arXiv subjects

Jun Kong

Publications and source records attributed to Jun Kong.

At least 19 recordsLinked to original sources

arXiv2026

Kairos: Lightweight Testing Framework for Timing-Induced Interaction Failures in LTE and 5G Core Networks

As cellular core networks evolve toward distributed and cloud-native architectures, control-plane interactions become more intricate and bring new challenges. Among these challenges, we find that introducing specific timing between two control-plane interactions can cause network function crash, which we define as timing-induced interaction failures. Prior research primarily addresses identifying malformed inputs and specification violations, while timing-induced interaction failures remain largely unexplored. In this paper, we conduct a systematic study of timing-induced interaction failures in LTE and 5G core networks. First, we establish a taxonomy of control-plane interaction patterns and analyze the failure modes of each pattern. Then, we design and implement Kairos, a lightweight testing framework to expose timing-induced interaction failures without analyzing cellular standard documents. Evaluating Kairos on two open source and two commercial LTE and 5G core networks, we uncover 20 new vulnerabilities and reproduce 34 existing issues. Our results show that timing-induced interaction failures are prevalent in LTE and 5G core networks and should be explicitly considered in future specifications.

cs.NI↗

arXiv2025

Sample-aware Adaptive Structured Pruning for Large Language Models

Large language models (LLMs) have achieved outstanding performance in natural language processing, but enormous model sizes and high computational costs limit their practical deployment. Structured pruning can effectively reduce the resource demands for deployment by removing redundant model parameters. However, the randomly selected calibration data and fixed single importance estimation metrics in existing structured pruning methods lead to degraded performance of pruned models. This study introduces AdaPruner, a sample-aware adaptive structured pruning framework for LLMs, aiming to optimize the calibration data and importance estimation metrics in the structured pruning process. Specifically, AdaPruner effectively removes redundant parameters from LLMs by constructing a structured pruning solution space and then employing Bayesian optimization to adaptively search for the optimal calibration data and importance estimation metrics. Experimental results show that the AdaPruner outperforms existing structured pruning methods on a family of LLMs with varying pruning ratios, demonstrating its applicability and robustness. Remarkably, at a 20\% pruning ratio, the model pruned with AdaPruner maintains 97\% of the performance of the unpruned model.

cs.CL↗

arXiv2024

Temporal Action Localization with Cross Layer Task Decoupling and Refinement

Temporal action localization (TAL) involves dual tasks to classify and localize actions within untrimmed videos. However, the two tasks often have conflicting requirements for features. Existing methods typically employ separate heads for classification and localization tasks but share the same input feature, leading to suboptimal performance. To address this issue, we propose a novel TAL method with Cross Layer Task Decoupling and Refinement (CLTDR). Based on the feature pyramid of video, CLTDR strategy integrates semantically strong features from higher pyramid layers and detailed boundary-aware boundary features from lower pyramid layers to effectively disentangle the action classification and localization tasks. Moreover, the multiple features from cross layers are also employed to refine and align the disentangled classification and regression results. At last, a lightweight Gated Multi-Granularity (GMG) module is proposed to comprehensively extract and aggregate video features at instant, local, and global temporal granularities. Benefiting from the CLTDR and GMG modules, our method achieves state-of-the-art performance on five challenging benchmarks: THUMOS14, MultiTHUMOS, EPIC-KITCHENS-100, ActivityNet-1.3, and HACS. Our code and pre-trained models are publicly available at: https://github.com/LiQiang0307/CLTDR-GMG.

cs.CV↗

arXiv2024

NACNet: A Histology Context-aware Transformer Graph Convolution Network for Predicting Treatment Response to Neoadjuvant Chemotherapy in Triple Negative Breast Cancer

