/or ocean. These findings indicate that oxidant production and oxidation chemistry could contribute to supporting possible life and a metabolically diverse microbial community on Enceladus.

astro-ph.EP