Neoadjuvant chemotherapy (NAC) response prediction for triple negative breast cancer (TNBC) patients is a challenging task clinically as it requires understanding complex histology interactions within the tumor microenvironment (TME). Digital whole slide images (WSIs) capture detailed tissue information, but their giga-pixel size necessitates computational methods based on multiple instance learning, which typically analyze small, isolated image tiles without the spatial context of the TME. To address this limitation and incorporate TME spatial histology interactions in predicting NAC response for TNBC patients, we developed a histology context-aware transformer graph convolution network (NACNet). Our deep learning method identifies the histopathological labels on individual image tiles from WSIs, constructs a spatial TME graph, and represents each node with features derived from tissue texture and social network analysis. It predicts NAC response using a transformer graph convolution network model enhanced with graph isomorphism network layers. We evaluate our method with WSIs of a cohort of TNBC patient (N=105) and compared its performance with multiple state-of-the-art machine learning and deep learning models, including both graph and non-graph approaches. Our NACNet achieves 90.0% accuracy, 96.0% sensitivity, 88.0% specificity, and an AUC of 0.82, through eight-fold cross-validation, outperforming baseline models. These comprehensive experimental results suggest that NACNet holds strong potential for stratifying TNBC patients by NAC response, thereby helping to prevent overtreatment, improve patient quality of life, reduce treatment cost, and enhance clinical outcomes, marking an important advancement toward personalized breast cancer treatment.

cs.CV↗

arXiv2024

Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification

In digital pathology, the multiple instance learning (MIL) strategy is widely used in the weakly supervised histopathology whole slide image (WSI) classification task where giga-pixel WSIs are only labeled at the slide level. However, existing attention-based MIL approaches often overlook contextual information and intrinsic spatial relationships between neighboring tissue tiles, while graph-based MIL frameworks have limited power to recognize the long-range dependencies. In this paper, we introduce the integrative graph-transformer framework that simultaneously captures the context-aware relational features and global WSI representations through a novel Graph Transformer Integration (GTI) block. Specifically, each GTI block consists of a Graph Convolutional Network (GCN) layer modeling neighboring relations at the local instance level and an efficient global attention model capturing comprehensive global information from extensive feature embeddings. Extensive experiments on three publicly available WSI datasets: TCGA-NSCLC, TCGA-RCC and BRIGHT, demonstrate the superiority of our approach over current state-of-the-art MIL methods, achieving an improvement of 1.0% to 2.6% in accuracy and 0.7%-1.6% in AUROC.

eess.IV↗

arXiv2023

Expanding the Pressure Frontier in Gr\"uneisen Parameter Measurement: Study of Sodium Chloride

The Gr\"uneisen parameter ({\gamma}) is crucial for determining many thermal properties, including the anharmonic effect, thermostatistics, and equation of state (EOS) of materials. However, the isentropic adiabatic compression conditions required to measure the Gr\"uneisen parameter under high pressure are difficult to achieve. Thus, direct experimental Gr\"uneisen parameter data in a wide range of pressures is sparse. In this work, we developed a new device that can apply pressure (up to tens of GPa) with an extremely short time about 0.5 ms, confidently achieving isentropic adiabatic compression. Then, we applied our new technique to sodium chloride and measured its Gr\"uneisen parameter, which conforms to previous theoretical predictions. According to our obtained sodium chloride Gr\"uneisen parameters, the calculated Hugoniot curve of the NaCl B1 phase appears up to 20 GPa and 960 K, which compares very well with the shock compression experiment data by Fritz et al. and other calculation works. Our results suggest that this new method can reliably measure the Gr\"uneisen parameter of even more materials, which is significant for researching the equation of state in substances.

cond-mat.mtrl-sci↗

arXiv2022

Private Data Valuation and Fair Payment in Data Marketplaces

Data valuation is an essential task in a data marketplace. It aims at fairly compensating data owners for their contribution. There is increasing recognition in the machine learning community that the Shapley value -- a foundational profit-sharing scheme in cooperative game theory -- has major potential to value data, because it uniquely satisfies basic properties for fair credit allocation and has been shown to be able to identify data sources that are useful or harmful to model performance. However, calculating the Shapley value requires accessing original data sources. It still remains an open question how to design a real-world data marketplace that takes advantage of the Shapley value-based data pricing while protecting privacy and allowing fair payments. In this paper, we propose the {\em first} prototype of a data marketplace that values data sources based on the Shapley value in a privacy-preserving manner and at the same time ensures fair payments. Our approach is enabled by a suite of innovations on both algorithm and system design. We firstly propose a Shapley value calculation algorithm that can be efficiently implemented via multiparty computation (MPC) circuits. The key idea is to learn a performance predictor that can directly predict model performance corresponding to an input dataset without performing actual training. We further optimize the MPC circuit design based on the structure of the performance predictor. We further incorporate fair payment into the MPC circuit to guarantee that the data that the buyer pays for is exactly the same as the one that has been valuated. Our experimental results show that the proposed new data valuation algorithm is as effective as the original expensive one. Furthermore, the customized MPC protocol is efficient and scalable.

cs.CR↗

arXiv2022

Multi-scale frequency separation network for image deblurring

Image deblurring aims to restore the detailed texture information or structures from blurry images, which has become an indispensable step in many computer vision tasks. Although various methods have been proposed to deal with the image deblurring problem, most of them treated the blurry image as a whole and neglected the characteristics of different image frequencies. In this paper, we present a new method called multi-scale frequency separation network (MSFS-Net) for image deblurring. MSFS-Net introduces the frequency separation module (FSM) into an encoder-decoder network architecture to capture the low- and high-frequency information of image at multiple scales. Then, a cycle-consistency strategy and a contrastive learning module (CLM) are respectively designed to retain the low-frequency information and recover the high-frequency information during deblurring. At last, the features of different scales are fused by a cross-scale feature fusion module (CSFFM). Extensive experiments on benchmark datasets show that the proposed network achieves state-of-the-art performance.

cs.CV↗

arXiv2022

Last-iterate convergence analysis of stochastic momentum methods for neural networks

The stochastic momentum method is a commonly used acceleration technique for solving large-scale stochastic optimization problems in artificial neural networks. Current convergence results of stochastic momentum methods under non-convex stochastic settings mostly discuss convergence in terms of the random output and minimum output. To this end, we address the convergence of the last iterate output (called last-iterate convergence) of the stochastic momentum methods for non-convex stochastic optimization problems, in a way conformal with traditional optimization theory. We prove the last-iterate convergence of the stochastic momentum methods under a unified framework, covering both stochastic heavy ball momentum and stochastic Nesterov accelerated gradient momentum. The momentum factors can be fixed to be constant, rather than time-varying coefficients in existing analyses. Finally, the last-iterate convergence of the stochastic momentum methods is verified on the benchmark MNIST and CIFAR-10 datasets.

math.OC↗

arXiv2021

Image deblurring based on lightweight multi-information fusion network

Recently, deep learning based image deblurring has been well developed. However, exploiting the detailed image features in a deep learning framework always requires a mass of parameters, which inevitably makes the network suffer from high computational burden. To solve this problem, we propose a lightweight multiinformation fusion network (LMFN) for image deblurring. The proposed LMFN is designed as an encoder-decoder architecture. In the encoding stage, the image feature is reduced to various smallscale spaces for multi-scale information extraction and fusion without a large amount of information loss. Then, a distillation network is used in the decoding stage, which allows the network benefit the most from residual learning while remaining sufficiently lightweight. Meanwhile, an information fusion strategy between distillation modules and feature channels is also carried out by attention mechanism. Through fusing different information in the proposed approach, our network can achieve state-of-the-art image deblurring result with smaller number of parameters and outperforms existing methods in model complexity.

cs.CV↗

arXiv2020

HPCC-YNU at SemEval-2020 Task 9: A Bilingual Vector Gating Mechanism for Sentiment Analysis of Code-Mixed Text

It is fairly common to use code-mixing on a social media platform to express opinions and emotions in multilingual societies. The purpose of this task is to detect the sentiment of code-mixed social media text. Code-mixed text poses a great challenge for the traditional NLP system, which currently uses monolingual resources to deal with the problem of multilingual mixing. This task has been solved in the past using lexicon lookup in respective sentiment dictionaries and using a long short-term memory (LSTM) neural network for monolingual resources. In this paper, we (my codalab username is kongjun) present a system that uses a bilingual vector gating mechanism for bilingual resources to complete the task. The model consists of two main parts: the vector gating mechanism, which combines the character and word levels, and the attention mechanism, which extracts the important emotional parts of the text. The results show that the proposed system outperforms the baseline algorithm. We achieved fifth place in Spanglish and 19th place in Hinglish.The code of this paper is availabled at : https://github.com/JunKong5/Semveal2020-task9

cs.CL↗

arXiv2019

Liver Steatosis Segmentation with Deep Learning Methods

Liver steatosis is known as the abnormal accumulation of lipids within cells. An accurate quantification of steatosis area within the liver histopathological microscopy images plays an important role in liver disease diagnosis and trans-plantation assessment. Such a quantification analysis often requires a precise steatosis segmentation that is challenging due to abundant presence of highly overlapped steatosis droplets. In this paper, a deep learning model Mask-RCNN is used to segment the steatosis droplets in clumps. Extended from Faster R-CNN, Mask-RCNN can predict object masks in addition to bounding box detection. With transfer learning, the resulting model is able to segment overlapped steatosis regions at 75.87% by Average Precision, 60.66% by Recall,65.88% by F1-score, and 76.97% by Jaccard index, promising to support liver disease diagnosis and allograft rejection prediction in future clinical practice.

eess.IV↗

arXiv2019

Run-time Parameter Sensitivity Analysis Optimizations

Efficient execution of parameter sensitivity analysis (SA) is critical to allow for its routinely use. The pathology image processing application investigated in this work processes high-resolution whole-slide cancer tissue images from large datasets to characterize and classify the disease. However, the application is parameterized and changes in parameter values may significantly affect its results. Thus, understanding the impact of parameters to the output using SA is important to draw reliable scientific conclusions. The execution of the application is rather compute intensive, and a SA requires it to process the input data multiple times as parameter values are systematically varied. Optimizing this process is then important to allow for SA to be executed with large datasets. In this work, we employ a distributed computing system with novel computation reuse optimizations to accelerate SA. The new computation reuse strategy can maximize reuse even with limited memory availability where previous approaches would not be able to fully take advantage of reuse. The proposed solution was evaluated on an environment with 256 nodes (7168 CPU-cores) attaining a parallel efficiency of over 92%, and improving the previous reuse strategies in up to 2.8x.

cs.DC↗

arXiv2018

Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance

We propose a software platform that integrates methods and tools for multi-objective parameter auto- tuning in tissue image segmentation workflows. The goal of our work is to provide an approach for improving the accuracy of nucleus/cell segmentation pipelines by tuning their input parameters. The shape, size and texture features of nuclei in tissue are important biomarkers for disease prognosis, and accurate computation of these features depends on accurate delineation of boundaries of nuclei. Input parameters in many nucleus segmentation workflows affect segmentation accuracy and have to be tuned for optimal performance. This is a time-consuming and computationally expensive process; automating this step facilitates more robust image segmentation workflows and enables more efficient application of image analysis in large image datasets. Our software platform adjusts the parameters of a nuclear segmentation algorithm to maximize the quality of image segmentation results while minimizing the execution time. It implements several optimization methods to search the parameter space efficiently. In addition, the methodology is developed to execute on high performance computing systems to reduce the execution time of the parameter tuning phase. Our results using three real-world image segmentation workflows demonstrate that the proposed solution is able to (1) search a small fraction (about 100 points) of the parameter space, which contains billions to trillions of points, and improve the quality of segmentation output by 1.20x, 1.29x, and 1.29x, on average; (2) decrease the execution time of a segmentation workflow by up to 11.79x while improving output quality; and (3) effectively use parallel systems to accelerate parameter tuning and segmentation phases.

cs.DC↗

arXiv2018

Clumped Nuclei Segmentation with Adjacent Point Match and Local Shape based Intensity Analysis for Overlapped Nuclei in Fluorescence In-Situ Hybridization Images

Highly clumped nuclei clusters captured in fluorescence in situ hybridization microscopy images are common histology entities under investigations in a wide spectrum of tissue-related biomedical investigations. Due to their large scale in presence, computer based image analysis is used to facilitate such analysis with improved analysis efficiency and reproducibility. To ensure the quality of downstream biomedical analyses, it is essential to segment clustered nuclei with high quality. However, this presents a technical challenge commonly encountered in a large number of biomedical research, as nuclei are often overlapped due to a high cell density. In this paper, we propose an segmentation algorithm that identifies point pair connection candidates and evaluates adjacent point connections with a formulated ellipse fitting quality indicator. After connection relationships are determined, we recover the resulting dividing paths by following points with specific eigenvalues from Hessian in a constrained searching space. We validate our algorithm with 560 image patches from two classes of tumor regions of seven brain tumor patients. Both qualitative and quantitative experimental results suggest that our algorithm is promising for dividing overlapped nuclei in fluorescence in situ hybridization microscopy images widely used in various biomedical research.

cs.CV↗

arXiv2018

Segmentation of Overlapped Steatosis in Whole-Slide Liver Histopathology Microscopy Images

An accurate steatosis quantification with pathology tissue samples is of high clinical importance. However, such pathology measurement is manually made in most clinical practices, subject to severe reader variability due to large sampling bias and poor reproducibility. Although some computerized automated methods are developed to quantify the steatosis regions, they present limited analysis capacity for high resolution whole-slide microscopy images and accurate overlapped steatosis division. In this paper, we propose a method that extracts an individual whole tissue piece at high resolution with minimum background area by estimating tissue bounding box and rotation angle. This is followed by the segmentation and segregation of steatosis regions with high curvature point detection and an ellipse fitting quality assessment method. We validate our method with isolated and overlapped steatosis regions in liver tissue images of 11 patients. The experimental results suggest that our method is promising for enhanced support of steatosis quantization during the pathology review for liver disease treatment.

cs.CV↗

arXiv2018

Analysis of Cellular Feature Differences of Astrocytomas with Distinct Mutational Profiles Using Digitized Histopathology Images

Cellular phenotypic features derived from histopathology images are the basis of pathologic diagnosis and are thought to be related to underlying molecular profiles. Due to overwhelming cell numbers and population heterogeneity, it remains challenging to quantitatively compute and compare features of cells with distinct molecular signatures. In this study, we propose a self-reliant and efficient analysis framework that supports quantitative analysis of cellular phenotypic difference across distinct molecular groups. To demonstrate efficacy, we quantitatively analyze astrocytomas that are molecularly characterized as either Isocitrate Dehydrogenase (IDH) mutant (MUT) or wildtype (WT) using imaging data from The Cancer Genome Atlas database. Representative cell instances that are phenotypically different between these two groups are retrieved after segmentation, feature computation, data pruning, dimensionality reduction, and unsupervised clustering. Our analysis is generic and can be applied to a wide set of cell-based biomedical research.

cs.CV↗

arXiv2016

Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets

Background: We describe an informatics framework for researchers and clinical investigators to efficiently perform parameter sensitivity analysis and auto-tuning for algorithms that segment and classify image features in a large dataset of high-resolution images. The computational cost of the sensitivity analysis process can be very high, because the process requires processing the input dataset several times to systematically evaluate how output varies when input parameters are varied. Thus, high performance computing techniques are required to quickly execute the sensitivity analysis process. Results: We carried out an empirical evaluation of the proposed method on high performance computing clusters with multi-core CPUs and co-processors (GPUs and Intel Xeon Phis). Our results show that (1) the framework achieves excellent scalability and efficiency on a high performance computing cluster -- execution efficiency remained above 85% in all experiments; (2) the parameter auto-tuning methods are able to converge by visiting only a small fraction (0.0009%) of the search space with limited impact to the algorithm output (0.56% on average). Conclusions: The sensitivity analysis framework provides a range of strategies for the efficient exploration of the parameter space, as well as multiple indexes to evaluate the effect of parameter modification to outputs or even correlation between parameters. Our work demonstrates the feasibility of performing sensitivity analyses, parameter studies, and auto-tuning with large datasets with the use of high-performance systems and techniques. The proposed technologies will enable the quantification of error estimations and output variations in these pipelines, which may be used in application specific ways to assess uncertainty of conclusions extracted from data generated by these image analysis pipelines.

cs.DC↗